Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46998 * 270.00269 * 3 2 1 5 5 H 1.48501 * 109.47081 * 29.99838 * 3 2 1 6 6 H 1.48496 * 109.47150 * 150.00422 * 3 2 1 7 7 C 1.38810 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99500 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00446 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00053 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46829 * 185.67394 * 10 9 7 12 12 C 1.53001 * 115.54856 * 279.66108 * 11 10 9 13 13 C 1.52989 * 109.47517 * 295.72111 * 12 11 10 14 14 N 1.46506 * 109.47247 * 183.96351 * 13 12 11 15 15 C 1.34773 * 120.00116 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00006 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99984 * 179.97438 * 15 14 13 18 18 H 1.08996 * 109.64555 * 300.43030 * 17 15 14 19 19 C 1.53880 * 109.64772 * 180.02562 * 17 15 14 20 20 C 1.55045 * 106.62622 * 192.96657 * 19 17 15 21 21 S 1.83289 * 102.56398 * 42.43661 * 20 19 17 22 22 O 1.42096 * 109.35438 * 90.18756 * 21 20 19 23 23 O 1.42102 * 109.35060 * 223.38771 * 21 20 19 24 24 C 1.54165 * 109.64748 * 60.72685 * 17 15 14 25 25 C 1.53004 * 117.49625 * 133.96013 * 11 10 9 26 26 C 1.52999 * 117.50144 * 65.33849 * 11 10 9 27 27 H 0.96990 * 120.00144 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99660 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47068 * 65.67738 * 10 9 7 30 30 H 1.08993 * 109.47157 * 305.67624 * 10 9 7 31 31 H 1.09003 * 109.47002 * 55.72593 * 12 11 10 32 32 H 1.09009 * 109.46738 * 175.72071 * 12 11 10 33 33 H 1.08996 * 109.47402 * 303.96181 * 13 12 11 34 34 H 1.09001 * 109.47466 * 63.96161 * 13 12 11 35 35 H 0.97002 * 119.99832 * 0.02562 * 14 13 12 36 36 H 1.09006 * 110.02795 * 312.26134 * 19 17 15 37 37 H 1.09003 * 110.02757 * 73.62725 * 19 17 15 38 38 H 1.09003 * 110.79007 * 160.70028 * 20 19 17 39 39 H 1.09002 * 110.79214 * 283.97664 * 20 19 17 40 40 H 1.08999 * 110.31947 * 266.66423 * 24 17 15 41 41 H 1.09004 * 110.31327 * 28.86108 * 24 17 15 42 42 H 1.08997 * 117.49788 * 359.97438 * 25 11 10 43 43 H 1.08996 * 117.49803 * 145.02152 * 25 11 10 44 44 H 1.08999 * 117.49885 * 214.98145 * 26 11 10 45 45 H 1.08999 * 117.49445 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0700 -4.8161 -0.1440 12 6 0.3525 -5.2332 1.1413 13 6 1.3746 -5.7726 2.1439 14 7 0.6781 -6.2594 3.3373 15 6 1.3809 -6.7831 4.3612 16 8 2.5900 -6.8509 4.2947 17 6 0.6645 -7.2833 5.5889 18 1 0.1003 -6.4679 6.0417 19 6 1.6889 -7.8269 6.6003 20 6 0.8847 -8.6139 7.6669 21 16 -0.3299 -9.5361 6.6503 22 8 0.2185 -10.7962 6.2892 23 8 -1.6082 -9.4687 7.2674 24 6 -0.2985 -8.4223 5.1992 25 6 1.4114 -5.9156 -1.1518 26 6 0.2887 -4.9215 -1.4553 27 1 -0.4850 0.8399 0.0004 28 1 0.3557 -2.3881 0.0002 29 1 2.6072 -3.7602 0.9343 30 1 2.7582 -3.6714 -0.8370 31 1 -0.1563 -4.3698 1.5700 32 1 -0.3781 -6.0096 0.9140 33 1 1.9323 -6.5914 1.6894 34 1 2.0634 -4.9758 2.4249 35 1 -0.2890 -6.2055 3.3903 36 1 2.3928 -8.4909 6.0984 37 1 2.2245 -7.0015 7.0694 38 1 1.5331 -9.2999 8.2120 39 1 0.3814 -7.9323 8.3528 40 1 -1.2949 -8.0256 5.0044 41 1 0.0767 -8.9521 4.3236 42 1 2.3397 -5.8128 -1.7135 43 1 1.1249 -6.9365 -0.8991 44 1 -0.7364 -5.2882 -1.4023 45 1 0.4784 -4.1646 -2.2163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166040652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = -78.200104 kcal Electronic energy + Delta-G solvation = -25935.135014 eV Core-core repulsion = 22080.783089 eV Total energy + Delta-G solvation = -3854.351926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29839 -38.38588 -37.49241 -36.55905 -36.20124 -35.05008 -33.90878 -31.19265 -30.75857 -29.70747 -26.45600 -25.88980 -23.94005 -22.84603 -22.34423 -21.72543 -20.50422 -19.31528 -18.67770 -17.77465 -17.39569 -17.06935 -16.63454 -16.16669 -15.90765 -15.67168 -15.13683 -14.74809 -14.65511 -14.50143 -14.31477 -13.90601 -13.43935 -13.19467 -12.92224 -12.75544 -12.70273 -12.60294 -12.46412 -12.45560 -12.26009 -12.02578 -11.75374 -11.49843 -11.34619 -11.22820 -11.01479 -10.87119 -10.85547 -10.61504 -10.17149 -10.00107 -9.92796 -9.73418 -9.34714 -9.19580 -8.87258 -6.92341 -5.78465 -3.06350 -0.46571 1.97487 2.33342 2.84467 3.11227 3.41881 3.47394 3.48750 3.53032 3.83670 3.93659 4.02491 4.09646 4.21418 4.37419 4.59790 4.64049 4.88943 4.90072 4.92998 5.02881 5.10217 5.14308 5.24501 5.34290 5.45570 5.51827 5.53917 5.62573 5.68720 5.88016 6.02388 6.13090 6.22614 6.29515 6.37124 6.40136 6.49632 6.72734 6.81061 7.26775 7.68466 7.96438 8.40798 9.52437 10.10670 10.46384 11.44373 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002282 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.210353 B =12268.150106 C =13020.028051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.186 3.814 11 C -0.123 4.123 12 C -0.089 4.089 13 C 0.120 3.880 14 N -0.723 5.723 15 C 0.522 3.478 16 O -0.532 6.532 17 C -0.105 4.105 18 H 0.121 0.879 19 C -0.103 4.103 20 C -0.586 4.586 21 S 2.393 3.607 22 O -0.933 6.933 23 O -0.936 6.936 24 C -0.594 4.594 25 C -0.177 4.177 26 C -0.160 4.160 27 H 0.254 0.746 28 H 0.385 0.615 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.401 0.599 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 -19.559 12.188 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.059 3.941 11 C -0.124 4.124 12 C -0.126 4.126 13 C -0.003 4.003 14 N -0.374 5.374 15 C 0.306 3.694 16 O -0.408 6.408 17 C -0.127 4.127 18 H 0.139 0.861 19 C -0.142 4.142 20 C -0.716 4.716 21 S 2.576 3.424 22 O -0.930 6.930 23 O -0.933 6.933 24 C -0.722 4.722 25 C -0.215 4.215 26 C -0.197 4.197 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.235 0.765 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.596 -20.316 12.303 23.805 hybrid contribution 0.009 1.839 -0.260 1.858 sum -1.587 -18.477 12.044 22.113 Atomic orbital electron populations 1.69657 1.05068 1.25578 1.57936 1.24719 0.95519 0.97621 1.03134 0.86203 0.78679 0.83886 0.77519 1.21755 1.21798 1.20785 1.19236 0.91024 0.84192 1.42465 0.91281 1.42305 1.05886 0.99625 1.89338 1.20218 0.91825 0.84131 0.97947 1.21567 1.02097 0.98768 0.89934 1.21230 0.96767 1.00858 0.93773 1.21473 0.95463 0.99388 0.83971 1.46033 1.10816 1.62493 1.18010 1.20025 0.87672 0.77880 0.83829 1.90753 1.13747 1.55647 1.80642 1.21758 0.96525 0.98602 0.95819 0.86080 1.22069 0.97207 1.02178 0.92764 1.30652 1.16134 1.13814 1.10992 1.09025 0.76918 0.77330 0.79121 1.93642 1.79835 1.37057 1.82443 1.93631 1.38100 1.87396 1.74204 1.30636 1.08207 1.12679 1.20723 1.23025 1.00403 0.94531 1.03529 1.22900 0.95829 1.01814 0.99140 0.93578 0.78172 0.96103 0.95909 0.90084 0.91903 0.91332 0.90384 0.76511 0.88172 0.87554 0.84004 0.84147 0.83395 0.83887 0.88932 0.89413 0.89408 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.85 5.56 -59.91 -0.33 -18.19 16 10 C 0.19 3.65 6.12 -4.04 -0.02 3.63 16 11 C -0.12 -1.86 1.53 -154.51 -0.24 -2.09 16 12 C -0.09 -1.12 5.21 -26.74 -0.14 -1.26 16 13 C 0.12 1.49 5.44 -4.04 -0.02 1.47 16 14 N -0.72 -7.00 5.47 -60.30 -0.33 -7.33 16 15 C 0.52 5.37 7.00 -10.99 -0.08 5.29 16 16 O -0.53 -7.65 15.80 5.55 0.09 -7.56 16 17 C -0.10 -0.62 2.94 -90.71 -0.27 -0.89 16 18 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 19 C -0.10 -0.59 5.27 -25.19 -0.13 -0.72 16 20 C -0.59 -2.22 7.31 38.24 0.28 -1.94 16 21 S 2.39 14.41 6.11 -107.50 -0.66 13.76 16 22 O -0.93 -9.37 18.15 -57.71 -1.05 -10.42 16 23 O -0.94 -8.79 18.15 -57.71 -1.05 -9.83 16 24 C -0.59 -2.69 6.61 37.77 0.25 -2.44 16 25 C -0.18 -2.29 9.90 -26.73 -0.26 -2.55 16 26 C -0.16 -2.33 9.90 -26.73 -0.26 -2.59 16 27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.38 9.89 7.68 -40.82 -0.31 9.58 16 29 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 30 H 0.02 0.46 7.94 -51.93 -0.41 0.05 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.66 8.10 -51.92 -0.42 0.24 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.18 6.88 -51.93 -0.36 0.82 16 35 H 0.40 2.74 8.41 -40.82 -0.34 2.39 16 36 H 0.10 0.67 7.72 -51.93 -0.40 0.26 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.14 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.15 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.14 0.66 7.88 -51.93 -0.41 0.25 16 42 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -38.11 382.76 -10.20 -48.31 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.19 Total: 6.60 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.15 Total: -11.33 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.06 Total: -52.55 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -2.01 Total: -27.81 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 14.41 SS G_CDS: -0.66 Total: 13.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.11 -10.20 -48.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166040652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.889 kcal (2) G-P(sol) polarization free energy of solvation -38.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds