Wall clock time and date at job start Tue Mar 31 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49759 * 2 1 4 4 C 1.53191 * 109.49945 * 239.92958 * 2 1 3 5 5 N 1.46927 * 108.77447 * 185.41332 * 4 2 1 6 6 C 1.34780 * 120.62834 * 233.58434 * 5 4 2 7 7 O 1.21274 * 120.00205 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99866 * 180.02562 * 6 5 4 9 9 C 1.53041 * 113.15143 * 280.37888 * 8 6 5 10 10 S 1.81429 * 89.88739 * 211.85114 * 9 8 6 11 11 O 1.42095 * 112.75445 * 280.47203 * 10 9 8 12 12 O 1.42107 * 112.75344 * 136.72838 * 10 9 8 13 13 C 1.53039 * 113.15161 * 180.02562 * 8 6 5 14 14 C 1.46928 * 118.74229 * 53.60932 * 5 4 2 15 15 C 1.53189 * 108.77461 * 306.39163 * 14 5 4 16 16 C 1.53041 * 109.49790 * 120.05906 * 2 1 3 17 17 H 1.08997 * 109.45920 * 61.29882 * 16 2 1 18 18 C 1.52998 * 109.45950 * 301.33770 * 16 2 1 19 19 N 1.46508 * 109.47323 * 174.99874 * 18 16 2 20 20 C 1.36937 * 120.00167 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99837 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99915 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00290 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99949 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.46937 * 90.00102 * 24 22 20 26 26 H 1.48502 * 109.47088 * 209.99928 * 24 22 20 27 27 H 1.48499 * 109.47091 * 329.99652 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00551 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00532 * 1 2 3 31 31 H 1.08998 * 109.58530 * 305.19958 * 4 2 1 32 32 H 1.09002 * 109.58278 * 65.62831 * 4 2 1 33 33 H 1.08997 * 112.49462 * 50.21444 * 8 6 5 34 34 H 1.09001 * 113.14955 * 327.10598 * 9 8 6 35 35 H 1.08997 * 113.15302 * 96.59343 * 9 8 6 36 36 H 1.08994 * 113.14772 * 263.40522 * 13 8 6 37 37 H 1.08996 * 113.14969 * 32.85200 * 13 8 6 38 38 H 1.09002 * 109.57977 * 66.17684 * 14 5 4 39 39 H 1.08990 * 109.58867 * 186.60212 * 14 5 4 40 40 H 1.09000 * 109.49772 * 174.57938 * 15 14 5 41 41 H 1.09002 * 109.49978 * 294.65387 * 15 14 5 42 42 H 1.09003 * 109.47552 * 294.99820 * 18 16 2 43 43 H 1.09001 * 109.47494 * 55.00344 * 18 16 2 44 44 H 0.97004 * 119.99540 * 0.02562 * 19 18 16 45 45 H 0.96991 * 120.00313 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5046 -0.8289 -1.1696 6 6 4.2811 -0.3859 -2.1783 7 8 3.7732 0.1056 -3.1638 8 6 5.7806 -0.5015 -2.0815 9 6 6.4142 0.5942 -1.2212 10 16 7.9004 0.5461 -2.2608 11 8 8.7610 -0.5380 -1.9395 12 8 8.3920 1.8413 -2.5771 13 6 6.5071 0.0492 -3.3108 14 6 4.1054 -1.4266 0.0306 15 6 3.5709 -0.6952 1.2659 16 6 2.0408 -0.7226 1.2486 17 1 1.6967 -1.7568 1.2359 18 6 1.5037 -0.0223 2.4984 19 7 1.8930 -0.7817 3.6892 20 6 1.5224 -0.3433 4.9324 21 1 0.9428 0.5621 5.0350 22 6 1.8909 -1.0631 6.0606 23 7 1.5343 -0.6420 7.2555 24 14 2.8930 -2.6297 5.8830 25 1 4.3400 -2.2991 5.9258 26 1 2.5639 -3.5566 6.9955 27 1 2.5715 -3.2786 4.5865 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8900 31 1 1.6053 -1.7213 -1.2983 32 1 1.7638 -0.1574 -2.1389 33 1 6.1046 -1.5050 -1.8056 34 1 5.8827 1.5442 -1.2773 35 1 6.5994 0.2794 -0.1943 36 1 6.7700 -0.7223 -4.0344 37 1 5.9931 0.8937 -3.7697 38 1 3.8376 -2.4818 0.0863 39 1 5.1896 -1.3245 -0.0139 40 1 3.9334 -1.1901 2.1669 41 1 3.9163 0.3385 1.2545 42 1 1.9184 0.9840 2.5576 43 1 0.4166 0.0354 2.4437 44 1 2.4140 -1.5948 3.5970 45 1 1.7921 -1.1448 8.0439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184457749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:10 Heat of formation + Delta-G solvation = -69.180838 kcal Electronic energy + Delta-G solvation = -27130.812299 eV Core-core repulsion = 23276.851478 eV Total energy + Delta-G solvation = -3853.960821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81895 -38.57742 -37.78730 -36.60688 -36.16915 -35.27163 -33.69292 -32.13762 -30.77983 -27.58061 -27.32906 -27.02387 -24.55961 -23.26539 -22.62567 -21.25091 -20.14264 -19.32362 -19.17636 -18.06432 -17.56806 -17.03428 -16.79017 -16.36395 -15.78090 -15.59356 -14.95910 -14.90778 -14.47562 -14.25990 -14.14304 -13.70140 -13.51588 -13.39281 -13.10347 -12.97831 -12.70636 -12.68358 -12.52164 -12.35449 -12.16236 -12.07949 -11.93996 -11.83222 -11.43123 -11.39627 -11.06905 -10.95386 -10.85086 -10.59569 -10.51866 -10.21921 -10.16088 -9.96372 -9.63220 -8.94885 -8.83108 -7.27298 -5.81517 -3.17129 -0.35795 1.45728 2.23431 2.64103 3.18265 3.30771 3.32122 3.39989 3.54629 3.61970 3.99969 4.29018 4.36062 4.53366 4.59326 4.67322 4.69637 4.80081 4.86477 4.87496 5.09647 5.18321 5.26752 5.30576 5.38794 5.47924 5.52416 5.60543 5.62321 5.68075 5.71097 5.81762 6.03421 6.07912 6.12217 6.23933 6.29712 6.35224 6.66607 6.73793 7.10187 7.82952 7.94908 8.37539 9.16522 9.88652 10.08388 11.37092 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003224 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.141125 B = 8682.312429 C =10040.440058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.541 3.459 7 O -0.536 6.536 8 C -0.097 4.097 9 C -0.595 4.595 10 S 2.418 3.582 11 O -0.910 6.910 12 O -0.920 6.920 13 C -0.579 4.579 14 C 0.100 3.900 15 C -0.129 4.129 16 C -0.094 4.094 17 H 0.072 0.928 18 C 0.161 3.839 19 N -0.755 5.755 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.033 0.967 44 H 0.359 0.641 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 -0.876 -22.518 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.006 4.006 5 N -0.335 5.335 6 C 0.326 3.674 7 O -0.413 6.413 8 C -0.120 4.120 9 C -0.723 4.723 10 S 2.598 3.402 11 O -0.907 6.907 12 O -0.917 6.917 13 C -0.708 4.708 14 C -0.022 4.022 15 C -0.167 4.167 16 C -0.113 4.113 17 H 0.091 0.909 18 C 0.034 3.966 19 N -0.401 5.401 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.192 0.808 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.902 -0.281 -22.851 24.905 hybrid contribution -0.544 -1.489 0.290 1.611 sum 9.358 -1.770 -22.560 24.488 Atomic orbital electron populations 1.21842 0.94124 1.02283 1.02332 1.21446 0.96342 0.99978 0.93826 0.90670 1.21764 0.78302 1.01099 0.99387 1.48082 1.07188 1.60153 1.18051 1.19658 0.87494 0.77676 0.82564 1.90694 1.74786 1.44725 1.31144 1.21579 0.95592 1.00410 0.94399 1.31036 1.20996 1.06541 1.13742 1.08239 0.76377 0.75098 0.80464 1.93738 1.62266 1.53990 1.80685 1.93666 1.80093 1.37694 1.80199 1.30877 1.17856 1.12358 1.09713 1.21965 0.98170 0.97668 0.84429 1.21968 0.96325 1.01525 0.96907 1.21403 0.94553 1.00338 0.94982 0.90948 1.20733 0.97274 0.94094 0.84518 1.42728 1.66308 1.28476 1.02603 1.19057 1.28634 1.07848 0.81875 0.89293 1.24678 1.00728 0.98650 0.95113 1.69694 1.50829 1.40635 0.97065 0.86563 0.80593 0.84492 0.76948 1.21052 1.21705 1.20393 0.92477 0.92836 0.91094 0.91300 0.89001 0.84685 0.83138 0.84563 0.85234 0.82719 0.90835 0.89761 0.89813 0.91135 0.95685 0.94953 0.80765 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.82 37.16 0.33 -1.26 16 2 C -0.10 -1.08 2.41 -90.50 -0.22 -1.30 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.12 1.22 5.72 -3.71 -0.02 1.20 16 5 N -0.60 -6.09 2.97 -172.77 -0.51 -6.60 16 6 C 0.54 5.66 7.20 -10.98 -0.08 5.59 16 7 O -0.54 -7.33 15.36 5.56 0.09 -7.25 16 8 C -0.10 -0.66 2.46 -91.73 -0.23 -0.89 16 9 C -0.60 -3.25 7.04 37.18 0.26 -2.99 16 10 S 2.42 13.82 7.55 -107.50 -0.81 13.01 16 11 O -0.91 -7.81 18.18 -57.30 -1.04 -8.85 16 12 O -0.92 -8.64 18.18 -57.30 -1.04 -9.69 16 13 C -0.58 -3.26 7.18 37.18 0.27 -2.99 16 14 C 0.10 0.91 6.28 -3.71 -0.02 0.88 16 15 C -0.13 -1.53 5.25 -26.61 -0.14 -1.67 16 16 C -0.09 -1.24 1.73 -90.58 -0.16 -1.40 16 17 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 18 C 0.16 2.85 5.41 -4.04 -0.02 2.83 16 19 N -0.76 -16.89 5.12 -59.91 -0.31 -17.20 16 20 C -0.24 -6.72 10.47 -15.06 -0.16 -6.88 16 21 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 23 N -0.93 -28.90 13.97 55.49 0.78 -28.13 16 24 Si 0.88 21.29 27.74 -169.99 -4.71 16.58 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.84 6.30 -51.93 -0.33 0.52 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.04 7.01 -51.93 -0.36 0.67 16 33 H 0.14 0.63 7.54 -51.93 -0.39 0.24 16 34 H 0.15 0.83 8.11 -51.93 -0.42 0.40 16 35 H 0.14 0.54 7.55 -51.93 -0.39 0.15 16 36 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.15 0.99 7.57 -51.93 -0.39 0.59 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.56 5.09 -51.93 -0.26 0.30 16 40 H 0.08 1.11 7.15 -51.93 -0.37 0.73 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.03 0.59 6.14 -51.93 -0.32 0.27 16 44 H 0.36 7.74 4.70 -40.82 -0.19 7.54 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -37.99 362.07 -9.23 -47.22 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.83 Total: 4.29 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.28 Total: -8.84 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.05 Total: -51.93 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -2.00 Total: -25.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.58 kcal Atomic # 16 Polarization: 13.82 SS G_CDS: -0.81 Total: 13.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.99 -9.23 -47.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184457749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.964 kcal (2) G-P(sol) polarization free energy of solvation -37.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds