Wall clock time and date at job start Tue Mar 31 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46836 * 2 1 4 4 H 1.08995 * 109.47637 * 54.99681 * 3 2 1 5 5 C 1.53000 * 109.47076 * 294.99441 * 3 2 1 6 6 C 1.50702 * 109.46958 * 174.99659 * 3 2 1 7 7 O 1.21285 * 119.99824 * 23.05765 * 6 3 2 8 8 N 1.34777 * 120.00281 * 203.04863 * 6 3 2 9 9 C 1.46511 * 120.99963 * 0.91924 * 8 6 3 10 10 C 1.52242 * 110.85677 * 128.68604 * 9 8 6 11 11 N 1.44372 * 114.56692 * 28.27972 * 10 9 8 12 12 C 1.36927 * 116.86710 * 157.09487 * 11 10 9 13 13 H 1.08002 * 119.99835 * 203.49435 * 12 11 10 14 14 C 1.38810 * 120.00332 * 23.49902 * 12 11 10 15 15 N 1.31621 * 119.99964 * 16.29195 * 14 12 11 16 16 Si 1.86793 * 120.00284 * 196.29526 * 14 12 11 17 17 H 1.48503 * 109.47214 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47411 * 120.00058 * 16 14 12 19 19 H 1.48501 * 109.47412 * 239.99821 * 16 14 12 20 20 C 1.45347 * 126.26075 * 337.07632 * 11 10 9 21 21 H 1.08991 * 108.89629 * 152.73061 * 20 11 10 22 22 C 1.54138 * 109.17619 * 272.30109 * 20 11 10 23 23 S 1.82810 * 105.43721 * 146.41981 * 22 20 11 24 24 O 1.42103 * 109.34347 * 245.40462 * 23 22 20 25 25 O 1.42103 * 109.46425 * 112.26031 * 23 22 20 26 26 C 1.83202 * 97.07991 * 358.81390 * 23 22 20 27 27 C 1.46848 * 121.00586 * 181.19536 * 8 6 3 28 28 H 1.09006 * 110.39671 * 119.62403 * 27 8 6 29 29 H 1.09004 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47153 * 300.00182 * 1 2 3 31 31 H 1.08998 * 109.47382 * 60.00469 * 1 2 3 32 32 H 1.08993 * 109.47137 * 239.99734 * 2 1 3 33 33 H 1.09001 * 109.46667 * 119.99439 * 2 1 3 34 34 H 1.08997 * 109.47324 * 300.31295 * 5 3 2 35 35 H 1.09003 * 109.46909 * 60.31386 * 5 3 2 36 36 H 1.09001 * 109.47380 * 180.30752 * 5 3 2 37 37 H 1.09007 * 109.15234 * 249.18006 * 9 8 6 38 38 H 1.08998 * 109.15701 * 8.34424 * 9 8 6 39 39 H 1.08994 * 108.60935 * 266.86870 * 10 9 8 40 40 H 1.08997 * 108.33588 * 149.49506 * 10 9 8 41 41 H 0.97001 * 120.00247 * 179.97438 * 15 14 12 42 42 H 1.09001 * 110.25575 * 27.42823 * 22 20 11 43 43 H 1.09000 * 110.32840 * 265.44427 * 22 20 11 44 44 H 1.08999 * 110.72000 * 219.08556 * 26 23 22 45 45 H 1.09007 * 110.71641 * 95.81590 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5418 1.4443 0.1239 7 8 4.1789 0.4671 -0.2079 8 7 4.1772 2.5320 0.6033 9 6 3.4281 3.7169 1.0291 10 6 3.8443 4.1473 2.4289 11 7 5.2019 3.8065 2.7828 12 6 5.7880 4.5485 3.7732 13 1 6.8642 4.6191 3.8300 14 6 4.9990 5.2098 4.7044 15 7 3.7320 4.8819 4.8448 16 14 5.7352 6.5651 5.7581 17 1 7.1681 6.7402 5.4093 18 1 5.0064 7.8352 5.5113 19 1 5.6167 6.1971 7.1919 20 6 6.0061 2.7514 2.1891 21 1 7.0590 3.0194 2.2747 22 6 5.7467 1.4321 2.9429 23 16 5.8836 0.1160 1.6816 24 8 4.6177 -0.5070 1.5120 25 8 7.0326 -0.6769 1.9473 26 6 6.2185 1.2090 0.2500 27 6 5.6414 2.5674 0.7091 28 1 6.0467 3.3771 0.1021 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0654 1.5842 -2.1494 35 1 0.5487 2.1300 -1.3944 36 1 2.0032 3.1525 -1.3098 37 1 3.6187 4.5310 0.3296 38 1 2.3627 3.4866 1.0266 39 1 3.1726 3.6818 3.1500 40 1 3.7292 5.2286 2.5036 41 1 3.1808 5.3437 5.4957 42 1 4.7470 1.4359 3.3773 43 1 6.4955 1.2876 3.7217 44 1 5.6997 0.8502 -0.6389 45 1 7.2903 1.2874 0.0671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094608846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:12 Heat of formation + Delta-G solvation = -32.615893 kcal Electronic energy + Delta-G solvation = -29515.668549 eV Core-core repulsion = 25663.293303 eV Total energy + Delta-G solvation = -3852.375246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.68127 -37.77988 -36.35205 -35.53218 -35.27494 -34.39308 -33.47157 -31.11910 -29.79644 -28.56058 -27.95865 -25.33976 -24.90555 -23.62871 -22.56679 -21.38604 -19.54014 -18.59266 -18.23083 -17.32678 -16.58373 -16.47645 -16.08420 -15.33782 -15.11758 -15.07333 -14.66384 -14.40668 -14.25603 -13.72942 -13.62892 -13.43817 -13.29523 -12.99170 -12.67697 -12.44741 -12.31559 -12.09997 -11.88448 -11.62818 -11.51271 -11.37875 -11.29897 -11.26595 -11.00664 -10.91369 -10.67879 -10.65360 -10.53244 -10.43978 -10.26745 -10.18855 -9.90565 -9.65426 -8.78732 -8.67441 -8.29397 -7.01792 -5.92793 -3.47489 0.72522 2.86058 3.12136 3.21843 3.25660 3.33776 3.34966 4.13668 4.30328 4.58864 4.70942 4.82580 4.90208 5.03660 5.08574 5.14057 5.25357 5.32742 5.36320 5.45527 5.49669 5.54288 5.58885 5.65869 5.70783 5.81736 5.86855 5.91222 5.94765 5.98625 6.08473 6.09904 6.21128 6.31074 6.42502 6.54240 6.60961 6.73943 7.10641 7.49735 7.60062 7.69415 8.20687 8.46371 9.01294 9.62645 9.96653 11.04565 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.005614 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.462697 B = 4986.123107 C = 6241.561465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.107 4.107 4 H 0.094 0.906 5 C -0.142 4.142 6 C 0.516 3.484 7 O -0.518 6.518 8 N -0.608 5.608 9 C 0.088 3.912 10 C 0.163 3.837 11 N -0.571 5.571 12 C -0.273 4.273 13 H 0.074 0.926 14 C 0.009 3.991 15 N -0.900 5.900 16 Si 0.907 3.093 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.186 3.814 21 H 0.085 0.915 22 C -0.600 4.600 23 S 2.382 3.618 24 O -0.919 6.919 25 O -0.972 6.972 26 C -0.607 4.607 27 C 0.143 3.857 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.255 0.745 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.187 0.813 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 -2.785 -10.819 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.128 4.128 4 H 0.112 0.888 5 C -0.199 4.199 6 C 0.305 3.695 7 O -0.397 6.397 8 N -0.342 5.342 9 C -0.035 4.035 10 C 0.037 3.963 11 N -0.292 5.292 12 C -0.402 4.402 13 H 0.092 0.908 14 C -0.191 4.191 15 N -0.544 5.544 16 Si 0.737 3.263 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.216 1.216 20 C 0.074 3.926 21 H 0.102 0.898 22 C -0.734 4.734 23 S 2.566 3.434 24 O -0.915 6.915 25 O -0.968 6.968 26 C -0.736 4.736 27 C 0.038 3.962 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.203 0.797 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.482 -4.224 -10.837 12.142 hybrid contribution 0.391 1.775 0.880 2.019 sum -3.091 -2.449 -9.958 10.710 Atomic orbital electron populations 1.21852 0.96084 1.01511 1.01568 1.21343 0.94613 0.94164 1.04142 1.21303 0.91872 0.99424 1.00230 0.88752 1.21789 1.01952 1.00260 0.95939 1.20664 0.90629 0.81322 0.76841 1.90462 1.65953 1.33582 1.49659 1.47873 1.06221 1.16370 1.63746 1.22356 0.96279 0.85950 0.98927 1.20560 0.86201 0.99984 0.89527 1.42950 1.11802 1.33432 1.41015 1.19382 0.91808 1.23596 1.05457 0.90836 1.25043 0.96180 1.00593 0.97239 1.70068 1.06423 1.41607 1.36309 0.86151 0.78646 0.81627 0.79912 1.20162 1.21403 1.21619 1.20802 0.97221 0.86577 0.88026 0.89763 1.31332 1.11671 1.15110 1.15280 1.09180 0.75509 0.78852 0.79833 1.93632 1.40429 1.73633 1.83835 1.93510 1.51775 1.67294 1.84265 1.31721 1.09004 1.10252 1.22636 1.21939 0.80335 0.96626 0.97310 0.87747 0.92773 0.92763 0.92817 0.91274 0.90332 0.92200 0.91378 0.92285 0.92325 0.89714 0.92056 0.92019 0.93420 0.84838 0.85578 0.79669 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.10 -1.40 4.82 -26.73 -0.13 -1.53 16 3 C -0.11 -1.41 1.88 -91.77 -0.17 -1.59 16 4 H 0.09 1.22 6.30 -51.93 -0.33 0.89 16 5 C -0.14 -1.49 8.83 37.16 0.33 -1.16 16 6 C 0.52 8.18 5.69 -10.98 -0.06 8.12 16 7 O -0.52 -9.11 8.20 -20.04 -0.16 -9.28 16 8 N -0.61 -9.54 2.79 -165.05 -0.46 -10.00 16 9 C 0.09 1.36 5.97 -4.42 -0.03 1.33 16 10 C 0.16 3.31 4.90 -5.56 -0.03 3.28 16 11 N -0.57 -12.27 2.72 -167.63 -0.46 -12.73 16 12 C -0.27 -6.63 9.33 -15.06 -0.14 -6.77 16 13 H 0.07 1.76 7.69 -52.49 -0.40 1.35 16 14 C 0.01 0.22 4.88 -17.43 -0.09 0.14 16 15 N -0.90 -23.41 10.50 55.49 0.58 -22.83 16 16 Si 0.91 20.07 29.58 -169.99 -5.03 15.04 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.19 3.37 2.82 -67.68 -0.19 3.18 16 21 H 0.08 1.45 7.76 -51.93 -0.40 1.05 16 22 C -0.60 -10.98 6.81 37.75 0.26 -10.72 16 23 S 2.38 42.34 5.62 -107.50 -0.60 41.73 16 24 O -0.92 -18.50 13.96 -67.74 -0.95 -19.44 16 25 O -0.97 -19.68 18.15 -57.73 -1.05 -20.73 16 26 C -0.61 -9.01 6.15 37.98 0.23 -8.77 16 27 C 0.14 2.23 3.53 -66.65 -0.24 2.00 16 28 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.60 6.58 -51.93 -0.34 0.26 16 36 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.14 5.36 -51.93 -0.28 0.86 16 39 H 0.06 1.43 6.80 -51.93 -0.35 1.08 16 40 H 0.06 1.37 7.17 -51.93 -0.37 1.00 16 41 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 42 H 0.13 2.71 8.04 -51.93 -0.42 2.29 16 43 H 0.13 2.22 8.14 -51.93 -0.42 1.79 16 44 H 0.19 2.83 5.17 -55.95 -0.29 2.55 16 45 H 0.12 1.46 8.14 -51.92 -0.42 1.03 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -30.99 344.72 -9.68 -40.67 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.86 Total: 6.11 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 0.11 Total: -13.74 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.33 Total: -45.56 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -2.16 Total: -49.45 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Atomic # 16 Polarization: 42.34 SS G_CDS: -0.60 Total: 41.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.99 -9.68 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094608846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.053 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds