Wall clock time and date at job start Tue Mar 31 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46790 * 2 1 4 4 H 1.08998 * 109.47359 * 305.00100 * 3 2 1 5 5 C 1.52997 * 109.47220 * 65.00342 * 3 2 1 6 6 C 1.50704 * 109.46789 * 185.00372 * 3 2 1 7 7 O 1.21282 * 120.00086 * 350.97541 * 6 3 2 8 8 N 1.34776 * 120.00027 * 170.97547 * 6 3 2 9 9 C 1.46930 * 120.45644 * 5.52888 * 8 6 3 10 10 C 1.53402 * 108.52853 * 235.33696 * 9 8 6 11 11 N 1.46933 * 108.52877 * 309.85687 * 10 9 8 12 12 C 1.36932 * 120.46271 * 235.35055 * 11 10 9 13 13 H 1.07997 * 120.00292 * 155.65058 * 12 11 10 14 14 C 1.38814 * 119.99577 * 335.64606 * 12 11 10 15 15 N 1.31619 * 120.00298 * 337.19630 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 157.18819 * 14 12 11 17 17 H 1.48497 * 109.46897 * 90.00421 * 16 14 12 18 18 H 1.48496 * 109.47099 * 210.00326 * 16 14 12 19 19 H 1.48501 * 109.47337 * 330.00415 * 16 14 12 20 20 C 1.46771 * 119.08114 * 55.32716 * 11 10 9 21 21 H 1.09006 * 110.43581 * 68.54845 * 20 11 10 22 22 C 1.54865 * 108.62451 * 189.82100 * 20 11 10 23 23 S 1.83947 * 102.46100 * 77.53494 * 22 20 11 24 24 O 1.42107 * 108.66846 * 268.55502 * 23 22 20 25 25 O 1.42097 * 109.90208 * 135.60381 * 23 22 20 26 26 C 1.82877 * 97.35282 * 21.89697 * 23 22 20 27 27 C 1.45255 * 120.10763 * 186.12909 * 8 6 3 28 28 H 1.09004 * 109.61504 * 5.83336 * 27 8 6 29 29 H 1.08998 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47143 * 299.99718 * 1 2 3 31 31 H 1.08996 * 109.47336 * 59.99525 * 1 2 3 32 32 H 1.09004 * 109.46573 * 240.00745 * 2 1 3 33 33 H 1.08996 * 109.47336 * 120.00475 * 2 1 3 34 34 H 1.08997 * 109.46978 * 306.82930 * 5 3 2 35 35 H 1.09001 * 109.46809 * 66.82561 * 5 3 2 36 36 H 1.08992 * 109.47311 * 186.82605 * 5 3 2 37 37 H 1.08999 * 109.62981 * 115.62394 * 9 8 6 38 38 H 1.09007 * 109.78573 * 355.13769 * 9 8 6 39 39 H 1.09002 * 109.62469 * 190.14389 * 10 9 8 40 40 H 1.08998 * 109.78660 * 69.66556 * 10 9 8 41 41 H 0.97001 * 119.99921 * 180.02562 * 15 14 12 42 42 H 1.08992 * 110.74749 * 195.29952 * 22 20 11 43 43 H 1.08995 * 110.74621 * 318.65318 * 22 20 11 44 44 H 1.08999 * 110.29068 * 243.31411 * 26 23 22 45 45 H 1.08995 * 110.29043 * 121.20026 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 8 4.1586 0.4035 -0.0398 8 7 4.1998 2.6028 -0.3282 9 6 3.4779 3.8824 -0.3111 10 6 3.7488 4.6126 -1.6327 11 7 5.1992 4.6324 -1.8664 12 6 5.8531 5.8178 -2.0721 13 1 6.9083 5.8971 -1.8557 14 6 5.1598 6.9176 -2.5587 15 7 4.0429 6.7456 -3.2333 16 14 5.8119 8.6417 -2.2557 17 1 6.7154 9.0316 -3.3678 18 1 4.6757 9.5950 -2.1835 19 1 6.5631 8.6689 -0.9750 20 6 5.9377 3.3640 -1.8760 21 1 5.6620 2.7697 -2.7473 22 6 7.4547 3.6750 -1.8909 23 16 7.7835 4.1317 -0.1396 24 8 7.6307 5.5376 0.0002 25 8 8.9753 3.5013 0.3091 26 6 6.3376 3.2888 0.5975 27 6 5.6303 2.5936 -0.5806 28 1 5.9794 1.5649 -0.6705 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5609 2.0188 1.4563 35 1 2.1657 1.6631 2.1392 36 1 1.8909 3.1850 1.2580 37 1 3.8302 4.4905 0.5221 38 1 2.4082 3.7011 -0.2056 39 1 3.3740 5.6343 -1.5699 40 1 3.2531 4.0905 -2.4511 41 1 3.5586 7.5141 -3.5737 42 1 8.0276 2.7899 -2.1671 43 1 7.6724 4.5032 -2.5652 44 1 5.6720 4.0164 1.0618 45 1 6.6633 2.5514 1.3311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094608845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:08 Heat of formation + Delta-G solvation = -59.507757 kcal Electronic energy + Delta-G solvation = -28979.437290 eV Core-core repulsion = 25125.895925 eV Total energy + Delta-G solvation = -3853.541365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.43630 -38.01556 -36.35608 -35.51655 -35.33758 -34.44515 -33.39491 -31.09000 -29.99542 -28.80582 -27.52496 -25.64122 -25.34550 -23.20990 -22.37332 -21.52037 -19.68490 -18.61248 -18.16478 -17.41369 -16.52474 -16.41588 -16.01963 -15.56220 -15.38884 -15.13923 -14.59373 -14.39077 -14.09894 -13.94119 -13.70767 -13.57215 -13.43796 -12.92427 -12.77261 -12.37643 -12.21653 -12.11400 -11.78685 -11.63274 -11.54312 -11.41339 -11.37215 -11.30306 -11.27814 -11.01841 -10.85055 -10.75157 -10.72993 -10.48591 -10.29340 -10.00873 -9.88939 -9.56362 -9.35194 -8.74346 -8.42804 -7.05587 -6.07854 -3.40188 0.61562 2.78431 3.03390 3.31900 3.32625 3.40625 3.56411 4.15326 4.32387 4.53656 4.61458 4.72465 4.82309 4.89110 4.96414 5.05022 5.16247 5.19901 5.24581 5.29763 5.32488 5.41300 5.50455 5.51973 5.73029 5.77104 5.80427 5.81480 5.87423 5.92238 5.97970 6.06232 6.13150 6.24346 6.28361 6.32474 6.34278 6.59975 6.96475 7.21805 7.63527 7.68669 8.05809 8.37411 8.87155 9.49340 9.97979 10.98495 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.005436 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.152440 B = 5149.549970 C = 6625.157654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.110 4.110 4 H 0.097 0.903 5 C -0.153 4.153 6 C 0.517 3.483 7 O -0.552 6.552 8 N -0.586 5.586 9 C 0.067 3.933 10 C 0.151 3.849 11 N -0.580 5.580 12 C -0.258 4.258 13 H 0.095 0.905 14 C 0.013 3.987 15 N -0.888 5.888 16 Si 0.896 3.104 17 H -0.285 1.285 18 H -0.289 1.289 19 H -0.264 1.264 20 C 0.161 3.839 21 H 0.073 0.927 22 C -0.573 4.573 23 S 2.359 3.641 24 O -0.913 6.913 25 O -0.968 6.968 26 C -0.597 4.597 27 C 0.143 3.857 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.122 0.878 43 H 0.156 0.844 44 H 0.137 0.863 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 -8.391 5.487 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.132 4.132 4 H 0.115 0.885 5 C -0.210 4.210 6 C 0.305 3.695 7 O -0.431 6.431 8 N -0.317 5.317 9 C -0.056 4.056 10 C 0.025 3.975 11 N -0.304 5.304 12 C -0.389 4.389 13 H 0.113 0.887 14 C -0.188 4.188 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.188 1.188 20 C 0.051 3.949 21 H 0.091 0.909 22 C -0.703 4.703 23 S 2.542 3.458 24 O -0.910 6.910 25 O -0.964 6.964 26 C -0.726 4.726 27 C 0.035 3.965 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.140 0.860 43 H 0.173 0.827 44 H 0.155 0.845 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.662 -8.290 5.927 11.207 hybrid contribution -0.456 0.541 -0.323 0.778 sum -5.118 -7.749 5.604 10.847 Atomic orbital electron populations 1.21853 0.95626 1.01655 1.01939 1.21314 0.95170 0.94378 1.03243 1.21323 0.92070 0.99091 1.00674 0.88451 1.22028 1.02160 1.01095 0.95763 1.20723 0.90069 0.83027 0.75652 1.90640 1.69494 1.31719 1.51238 1.47584 1.07639 1.07021 1.69474 1.22921 0.96195 0.84135 1.02368 1.21374 0.84050 1.01480 0.90595 1.44372 1.04081 1.00413 1.81504 1.19722 0.96374 0.85985 1.36834 0.88741 1.24961 0.97708 0.99313 0.96782 1.70081 1.18304 1.30171 1.34563 0.86355 0.78263 0.83447 0.79495 1.21192 1.21496 1.18800 1.21243 0.88343 0.90375 0.94896 0.90912 1.30885 1.03303 1.12098 1.23979 1.10998 0.77043 0.77059 0.80670 1.93627 1.85979 1.27027 1.84323 1.93515 1.44043 1.78446 1.80433 1.30657 1.20480 1.13185 1.08268 1.21609 0.81687 1.01066 0.92142 0.87274 0.92665 0.92443 0.92619 0.91443 0.91375 0.91225 0.92289 0.91112 0.91235 0.89362 0.87280 0.95053 0.93159 0.85974 0.82665 0.84513 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.68 37.16 0.36 -0.97 16 2 C -0.10 -1.15 4.70 -26.73 -0.13 -1.27 16 3 C -0.11 -1.31 1.88 -91.77 -0.17 -1.48 16 4 H 0.10 1.10 7.50 -51.93 -0.39 0.71 16 5 C -0.15 -1.54 8.67 37.16 0.32 -1.22 16 6 C 0.52 8.02 6.98 -10.98 -0.08 7.94 16 7 O -0.55 -10.09 15.39 5.56 0.09 -10.01 16 8 N -0.59 -9.25 2.60 -165.34 -0.43 -9.68 16 9 C 0.07 1.03 5.15 -3.60 -0.02 1.02 16 10 C 0.15 2.96 5.58 -3.60 -0.02 2.94 16 11 N -0.58 -12.19 2.81 -163.27 -0.46 -12.65 16 12 C -0.26 -6.18 7.48 -15.06 -0.11 -6.30 16 13 H 0.10 2.25 3.79 -52.49 -0.20 2.05 16 14 C 0.01 0.34 4.80 -17.43 -0.08 0.25 16 15 N -0.89 -22.80 11.26 55.49 0.62 -22.17 16 16 Si 0.90 20.66 29.61 -169.99 -5.03 15.62 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.16 2.88 3.57 -66.37 -0.24 2.64 16 21 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 22 C -0.57 -9.40 6.27 38.14 0.24 -9.16 16 23 S 2.36 41.47 5.81 -107.50 -0.63 40.85 16 24 O -0.91 -19.52 15.19 -57.73 -0.88 -20.40 16 25 O -0.97 -18.77 18.16 -57.73 -1.05 -19.82 16 26 C -0.60 -9.34 6.70 37.67 0.25 -9.08 16 27 C 0.14 2.34 2.90 -67.65 -0.20 2.14 16 28 H 0.11 1.75 6.95 -51.93 -0.36 1.39 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.07 0.57 6.27 -51.93 -0.33 0.25 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.70 5.48 -51.93 -0.28 0.42 16 37 H 0.07 1.07 6.90 -51.93 -0.36 0.71 16 38 H 0.09 1.11 4.28 -51.92 -0.22 0.88 16 39 H 0.11 2.40 5.85 -51.93 -0.30 2.09 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 42 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.16 2.74 6.15 -51.93 -0.32 2.42 16 44 H 0.14 2.15 6.48 -51.93 -0.34 1.81 16 45 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -31.48 344.08 -8.81 -40.30 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.37 Total: 5.32 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 0.13 Total: -12.55 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.26 Total: -44.50 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -1.84 Total: -50.22 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 41.47 SS G_CDS: -0.63 Total: 40.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.48 -8.81 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094608845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.209 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds