Wall clock time and date at job start Tue Mar 31 2020 06:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.49917 * 2 1 4 4 C 1.53189 * 109.49543 * 239.93546 * 2 1 3 5 5 N 1.47002 * 108.73948 * 294.65575 * 4 2 1 6 6 C 1.34777 * 120.61662 * 126.38770 * 5 4 2 7 7 O 1.21283 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00113 * 180.02562 * 6 5 4 9 9 C 1.53045 * 113.15132 * 280.55246 * 8 6 5 10 10 S 1.81504 * 89.85896 * 211.86407 * 9 8 6 11 11 O 1.42098 * 112.71944 * 280.42476 * 10 9 8 12 12 O 1.42099 * 112.85791 * 136.67996 * 10 9 8 13 13 C 1.53035 * 113.15366 * 180.11822 * 8 6 5 14 14 C 1.46926 * 118.74977 * 306.40898 * 5 4 2 15 15 C 1.53190 * 108.77833 * 53.61184 * 14 5 4 16 16 C 1.53037 * 109.49715 * 120.06819 * 2 1 3 17 17 H 1.09004 * 109.45762 * 178.61003 * 16 2 1 18 18 C 1.53003 * 109.45828 * 298.56024 * 16 2 1 19 19 N 1.46506 * 109.47148 * 185.00381 * 18 16 2 20 20 C 1.36934 * 119.99814 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00575 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99823 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99821 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00128 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47194 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47425 * 119.99350 * 24 22 20 27 27 H 1.48498 * 109.47081 * 239.99576 * 24 22 20 28 28 H 1.09001 * 109.47002 * 299.99771 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00209 * 1 2 3 30 30 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.58913 * 54.47031 * 4 2 1 32 32 H 1.09000 * 109.58643 * 174.89508 * 4 2 1 33 33 H 1.09004 * 112.49420 * 50.33010 * 8 6 5 34 34 H 1.09000 * 113.14548 * 327.10747 * 9 8 6 35 35 H 1.09000 * 113.15367 * 96.59399 * 9 8 6 36 36 H 1.09003 * 113.15253 * 263.40542 * 13 8 6 37 37 H 1.08999 * 113.14880 * 32.89205 * 13 8 6 38 38 H 1.09004 * 109.58707 * 293.81615 * 14 5 4 39 39 H 1.09003 * 109.69985 * 173.46738 * 14 5 4 40 40 H 1.08998 * 109.49827 * 185.41622 * 15 14 5 41 41 H 1.08995 * 109.49841 * 65.30931 * 15 14 5 42 42 H 1.08994 * 109.47253 * 305.00465 * 18 16 2 43 43 H 1.09000 * 109.47107 * 65.00540 * 18 16 2 44 44 H 0.97003 * 119.99685 * 359.97438 * 19 18 16 45 45 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6515 -2.1385 -1.1690 6 6 0.9739 -2.7225 -2.1771 7 8 0.6806 -2.0798 -3.1630 8 6 0.5807 -4.1740 -2.0795 9 6 1.7303 -5.1317 -2.4012 10 16 0.5411 -6.3248 -3.0771 11 8 -0.1185 -7.0749 -2.0664 12 8 0.9787 -6.9103 -4.2957 13 6 -0.1787 -4.6758 -3.3097 14 6 2.0140 -2.9040 0.0316 15 6 1.5030 -2.1554 1.2666 16 6 2.0408 -0.7228 1.2485 17 1 3.1306 -0.7440 1.2354 18 6 1.5608 0.0177 2.4984 19 7 2.1469 -0.6029 3.6890 20 6 1.8580 -0.1069 4.9322 21 1 1.1984 0.7421 5.0351 22 6 2.4138 -0.6946 6.0603 23 7 3.2180 -1.7289 5.9350 24 14 2.0203 -0.0175 7.7562 25 1 1.0990 1.1398 7.6257 26 1 1.3741 -1.0753 8.5739 27 1 3.2754 0.4217 8.4173 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6007 -0.2725 -2.1390 32 1 3.1275 -0.6459 -1.2982 33 1 0.0782 -4.4077 -1.1408 34 1 2.4173 -4.7398 -3.1511 35 1 2.2457 -5.4964 -1.5127 36 1 -1.2610 -4.6588 -3.1817 37 1 0.1399 -4.1959 -4.2351 38 1 3.0980 -3.0043 0.0875 39 1 1.5573 -3.8928 -0.0113 40 1 1.8482 -2.6622 2.1678 41 1 0.4133 -2.1351 1.2547 42 1 1.8697 1.0615 2.4433 43 1 0.4738 -0.0368 2.5580 44 1 2.7390 -1.3657 3.5967 45 1 3.6061 -2.1399 6.7233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184457748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:46 Heat of formation + Delta-G solvation = -70.677567 kcal Electronic energy + Delta-G solvation = -27103.022914 eV Core-core repulsion = 23248.997190 eV Total energy + Delta-G solvation = -3854.025724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.79793 -38.56407 -37.74956 -36.56628 -36.09661 -35.05242 -33.40862 -31.82928 -30.39162 -27.43494 -27.07576 -27.01955 -24.49551 -23.43881 -23.07183 -21.36447 -19.84327 -19.25812 -18.55530 -17.95119 -17.05840 -16.94544 -16.72868 -16.25488 -15.80935 -15.51221 -15.10474 -14.63597 -14.47713 -14.08285 -13.86935 -13.81483 -13.72643 -13.38282 -12.95772 -12.67874 -12.65863 -12.63716 -12.53012 -12.35229 -12.22888 -11.99451 -11.64509 -11.53980 -11.31068 -11.10780 -10.97902 -10.84312 -10.79516 -10.40560 -10.32258 -10.24365 -10.00984 -9.85488 -9.68698 -8.90589 -8.71931 -6.95017 -5.81067 -3.08985 -0.32559 1.49059 2.32326 2.74781 3.21925 3.40267 3.46447 3.48246 3.58912 3.67112 4.07110 4.36351 4.41888 4.54994 4.68984 4.74976 4.87519 4.90610 4.94257 5.05291 5.15324 5.23945 5.38885 5.43237 5.48016 5.55870 5.64126 5.71148 5.77270 5.79532 5.97852 6.02370 6.12921 6.22339 6.30856 6.38863 6.39723 6.59412 6.75529 6.88146 7.21437 7.67188 7.92742 8.38423 9.49795 10.07557 10.42062 11.41965 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.002724 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.064275 B =10275.648435 C =11363.312353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.540 3.460 7 O -0.539 6.539 8 C -0.097 4.097 9 C -0.594 4.594 10 S 2.416 3.584 11 O -0.908 6.908 12 O -0.922 6.922 13 C -0.579 4.579 14 C 0.102 3.898 15 C -0.130 4.130 16 C -0.089 4.089 17 H 0.072 0.928 18 C 0.158 3.842 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.017 0.983 43 H 0.022 0.978 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -6.326 -19.904 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.006 4.006 5 N -0.331 5.331 6 C 0.326 3.674 7 O -0.416 6.416 8 C -0.121 4.121 9 C -0.722 4.722 10 S 2.596 3.404 11 O -0.905 6.905 12 O -0.919 6.919 13 C -0.707 4.707 14 C -0.021 4.021 15 C -0.168 4.168 16 C -0.108 4.108 17 H 0.090 0.910 18 C 0.031 3.969 19 N -0.377 5.377 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.300 -7.059 -20.482 22.087 hybrid contribution 0.276 1.323 1.448 1.981 sum -4.024 -5.736 -19.034 20.283 Atomic orbital electron populations 1.21864 0.94884 1.01922 1.01555 1.21477 0.96680 0.99550 0.94130 0.89941 1.21742 0.99534 0.79917 0.99363 1.48070 1.55252 1.11755 1.17997 1.19613 0.77576 0.87527 0.82702 1.90689 1.55080 1.64634 1.31181 1.21593 0.95470 0.95159 0.99845 1.31010 1.12669 1.14329 1.14154 1.08298 0.79656 0.76679 0.75723 1.93746 1.70882 1.67968 1.57930 1.93657 1.78670 1.76724 1.42821 1.30869 1.11390 1.22800 1.05684 1.21962 1.00863 0.94916 0.84325 1.22001 1.01495 0.96148 0.97147 1.21306 1.00288 0.94607 0.94553 0.90994 1.20712 0.95928 0.94659 0.85628 1.42386 1.56881 1.37523 1.00864 1.19265 1.22988 1.10803 0.83818 0.91247 1.24722 1.00073 0.98390 0.97828 1.69656 1.35753 1.24414 1.28462 0.86131 0.77422 0.78014 0.84716 1.20605 1.21867 1.21893 0.91865 0.93318 0.92664 0.89081 0.91368 0.84533 0.83341 0.84646 0.85175 0.82787 0.90775 0.89945 0.89191 0.91217 0.96491 0.96071 0.78324 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.38 37.16 0.31 -1.46 16 2 C -0.10 -1.18 2.72 -90.50 -0.25 -1.43 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.29 5.83 -3.67 -0.02 1.27 16 5 N -0.60 -6.38 2.41 -172.71 -0.42 -6.80 16 6 C 0.54 5.93 7.20 -10.99 -0.08 5.85 16 7 O -0.54 -7.57 15.36 5.55 0.09 -7.49 16 8 C -0.10 -0.72 2.47 -91.73 -0.23 -0.95 16 9 C -0.59 -3.10 7.15 37.18 0.27 -2.84 16 10 S 2.42 14.13 7.55 -107.50 -0.81 13.31 16 11 O -0.91 -8.19 18.18 -57.31 -1.04 -9.23 16 12 O -0.92 -8.54 18.18 -57.31 -1.04 -9.58 16 13 C -0.58 -3.53 7.18 37.18 0.27 -3.27 16 14 C 0.10 1.01 6.24 -3.71 -0.02 0.99 16 15 C -0.13 -1.70 4.91 -26.61 -0.13 -1.83 16 16 C -0.09 -1.26 1.96 -90.58 -0.18 -1.44 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 18 C 0.16 2.97 5.19 -4.04 -0.02 2.94 16 19 N -0.73 -17.56 5.32 -59.91 -0.32 -17.88 16 20 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 24 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.06 0.82 6.58 -51.93 -0.34 0.47 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 31 H 0.09 1.07 7.01 -51.93 -0.36 0.71 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.14 0.81 7.28 -51.93 -0.38 0.43 16 34 H 0.15 0.72 8.11 -51.93 -0.42 0.29 16 35 H 0.14 0.47 7.91 -51.93 -0.41 0.06 16 36 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.15 1.02 7.58 -51.93 -0.39 0.63 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.63 5.43 -51.93 -0.28 0.35 16 40 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 41 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 44 H 0.38 9.52 6.84 -40.82 -0.28 9.24 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -36.83 361.71 -9.46 -46.29 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.74 Total: 4.84 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.33 Total: -9.27 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.01 Total: -51.34 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -2.00 Total: -26.30 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 14.13 SS G_CDS: -0.81 Total: 13.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.83 -9.46 -46.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184457748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.389 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds