Wall clock time and date at job start Tue Mar 31 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.99697 * 2 1 4 4 C 1.54327 * 109.88021 * 238.90594 * 2 1 3 5 5 H 1.09001 * 110.72260 * 336.92945 * 4 2 1 6 6 N 1.46499 * 110.72386 * 100.02876 * 4 2 1 7 7 C 1.34777 * 120.00199 * 205.00147 * 6 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 4 10 10 C 1.52589 * 109.24151 * 300.28068 * 9 7 6 11 11 C 1.53054 * 109.97834 * 169.67814 * 10 9 7 12 12 S 1.81665 * 108.96689 * 63.70197 * 11 10 9 13 13 O 1.42101 * 108.66209 * 191.35366 * 12 11 10 14 14 O 1.42103 * 108.74841 * 60.04569 * 12 11 10 15 15 C 1.81673 * 101.30972 * 305.68440 * 12 11 10 16 16 C 1.52590 * 109.24019 * 179.16449 * 9 7 6 17 17 C 1.55163 * 102.94171 * 218.39285 * 4 2 1 18 18 C 1.54912 * 101.58024 * 35.50132 * 17 4 2 19 19 N 1.47020 * 109.88209 * 121.10090 * 2 1 3 20 20 C 1.36941 * 125.64450 * 298.31967 * 19 2 1 21 21 H 1.08007 * 120.00182 * 359.97438 * 20 19 2 22 22 C 1.38810 * 120.00241 * 180.02562 * 20 19 2 23 23 N 1.31625 * 119.99524 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00349 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47195 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47330 * 119.99986 * 24 22 20 27 27 H 1.48506 * 109.47114 * 239.99808 * 24 22 20 28 28 H 1.09002 * 109.47285 * 181.09066 * 1 2 3 29 29 H 1.08999 * 109.47211 * 301.09831 * 1 2 3 30 30 H 1.09002 * 109.47206 * 61.09557 * 1 2 3 31 31 H 0.97000 * 119.99484 * 24.99244 * 6 4 2 32 32 H 1.08994 * 109.23687 * 59.72100 * 9 7 6 33 33 H 1.09009 * 109.38269 * 289.87420 * 10 9 7 34 34 H 1.09001 * 109.38533 * 49.55007 * 10 9 7 35 35 H 1.08995 * 109.57521 * 303.84923 * 11 10 9 36 36 H 1.08997 * 109.54635 * 183.54066 * 11 10 9 37 37 H 1.08995 * 109.54752 * 294.44226 * 15 12 11 38 38 H 1.09002 * 109.54665 * 174.15547 * 15 12 11 39 39 H 1.08998 * 109.38392 * 310.44395 * 16 9 7 40 40 H 1.08998 * 109.38540 * 70.12900 * 16 9 7 41 41 H 1.08992 * 111.00346 * 153.57642 * 17 4 2 42 42 H 1.09004 * 111.00106 * 277.43022 * 17 4 2 43 43 H 1.09003 * 110.36105 * 204.15613 * 18 17 4 44 44 H 1.08998 * 110.46135 * 81.87902 * 18 17 4 45 45 H 0.96998 * 119.99983 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3039 -1.4437 -1.6202 6 7 2.4555 0.1960 -2.2876 7 6 2.4581 -0.1884 -3.5794 8 8 2.1292 -1.3172 -3.8768 9 6 2.8762 0.7825 -4.6535 10 6 1.9515 1.9958 -4.6224 11 6 2.5081 3.1008 -5.5234 12 16 2.5230 2.5103 -7.2413 13 8 3.2756 3.4226 -8.0291 14 8 1.1927 2.1919 -7.6264 15 6 3.4666 0.9664 -7.0792 16 6 2.8082 0.0898 -6.0115 17 6 3.2875 -1.5144 -0.6925 18 6 2.8144 -1.8795 0.7367 19 7 2.0300 -0.7142 1.1838 20 6 1.8049 -0.3557 2.4862 21 1 1.2148 0.5206 2.7109 22 6 2.3360 -1.1179 3.5176 23 7 3.0556 -2.1855 3.2437 24 14 2.0285 -0.6294 5.2941 25 1 1.1958 0.5995 5.3325 26 1 1.3195 -1.7303 5.9946 27 1 3.3261 -0.3688 5.9676 28 1 -0.3634 -1.0275 0.0196 29 1 -0.3633 0.5308 0.8800 30 1 -0.3634 0.4967 -0.8997 31 1 2.7187 1.0988 -2.0496 32 1 3.9000 1.1062 -4.4663 33 1 0.9615 1.7053 -4.9745 34 1 1.8756 2.3668 -3.6003 35 1 3.5235 3.3476 -5.2137 36 1 1.8766 3.9859 -5.4473 37 1 4.4907 1.1942 -6.7835 38 1 3.4697 0.4389 -8.0331 39 1 3.3289 -0.8661 -5.9565 40 1 1.7654 -0.0828 -6.2777 41 1 3.4850 -2.4111 -1.2797 42 1 4.1654 -0.8689 -0.6604 43 1 3.6716 -2.0339 1.3921 44 1 2.1890 -2.7720 0.7146 45 1 3.4270 -2.7180 3.9644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088895420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:48 Heat of formation + Delta-G solvation = -87.315372 kcal Electronic energy + Delta-G solvation = -27041.692120 eV Core-core repulsion = 23186.944927 eV Total energy + Delta-G solvation = -3854.747193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.31975 -38.06237 -37.39709 -36.48868 -36.36772 -34.20851 -32.40777 -31.96419 -30.46105 -29.26088 -28.16379 -24.87014 -24.06544 -24.01188 -22.31100 -20.44295 -20.26605 -19.62821 -19.23638 -17.55369 -17.10517 -16.81383 -16.74936 -16.08585 -16.06241 -15.16745 -14.85823 -14.58397 -14.43982 -14.04253 -13.98893 -13.57839 -13.49287 -13.28929 -12.86219 -12.59363 -12.50171 -12.36566 -12.27432 -12.20342 -12.08601 -11.82484 -11.63580 -11.49329 -11.21052 -11.11463 -10.91853 -10.90189 -10.65513 -10.50588 -10.43867 -10.12431 -9.84370 -9.75367 -9.61321 -8.77602 -8.69632 -6.94306 -5.71914 -3.15007 -0.38599 2.25239 2.55790 3.05590 3.25981 3.34831 3.40477 3.42942 3.58053 3.96841 4.07192 4.16663 4.31632 4.42987 4.44627 4.64076 4.76827 4.86983 5.02864 5.13140 5.22967 5.32691 5.35545 5.40602 5.47542 5.54743 5.60111 5.74187 5.77380 6.04280 6.16354 6.23161 6.26660 6.44409 6.52068 6.62581 6.79555 7.02157 7.44428 7.56282 7.57894 7.78517 8.22823 8.29048 9.14148 9.75077 10.38314 11.31484 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.002466 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.189310 B =11351.951081 C =11693.117887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.133 3.867 5 H 0.095 0.905 6 N -0.713 5.713 7 C 0.520 3.480 8 O -0.536 6.536 9 C -0.130 4.130 10 C -0.106 4.106 11 C -0.602 4.602 12 S 2.413 3.587 13 O -0.945 6.945 14 O -0.934 6.934 15 C -0.601 4.601 16 C -0.094 4.094 17 C -0.153 4.153 18 C 0.152 3.848 19 N -0.595 5.595 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.398 0.602 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.015 0.985 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 9.180 -18.592 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.028 3.972 5 H 0.113 0.887 6 N -0.363 5.363 7 C 0.305 3.695 8 O -0.412 6.412 9 C -0.151 4.151 10 C -0.145 4.145 11 C -0.731 4.731 12 S 2.595 3.405 13 O -0.942 6.942 14 O -0.931 6.931 15 C -0.730 4.730 16 C -0.132 4.132 17 C -0.192 4.192 18 C 0.027 3.973 19 N -0.321 5.321 20 C -0.349 4.349 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.233 0.767 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.033 0.967 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.356 8.677 -19.324 21.226 hybrid contribution 0.405 0.374 1.789 1.872 sum 1.761 9.050 -17.536 19.812 Atomic orbital electron populations 1.22244 0.97839 1.01502 0.99921 1.20995 0.92634 0.94730 0.86943 0.94731 1.22213 0.97752 0.90832 0.86359 0.88675 1.46086 1.67826 1.16303 1.06098 1.20105 0.77893 0.88234 0.83286 1.90724 1.47717 1.20558 1.82215 1.21544 1.02298 0.95708 0.95563 1.21316 0.99637 0.91406 1.02103 1.30228 1.11170 1.09149 1.22545 1.08196 0.76414 0.77881 0.77991 1.93599 1.73121 1.61507 1.66019 1.93606 1.34857 1.84157 1.80514 1.30237 1.14144 1.19962 1.08692 1.21101 1.03157 0.99499 0.89467 1.23395 0.96695 0.99303 0.99848 1.21952 0.97418 0.88421 0.89489 1.44498 1.59249 1.28225 1.00081 1.19063 1.27193 1.08165 0.80474 0.90403 1.24794 1.00325 0.97356 0.98100 1.69802 1.39107 1.17858 1.30113 0.86008 0.77362 0.77563 0.84593 1.20542 1.21731 1.21753 0.92890 0.92706 0.94330 0.76742 0.87242 0.88758 0.88589 0.84509 0.84259 0.84746 0.84360 0.88110 0.88915 0.92012 0.92000 0.87324 0.96719 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.13 37.16 0.34 -2.40 16 2 C 0.16 2.91 3.48 -66.95 -0.23 2.68 16 3 H 0.04 0.62 7.72 -51.93 -0.40 0.22 16 4 C 0.13 2.22 2.85 -66.09 -0.19 2.03 16 5 H 0.10 1.74 7.25 -51.93 -0.38 1.36 16 6 N -0.71 -8.84 4.98 -52.03 -0.26 -9.10 16 7 C 0.52 6.30 7.13 -10.98 -0.08 6.22 16 8 O -0.54 -8.67 15.42 5.55 0.09 -8.58 16 9 C -0.13 -0.96 2.27 -92.19 -0.21 -1.17 16 10 C -0.11 -0.64 5.00 -26.91 -0.13 -0.78 16 11 C -0.60 -2.64 6.35 37.19 0.24 -2.41 16 12 S 2.41 16.54 5.30 -107.50 -0.57 15.97 16 13 O -0.95 -9.70 18.10 -57.82 -1.05 -10.75 16 14 O -0.93 -10.01 17.95 -57.82 -1.04 -11.05 16 15 C -0.60 -3.04 6.35 37.18 0.24 -2.80 16 16 C -0.09 -0.70 4.46 -26.92 -0.12 -0.82 16 17 C -0.15 -2.83 6.77 -24.58 -0.17 -3.00 16 18 C 0.15 3.56 5.89 -2.53 -0.01 3.54 16 19 N -0.60 -14.20 3.13 -162.57 -0.51 -14.71 16 20 C -0.22 -5.81 9.89 -15.06 -0.15 -5.96 16 21 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -25.99 10.09 55.49 0.56 -25.43 16 24 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.40 3.86 7.65 -40.82 -0.31 3.55 16 32 H 0.11 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.09 0.63 8.02 -51.92 -0.42 0.22 16 34 H 0.10 0.50 7.23 -51.93 -0.38 0.12 16 35 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.14 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.84 7.73 -51.93 -0.40 0.44 16 40 H 0.09 0.77 8.02 -51.93 -0.42 0.35 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -36.14 365.95 -10.06 -46.20 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.19 Total: 0.82 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.58 Total: -5.23 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.21 Total: -49.24 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -2.00 Total: -30.38 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 16.54 SS G_CDS: -0.57 Total: 15.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.14 -10.06 -46.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088895420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.116 kcal (2) G-P(sol) polarization free energy of solvation -36.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds