Wall clock time and date at job start Tue Mar 31 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 S 1.81404 * 109.46946 * 180.02562 * 3 2 1 5 5 O 1.42099 * 108.57494 * 294.48765 * 4 3 2 6 6 O 1.42093 * 108.57831 * 65.51210 * 4 3 2 7 7 C 1.81393 * 101.92151 * 180.02562 * 4 3 2 8 8 C 1.50700 * 109.47292 * 180.02562 * 7 4 3 9 9 O 1.21279 * 119.99916 * 359.97438 * 8 7 4 10 10 N 1.34782 * 120.00008 * 180.02562 * 8 7 4 11 11 C 1.47380 * 135.85430 * 359.62941 * 10 8 7 12 12 C 1.52075 * 87.41370 * 154.38939 * 11 10 8 13 13 C 1.47387 * 135.84838 * 180.02562 * 10 8 7 14 14 C 1.53505 * 117.21275 * 267.28169 * 12 11 10 15 15 C 1.54630 * 102.70180 * 262.92854 * 14 12 11 16 16 N 1.47143 * 107.37747 * 339.38234 * 15 14 12 17 17 C 1.36941 * 125.58374 * 179.12557 * 16 15 14 18 18 H 1.07997 * 120.00209 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99924 * 359.97438 * 17 16 15 20 20 N 1.31624 * 119.99635 * 0.02562 * 19 17 16 21 21 Si 1.86786 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47538 * 59.99915 * 21 19 17 23 23 H 1.48498 * 109.47326 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47097 * 299.99811 * 21 19 17 25 25 C 1.47754 * 108.83978 * 359.09118 * 16 15 14 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 33 33 H 1.09005 * 109.47147 * 299.99853 * 7 4 3 34 34 H 1.09008 * 109.47605 * 59.99893 * 7 4 3 35 35 H 1.09003 * 113.54675 * 269.00166 * 11 10 8 36 36 H 1.08999 * 113.54600 * 39.67359 * 11 10 8 37 37 H 1.08996 * 113.54780 * 320.31672 * 13 10 8 38 38 H 1.08997 * 113.54475 * 90.93254 * 13 10 8 39 39 H 1.09001 * 110.77000 * 21.22752 * 14 12 11 40 40 H 1.08998 * 110.76747 * 144.62278 * 14 12 11 41 41 H 1.08994 * 109.87036 * 98.83266 * 15 14 12 42 42 H 1.09004 * 109.86855 * 219.80295 * 15 14 12 43 43 H 0.97003 * 119.99724 * 180.02562 * 20 19 17 44 44 H 1.08997 * 110.40475 * 263.50287 * 25 16 15 45 45 H 1.08997 * 110.40733 * 141.07978 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3072 0.8840 1.2248 6 8 4.3062 0.8844 -1.2268 7 6 4.2287 3.2174 0.0001 8 6 5.7226 3.4154 -0.0010 9 8 6.4618 2.4539 -0.0018 10 7 6.2373 4.6611 -0.0001 11 6 5.6924 6.0305 -0.0047 12 6 6.9873 6.4741 0.6580 13 6 7.5899 5.2465 -0.0011 14 6 7.0097 6.5236 2.1921 15 6 6.7240 8.0142 2.4883 16 7 7.0537 8.7748 1.2726 17 6 6.9226 10.1294 1.1202 18 1 7.1930 10.5962 0.1846 19 6 6.4422 10.9026 2.1682 20 7 6.1132 10.3336 3.3087 21 14 6.2628 12.7501 1.9601 22 1 5.3237 13.0338 0.8453 23 1 5.7340 13.3407 3.2158 24 1 7.5886 13.3448 1.6540 25 6 7.5500 7.8380 0.2435 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.8006 3.6795 -0.8894 34 1 3.8013 3.6786 0.8906 35 1 5.5527 6.4402 -1.0050 36 1 4.8136 6.1516 0.6287 37 1 8.2958 4.7128 0.6353 38 1 7.9817 5.4356 -1.0005 39 1 6.2280 5.8898 2.6107 40 1 7.9888 6.2345 2.5738 41 1 5.6707 8.1477 2.7345 42 1 7.3441 8.3523 3.3186 43 1 5.7772 10.8739 4.0409 44 1 8.6398 7.8155 0.2440 45 1 7.1753 8.1207 -0.7402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148784143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:25 Heat of formation + Delta-G solvation = -38.307785 kcal Electronic energy + Delta-G solvation = -26513.418769 eV Core-core repulsion = 22660.796704 eV Total energy + Delta-G solvation = -3852.622065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.82819 -38.62928 -37.15154 -36.20431 -35.80000 -35.26655 -32.40451 -31.24230 -29.36328 -28.59245 -28.07478 -26.13677 -25.68978 -23.75644 -22.40087 -20.41212 -19.82323 -19.02452 -18.44095 -17.58060 -16.83274 -16.77630 -16.76083 -16.31459 -15.91552 -15.40527 -15.21686 -14.79075 -14.39610 -14.26889 -13.99874 -13.87201 -13.17458 -13.00629 -13.00316 -12.82593 -12.53827 -12.37458 -12.20308 -12.13891 -12.05310 -11.91775 -11.91201 -11.37886 -11.32081 -11.10047 -10.99032 -10.77677 -10.74693 -10.60802 -10.36990 -10.21041 -10.01344 -9.88017 -9.70869 -8.77027 -8.67209 -6.92483 -5.78884 -3.13010 -0.40447 2.32892 2.46899 2.59394 3.35067 3.39964 3.41062 3.41821 3.71438 4.01884 4.13356 4.21725 4.39360 4.52321 4.57537 4.64957 4.81322 4.86417 4.89629 5.07339 5.11126 5.16437 5.33139 5.42107 5.48968 5.51265 5.53896 5.56847 5.61576 5.70019 5.71364 5.74503 6.04487 6.14376 6.36530 6.41836 6.55981 6.61530 7.47194 7.52440 7.57281 7.74325 7.81290 8.16792 9.13627 9.73563 10.38701 11.32583 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.002510 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.938750 B =11151.201403 C =11902.496429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.619 4.619 4 S 2.451 3.549 5 O -0.919 6.919 6 O -0.921 6.921 7 C -0.654 4.654 8 C 0.568 3.432 9 O -0.538 6.538 10 N -0.633 5.633 11 C 0.117 3.883 12 C -0.106 4.106 13 C 0.119 3.881 14 C -0.119 4.119 15 C 0.179 3.821 16 N -0.605 5.605 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.154 3.846 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 -15.738 -7.234 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.748 4.748 4 S 2.628 3.372 5 O -0.916 6.916 6 O -0.919 6.919 7 C -0.781 4.781 8 C 0.355 3.645 9 O -0.416 6.416 10 N -0.367 5.367 11 C -0.005 4.005 12 C -0.108 4.108 13 C -0.003 4.003 14 C -0.157 4.157 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.027 3.973 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.227 -16.938 -7.085 20.548 hybrid contribution -0.859 2.018 -0.081 2.195 sum -10.086 -14.920 -7.166 19.382 Atomic orbital electron populations 1.21733 0.93808 1.02435 1.02434 1.21275 0.98449 0.91717 1.04131 1.30484 1.25839 1.06621 1.11852 1.07457 0.77464 0.76391 0.75840 1.93586 1.78591 1.73675 1.45735 1.93575 1.78709 1.73744 1.45826 1.30839 1.03116 1.30705 1.13461 1.18516 0.87188 0.82052 0.76707 1.90852 1.60776 1.38562 1.51453 1.49663 1.11436 1.04316 1.71328 1.23009 0.98730 0.77628 1.01148 1.22200 0.95409 0.95346 0.97807 1.22890 0.85407 0.90854 1.01163 1.22498 1.01176 1.00649 0.91369 1.21226 0.99970 0.83980 0.89353 1.44537 1.76082 1.02762 1.09765 1.18998 1.37325 0.80887 0.98617 0.90413 1.24804 1.01334 0.98199 0.96029 1.69948 1.49559 1.33928 1.03492 0.86192 0.77855 0.84881 0.76760 1.21183 1.21622 1.21144 1.21135 0.96337 0.86527 0.93292 0.92159 0.92217 0.91842 0.90057 0.89993 0.84792 0.84673 0.82472 0.82255 0.89040 0.89838 0.89938 0.89256 0.92052 0.91556 0.93521 0.93689 0.93647 0.95392 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.76 5.94 -26.73 -0.16 -0.92 16 3 C -0.62 -3.50 5.81 37.16 0.22 -3.28 16 4 S 2.45 25.86 3.96 -107.50 -0.43 25.43 16 5 O -0.92 -13.36 17.95 -59.52 -1.07 -14.43 16 6 O -0.92 -13.06 17.95 -59.53 -1.07 -14.13 16 7 C -0.65 -6.08 6.11 36.01 0.22 -5.86 16 8 C 0.57 8.41 8.10 -10.98 -0.09 8.32 16 9 O -0.54 -10.07 16.39 2.56 0.04 -10.03 16 10 N -0.63 -8.86 3.70 -185.73 -0.69 -9.54 16 11 C 0.12 1.53 7.78 -7.34 -0.06 1.47 16 12 C -0.11 -1.62 1.06 -155.21 -0.16 -1.78 16 13 C 0.12 1.63 8.03 -7.47 -0.06 1.57 16 14 C -0.12 -2.05 6.41 -25.61 -0.16 -2.21 16 15 C 0.18 4.04 5.39 -2.83 -0.02 4.02 16 16 N -0.60 -14.22 3.41 -170.54 -0.58 -14.80 16 17 C -0.23 -6.02 10.28 -15.06 -0.15 -6.18 16 18 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -25.91 10.30 55.49 0.57 -25.34 16 21 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.15 2.79 6.70 -3.22 -0.02 2.77 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.16 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.16 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 1.16 7.39 -51.93 -0.38 0.78 16 42 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -37.36 380.65 -10.17 -47.53 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.49 Total: -3.84 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.18 Total: -2.76 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.70 Total: -49.69 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -2.09 Total: -38.59 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 25.86 SS G_CDS: -0.43 Total: 25.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.36 -10.17 -47.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148784143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.222 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds