Wall clock time and date at job start Tue Mar 31 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.99832 * 2 1 4 4 C 1.54327 * 109.88522 * 238.90004 * 2 1 3 5 5 H 1.09002 * 110.87128 * 336.82815 * 4 2 1 6 6 N 1.46512 * 110.71634 * 100.02638 * 4 2 1 7 7 C 1.34781 * 119.99609 * 199.97771 * 6 4 2 8 8 O 1.21276 * 120.00189 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99480 * 180.02562 * 7 6 4 10 10 H 1.09003 * 109.38485 * 60.21001 * 9 7 6 11 11 C 1.52587 * 109.38152 * 179.97438 * 9 7 6 12 12 C 1.52593 * 110.64027 * 190.03788 * 11 9 7 13 13 C 1.53035 * 109.98565 * 290.01413 * 12 11 9 14 14 S 1.81664 * 109.00001 * 63.64966 * 13 12 11 15 15 O 1.42105 * 108.66421 * 60.03017 * 14 13 12 16 16 O 1.42099 * 108.66351 * 191.27606 * 14 13 12 17 17 C 1.53330 * 109.25749 * 300.54009 * 9 7 6 18 18 C 1.55151 * 102.94696 * 218.38770 * 4 2 1 19 19 C 1.54917 * 101.57926 * 35.50200 * 18 4 2 20 20 N 1.47027 * 109.88144 * 121.09675 * 2 1 3 21 21 C 1.36934 * 125.64746 * 298.31840 * 20 2 1 22 22 H 1.08007 * 119.99975 * 0.02562 * 21 20 2 23 23 C 1.38809 * 120.00329 * 180.02562 * 21 20 2 24 24 N 1.31621 * 119.99831 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00319 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46759 * 89.99852 * 25 23 21 27 27 H 1.48499 * 109.47379 * 209.99852 * 25 23 21 28 28 H 1.48501 * 109.47054 * 330.00346 * 25 23 21 29 29 H 1.09003 * 109.47203 * 181.09517 * 1 2 3 30 30 H 1.08999 * 109.47338 * 301.09715 * 1 2 3 31 31 H 1.09001 * 109.46985 * 61.09723 * 1 2 3 32 32 H 0.96995 * 119.99674 * 19.97694 * 6 4 2 33 33 H 1.08995 * 109.24409 * 69.74161 * 11 9 7 34 34 H 1.09002 * 109.21375 * 310.31636 * 11 9 7 35 35 H 1.09002 * 109.37950 * 169.85479 * 12 11 9 36 36 H 1.09003 * 109.29845 * 50.12318 * 12 11 9 37 37 H 1.09004 * 109.54987 * 303.79318 * 13 12 11 38 38 H 1.09005 * 109.62786 * 183.55393 * 13 12 11 39 39 H 1.09003 * 109.72595 * 56.43216 * 17 9 7 40 40 H 1.08997 * 109.51459 * 296.05921 * 17 9 7 41 41 H 1.09000 * 111.00646 * 153.57209 * 18 4 2 42 42 H 1.09004 * 111.00801 * 277.39516 * 18 4 2 43 43 H 1.09005 * 110.36221 * 81.82882 * 19 18 4 44 44 H 1.08993 * 110.36834 * 204.03636 * 19 18 4 45 45 H 0.97001 * 120.00329 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3064 -1.4459 -1.6211 6 7 2.4555 0.1961 -2.2875 7 6 2.5559 -0.2161 -3.5668 8 8 2.3151 -1.3697 -3.8530 9 6 2.9686 0.7565 -4.6415 10 1 3.9603 1.1476 -4.4140 11 6 3.0042 0.0388 -5.9875 12 6 3.6521 0.9211 -7.0506 13 6 2.7308 2.0955 -7.3881 14 16 2.5303 3.1334 -5.9107 15 8 3.8080 3.6136 -5.5154 16 8 1.4808 4.0620 -6.1463 17 6 1.9644 1.9142 -4.6885 18 6 3.2876 -1.5142 -0.6924 19 6 2.8145 -1.8794 0.7369 20 7 2.0299 -0.7141 1.1839 21 6 1.8049 -0.3556 2.4862 22 1 1.2142 0.5202 2.7109 23 6 2.3360 -1.1178 3.5177 24 7 3.0564 -2.1848 3.2439 25 14 2.0285 -0.6292 5.2942 26 1 0.7885 -1.2858 5.7805 27 1 3.1772 -1.0586 6.1317 28 1 1.8752 0.8453 5.3826 29 1 -0.3634 -1.0275 0.0196 30 1 -0.3634 0.5308 0.8800 31 1 -0.3633 0.4967 -0.8997 32 1 2.6484 1.1186 -2.0585 33 1 1.9862 -0.2028 -6.2929 34 1 3.5775 -0.8829 -5.8875 35 1 3.8312 0.3316 -7.9498 36 1 4.6009 1.3023 -6.6730 37 1 1.7582 1.7174 -7.7030 38 1 3.1702 2.6863 -8.1920 39 1 1.8987 2.3844 -3.7073 40 1 0.9847 1.5349 -4.9789 41 1 3.4852 -2.4111 -1.2795 42 1 4.1656 -0.8690 -0.6609 43 1 2.1886 -2.7715 0.7129 44 1 3.6716 -2.0357 1.3918 45 1 3.4273 -2.7177 3.9646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088894130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:45 Heat of formation + Delta-G solvation = -87.106864 kcal Electronic energy + Delta-G solvation = -27177.949914 eV Core-core repulsion = 23323.211762 eV Total energy + Delta-G solvation = -3854.738152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.24298 -38.04599 -37.41670 -36.52892 -36.38195 -34.19629 -32.70451 -31.76765 -30.42014 -28.65950 -28.12661 -25.55179 -24.18189 -24.00019 -21.91485 -20.45907 -20.21422 -19.60301 -19.24370 -17.68140 -16.91319 -16.87935 -16.51624 -16.05217 -15.76563 -15.68678 -14.90391 -14.62570 -14.29978 -14.19181 -13.95872 -13.72897 -13.41903 -13.31250 -12.87516 -12.53065 -12.39958 -12.37487 -12.19150 -11.97523 -11.89716 -11.79215 -11.63029 -11.43696 -11.27922 -11.18225 -10.90185 -10.86986 -10.75839 -10.59033 -10.45059 -10.12501 -9.83843 -9.69698 -9.56219 -8.76103 -8.67579 -6.92396 -5.69530 -3.12760 -0.40880 2.19761 2.58366 3.15030 3.25175 3.37239 3.42473 3.44251 3.51259 4.02768 4.05208 4.18905 4.29572 4.39938 4.45434 4.68996 4.79519 4.90711 5.07977 5.13642 5.23364 5.26194 5.37433 5.46086 5.48083 5.57666 5.65090 5.75107 5.81437 6.05624 6.18459 6.23758 6.27731 6.46935 6.53487 6.65495 6.80213 7.03089 7.46282 7.58133 7.59434 7.80890 8.23950 8.31147 9.16338 9.77175 10.40492 11.33780 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.002736 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.044997 B =10231.981232 C =10809.201900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.092 0.908 6 N -0.713 5.713 7 C 0.524 3.476 8 O -0.536 6.536 9 C -0.097 4.097 10 H 0.118 0.882 11 C -0.124 4.124 12 C -0.110 4.110 13 C -0.604 4.604 14 S 2.421 3.579 15 O -0.932 6.932 16 O -0.941 6.941 17 C -0.603 4.603 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.595 5.595 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.398 0.602 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.014 0.986 44 H 0.109 0.891 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 7.200 -21.902 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.110 0.890 6 N -0.363 5.363 7 C 0.308 3.692 8 O -0.413 6.413 9 C -0.120 4.120 10 H 0.136 0.864 11 C -0.161 4.161 12 C -0.148 4.148 13 C -0.734 4.734 14 S 2.603 3.397 15 O -0.929 6.929 16 O -0.938 6.938 17 C -0.731 4.731 18 C -0.193 4.193 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.032 0.968 44 H 0.127 0.873 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.271 7.213 -21.753 22.919 hybrid contribution -0.461 -0.125 0.990 1.099 sum -0.189 7.089 -20.763 21.940 Atomic orbital electron populations 1.22247 0.97860 1.01472 0.99932 1.20994 0.92614 0.94803 0.86940 0.94640 1.22197 0.97728 0.90758 0.86340 0.88974 1.46102 1.68906 1.14149 1.07156 1.20063 0.77534 0.88479 0.83164 1.90711 1.49593 1.18883 1.82074 1.21141 0.99831 0.94258 0.96740 0.86416 1.21564 1.03763 0.99818 0.90992 1.21312 0.97979 0.94684 1.00806 1.30257 1.09789 1.12962 1.20371 1.08015 0.75651 0.77185 0.78866 1.93608 1.40464 1.77579 1.81289 1.93611 1.57702 1.57906 1.84541 1.30411 1.09985 1.13566 1.19171 1.23402 0.96697 0.99362 0.99794 1.21950 0.97392 0.88361 0.89520 1.44483 1.59243 1.28231 1.00048 1.19019 1.27270 1.08247 0.80479 0.90447 1.24790 1.00262 0.97365 0.98094 1.69791 1.38995 1.17866 1.30230 0.86076 0.77259 0.77754 0.84406 1.21632 1.21645 1.20686 0.92895 0.92643 0.94384 0.76771 0.89960 0.88308 0.88997 0.89509 0.84730 0.84687 0.84124 0.84055 0.91934 0.91932 0.96785 0.87290 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.14 37.15 0.34 -2.44 16 2 C 0.15 2.98 3.48 -66.95 -0.23 2.75 16 3 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 4 C 0.13 2.31 2.76 -66.09 -0.18 2.13 16 5 H 0.09 1.70 7.41 -51.93 -0.38 1.32 16 6 N -0.71 -9.44 5.07 -52.02 -0.26 -9.70 16 7 C 0.52 6.59 7.14 -10.98 -0.08 6.51 16 8 O -0.54 -8.68 15.51 5.56 0.09 -8.59 16 9 C -0.10 -0.79 2.36 -91.81 -0.22 -1.00 16 10 H 0.12 0.80 8.01 -51.93 -0.42 0.39 16 11 C -0.12 -0.84 4.38 -27.15 -0.12 -0.95 16 12 C -0.11 -0.51 5.73 -26.92 -0.15 -0.67 16 13 C -0.60 -2.53 6.35 37.18 0.24 -2.29 16 14 S 2.42 16.94 5.30 -107.50 -0.57 16.37 16 15 O -0.93 -9.58 17.94 -57.82 -1.04 -10.62 16 16 O -0.94 -10.07 18.10 -57.82 -1.05 -11.11 16 17 C -0.60 -3.87 5.57 37.33 0.21 -3.67 16 18 C -0.15 -2.93 6.77 -24.58 -0.17 -3.09 16 19 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 20 N -0.59 -14.48 3.13 -162.57 -0.51 -14.99 16 21 C -0.22 -5.94 9.89 -15.06 -0.15 -6.09 16 22 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 25 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.40 4.32 7.65 -40.82 -0.31 4.01 16 33 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.10 0.78 7.73 -51.93 -0.40 0.38 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.39 8.01 -51.93 -0.42 -0.02 16 37 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.14 0.80 7.44 -51.93 -0.39 0.41 16 40 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -36.18 366.29 -10.12 -46.30 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.21 Total: 1.47 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.63 Total: -5.55 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.21 Total: -50.42 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -2.00 Total: -30.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 16.94 SS G_CDS: -0.57 Total: 16.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.18 -10.12 -46.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088894130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.806 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds