Wall clock time and date at job start Tue Mar 31 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.87488 * 2 1 4 4 C 1.54327 * 109.88258 * 238.82548 * 2 1 3 5 5 H 1.09004 * 110.72064 * 336.75342 * 4 2 1 6 6 N 1.46499 * 110.72067 * 99.84663 * 4 2 1 7 7 C 1.34776 * 119.99851 * 205.00569 * 6 4 2 8 8 O 1.21281 * 120.00617 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00125 * 180.02562 * 7 6 4 10 10 H 1.09006 * 109.38563 * 300.00285 * 9 7 6 11 11 C 1.52584 * 109.38956 * 180.20581 * 9 7 6 12 12 C 1.52586 * 110.64229 * 169.85605 * 11 9 7 13 13 C 1.53028 * 109.98775 * 69.99190 * 12 11 9 14 14 S 1.81672 * 108.99679 * 296.34941 * 13 12 11 15 15 O 1.42097 * 108.66387 * 168.62964 * 14 13 12 16 16 O 1.42101 * 108.66185 * 299.96881 * 14 13 12 17 17 C 1.53040 * 109.38477 * 59.78443 * 9 7 6 18 18 C 1.55153 * 102.94778 * 218.38922 * 4 2 1 19 19 C 1.54691 * 101.67338 * 35.33265 * 18 4 2 20 20 N 1.47021 * 109.88649 * 121.01722 * 2 1 3 21 21 C 1.36931 * 125.64976 * 298.32059 * 20 2 1 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 2 23 23 C 1.38812 * 120.00429 * 179.97438 * 21 20 2 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 H 1.09007 * 109.46572 * 300.43598 * 1 2 3 30 30 H 1.08997 * 109.47126 * 60.43460 * 1 2 3 31 31 H 1.08997 * 109.47299 * 180.44327 * 1 2 3 32 32 H 0.97001 * 120.00254 * 24.99990 * 6 4 2 33 33 H 1.09000 * 109.24120 * 290.15888 * 11 9 7 34 34 H 1.09000 * 109.23511 * 49.55904 * 11 9 7 35 35 H 1.09002 * 109.38231 * 190.14795 * 12 11 9 36 36 H 1.09002 * 109.38599 * 309.82460 * 12 11 9 37 37 H 1.08994 * 109.55331 * 56.20307 * 13 12 11 38 38 H 1.09001 * 109.55183 * 176.39909 * 13 12 11 39 39 H 1.09007 * 109.54921 * 303.66759 * 17 9 7 40 40 H 1.09002 * 109.54842 * 63.94999 * 17 9 7 41 41 H 1.08998 * 111.00828 * 153.57278 * 18 4 2 42 42 H 1.08997 * 111.00273 * 277.43187 * 18 4 2 43 43 H 1.09002 * 110.39100 * 204.36370 * 19 18 4 44 44 H 1.09004 * 110.23817 * 82.11472 * 19 18 4 45 45 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4515 0.1928 -2.2894 7 6 2.4530 -0.1948 -3.5802 8 8 2.1266 -1.3251 -3.8745 9 6 2.8616 0.7761 -4.6580 10 1 2.1936 1.6373 -4.6414 11 6 2.7707 0.0907 -6.0182 12 6 2.9333 1.1071 -7.1447 13 6 4.3764 1.6144 -7.1871 14 16 4.7385 2.4975 -5.6413 15 8 6.1379 2.7337 -5.5695 16 8 3.8400 3.5918 -5.5215 17 6 4.2971 1.2420 -4.4044 18 6 3.2876 -1.5152 -0.6905 19 6 2.8191 -1.8753 0.7392 20 7 2.0301 -0.7124 1.1849 21 6 1.8051 -0.3522 2.4867 22 1 1.2144 0.5238 2.7102 23 6 2.3355 -1.1136 3.5191 24 7 3.0542 -2.1821 3.2467 25 14 2.0221 -0.6265 5.2950 26 1 2.6868 -1.5987 6.1996 27 1 2.5701 0.7319 5.5398 28 1 0.5605 -0.6254 5.5575 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 0.5070 -0.8938 31 1 -0.3634 -1.0276 0.0080 32 1 2.7129 1.0968 -2.0541 33 1 3.5571 -0.6601 -6.0954 34 1 1.7998 -0.3960 -6.1109 35 1 2.6877 0.6351 -8.0960 36 1 2.2594 1.9467 -6.9745 37 1 5.0571 0.7697 -7.2926 38 1 4.5006 2.2908 -8.0328 39 1 4.3695 1.6738 -3.4061 40 1 4.9759 0.3931 -4.4861 41 1 3.4851 -2.4128 -1.2764 42 1 4.1653 -0.8698 -0.6593 43 1 3.6777 -2.0245 1.3939 44 1 2.1971 -2.7702 0.7180 45 1 3.4246 -2.7143 3.9682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088894129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:37 Heat of formation + Delta-G solvation = -87.421362 kcal Electronic energy + Delta-G solvation = -27190.903779 eV Core-core repulsion = 23336.151990 eV Total energy + Delta-G solvation = -3854.751789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.24957 -38.05075 -37.41277 -36.53633 -36.36977 -34.19749 -32.70257 -31.76704 -30.43629 -28.65925 -28.11628 -25.54699 -24.16691 -23.99839 -21.90844 -20.45970 -20.24470 -19.57932 -19.24056 -17.68501 -16.92046 -16.86527 -16.49396 -16.11969 -15.77357 -15.61901 -14.90173 -14.55090 -14.40383 -14.13773 -13.97322 -13.66386 -13.44799 -13.35880 -12.84178 -12.51831 -12.37398 -12.32940 -12.18982 -12.05745 -11.83827 -11.79579 -11.60956 -11.43579 -11.26607 -11.19782 -10.88563 -10.86195 -10.75653 -10.61954 -10.45508 -10.15968 -9.81959 -9.68918 -9.57571 -8.75905 -8.67214 -6.92239 -5.69640 -3.12500 -0.39191 2.20322 2.58321 3.15014 3.26276 3.37796 3.42446 3.43544 3.52645 4.04118 4.06351 4.19614 4.30589 4.40844 4.45666 4.69260 4.80338 4.91231 5.09562 5.14152 5.23455 5.28610 5.37620 5.45459 5.48903 5.56628 5.64845 5.75646 5.81538 6.06702 6.17683 6.25225 6.28506 6.46367 6.53802 6.63874 6.81620 7.03706 7.45725 7.57798 7.59182 7.80261 8.23405 8.30761 9.16398 9.77293 10.40705 11.33912 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.002759 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.209810 B =10145.505100 C =10572.219420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.036 0.964 4 C 0.133 3.867 5 H 0.095 0.905 6 N -0.713 5.713 7 C 0.524 3.476 8 O -0.536 6.536 9 C -0.097 4.097 10 H 0.117 0.883 11 C -0.124 4.124 12 C -0.109 4.109 13 C -0.605 4.605 14 S 2.422 3.578 15 O -0.940 6.940 16 O -0.933 6.933 17 C -0.603 4.603 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.595 5.595 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.915 3.085 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.398 0.602 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.014 0.986 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 6.816 -21.758 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.053 0.947 4 C 0.029 3.971 5 H 0.113 0.887 6 N -0.362 5.362 7 C 0.308 3.692 8 O -0.413 6.413 9 C -0.119 4.119 10 H 0.135 0.865 11 C -0.162 4.162 12 C -0.147 4.147 13 C -0.734 4.734 14 S 2.604 3.396 15 O -0.937 6.937 16 O -0.930 6.930 17 C -0.731 4.731 18 C -0.193 4.193 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.212 1.212 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.233 0.767 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.032 0.968 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.641 6.776 -21.587 22.685 hybrid contribution -0.254 -0.167 1.017 1.062 sum 1.386 6.609 -20.570 21.650 Atomic orbital electron populations 1.22238 0.97824 1.01404 0.99999 1.21007 0.92698 0.94794 0.86920 0.94657 1.22203 0.97773 0.90838 0.86308 0.88691 1.46080 1.67817 1.16205 1.06142 1.20077 0.77632 0.88217 0.83305 1.90711 1.48098 1.20225 1.82294 1.21076 0.94264 1.00434 0.96127 0.86484 1.21565 1.06165 0.98129 0.90295 1.21303 0.92164 1.00143 1.01135 1.30262 1.06703 1.14763 1.21705 1.07985 0.75276 0.77302 0.79068 1.93614 1.30219 1.84160 1.85676 1.93604 1.66443 1.47670 1.85286 1.30372 1.04816 1.18977 1.18978 1.23366 0.96734 0.99304 0.99881 1.21894 0.97366 0.88475 0.89426 1.44471 1.59061 1.28425 1.00059 1.18976 1.27357 1.08234 0.80502 0.90484 1.24790 1.00286 0.97330 0.98088 1.69789 1.39081 1.17740 1.30336 0.86152 0.77680 0.77439 0.84203 1.21575 1.21148 1.21203 0.92651 0.94325 0.92946 0.76745 0.89911 0.88389 0.89037 0.89552 0.84705 0.84710 0.84137 0.83959 0.91999 0.92015 0.87367 0.96760 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.15 2.98 3.48 -66.95 -0.23 2.75 16 3 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 4 C 0.13 2.29 2.84 -66.10 -0.19 2.10 16 5 H 0.10 1.76 7.26 -51.93 -0.38 1.39 16 6 N -0.71 -9.42 5.05 -52.03 -0.26 -9.68 16 7 C 0.52 6.57 7.14 -10.98 -0.08 6.49 16 8 O -0.54 -8.67 15.43 5.56 0.09 -8.59 16 9 C -0.10 -0.78 2.35 -91.96 -0.22 -1.00 16 10 H 0.12 0.76 8.01 -51.93 -0.42 0.34 16 11 C -0.12 -0.83 4.37 -27.16 -0.12 -0.95 16 12 C -0.11 -0.51 5.73 -26.93 -0.15 -0.66 16 13 C -0.60 -2.59 6.35 37.17 0.24 -2.36 16 14 S 2.42 17.37 5.31 -107.50 -0.57 16.80 16 15 O -0.94 -10.36 18.10 -57.81 -1.05 -11.40 16 16 O -0.93 -9.58 17.94 -57.81 -1.04 -10.61 16 17 C -0.60 -4.08 5.55 37.18 0.21 -3.87 16 18 C -0.15 -2.90 6.76 -24.70 -0.17 -3.07 16 19 C 0.15 3.64 5.87 -2.64 -0.02 3.63 16 20 N -0.59 -14.48 3.13 -162.71 -0.51 -14.99 16 21 C -0.22 -5.95 9.87 -15.06 -0.15 -6.10 16 22 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 25 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.05 1.04 8.03 -51.93 -0.42 0.62 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.40 4.33 7.73 -40.82 -0.32 4.01 16 33 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.10 0.76 7.73 -51.93 -0.40 0.35 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.38 8.01 -51.93 -0.42 -0.04 16 37 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.14 0.87 7.45 -51.92 -0.39 0.48 16 40 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.11 2.89 5.89 -51.93 -0.31 2.59 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -36.14 366.20 -10.13 -46.27 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.21 Total: 1.64 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.63 Total: -5.85 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.21 Total: -50.40 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -2.00 Total: -30.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 17.37 SS G_CDS: -0.57 Total: 16.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.14 -10.13 -46.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088894129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.155 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds