Wall clock time and date at job start Tue Mar 31 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.52279 * 2 1 4 4 C 1.53191 * 109.50443 * 120.08464 * 2 1 3 5 5 N 1.46924 * 108.77817 * 174.58846 * 4 2 1 6 6 C 1.34775 * 120.63263 * 126.39226 * 5 4 2 7 7 O 1.21281 * 119.99736 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99881 * 180.02562 * 6 5 4 9 9 C 1.53053 * 113.14870 * 280.37042 * 8 6 5 10 10 S 1.81427 * 89.88799 * 211.85490 * 9 8 6 11 11 O 1.42101 * 112.75281 * 280.47377 * 10 9 8 12 12 O 1.42099 * 112.83530 * 136.71592 * 10 9 8 13 13 C 1.53041 * 113.15214 * 180.02562 * 8 6 5 14 14 C 1.46929 * 118.73409 * 306.38734 * 5 4 2 15 15 C 1.53196 * 108.77486 * 53.61317 * 14 5 4 16 16 C 1.53035 * 109.30995 * 305.36045 * 15 14 5 17 17 H 1.09003 * 109.46450 * 301.35739 * 16 15 14 18 18 C 1.53004 * 109.45754 * 181.38857 * 16 15 14 19 19 N 1.46497 * 109.47375 * 65.00047 * 18 16 15 20 20 C 1.36937 * 120.00024 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99911 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99980 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00014 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00235 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47055 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47686 * 119.99329 * 24 22 20 27 27 H 1.48503 * 109.46966 * 240.00036 * 24 22 20 28 28 H 1.09003 * 109.47178 * 180.08544 * 1 2 3 29 29 H 1.09004 * 109.46673 * 300.07487 * 1 2 3 30 30 H 1.08992 * 109.48072 * 60.07668 * 1 2 3 31 31 H 1.08999 * 109.58565 * 294.37491 * 4 2 1 32 32 H 1.08999 * 109.58540 * 54.79657 * 4 2 1 33 33 H 1.08994 * 112.49672 * 50.20978 * 8 6 5 34 34 H 1.09000 * 113.14884 * 327.11300 * 9 8 6 35 35 H 1.08995 * 113.14779 * 96.59389 * 9 8 6 36 36 H 1.08999 * 113.14479 * 263.40315 * 13 8 6 37 37 H 1.09000 * 113.14889 * 32.83898 * 13 8 6 38 38 H 1.08998 * 109.59209 * 293.82131 * 14 5 4 39 39 H 1.09003 * 109.58217 * 173.39412 * 14 5 4 40 40 H 1.09001 * 109.49651 * 65.31212 * 15 14 5 41 41 H 1.08996 * 109.49316 * 185.37450 * 15 14 5 42 42 H 1.09001 * 109.46888 * 185.00003 * 18 16 15 43 43 H 1.09004 * 109.47243 * 304.99681 * 18 16 15 44 44 H 0.97005 * 119.99803 * 359.97438 * 19 18 16 45 45 H 0.96997 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8291 1.1694 6 6 4.2813 -0.3860 2.1779 7 8 3.7733 0.1057 3.1634 8 6 5.7807 -0.5005 2.0805 9 6 6.2995 -1.9031 2.4060 10 16 7.8211 -1.1801 3.0796 11 8 8.7485 -0.8107 2.0683 12 8 8.2267 -1.7861 4.2992 13 6 6.5073 0.0491 3.3102 14 6 4.1053 -1.4266 -0.0311 15 6 3.5707 -0.6949 -1.2662 16 6 2.0407 -0.7230 -1.2484 17 1 1.6966 -1.7572 -1.2352 18 6 1.5035 -0.0231 -2.4985 19 7 1.8914 -0.7838 -3.6888 20 6 1.5205 -0.3459 -4.9322 21 1 0.9416 0.5600 -5.0351 22 6 1.8876 -1.0670 -6.0601 23 7 2.5927 -2.1713 -5.9345 24 14 1.3810 -0.4701 -7.7560 25 1 0.5994 0.7858 -7.6258 26 1 2.5939 -0.2161 -8.5743 27 1 0.5463 -1.5057 -8.4164 28 1 -0.3634 -1.0277 0.0015 29 1 -0.3633 0.5150 0.8894 30 1 -0.3635 0.5126 -0.8905 31 1 1.7639 -0.1581 2.1388 32 1 1.6054 -1.7216 1.2979 33 1 6.1689 -0.1065 1.1413 34 1 5.7006 -2.4178 3.1574 35 1 6.4710 -2.5131 1.5192 36 1 6.8529 1.0748 3.1808 37 1 5.9481 -0.0888 4.2355 38 1 3.8376 -2.4817 -0.0871 39 1 5.1896 -1.3244 0.0134 40 1 3.9157 0.3390 -1.2542 41 1 3.9338 -1.1891 -2.1673 42 1 0.4165 0.0356 -2.4431 43 1 1.9191 0.9828 -2.5586 44 1 2.4117 -1.5973 -3.5963 45 1 2.8495 -2.6750 -6.7227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184457751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:34 Heat of formation + Delta-G solvation = -73.585220 kcal Electronic energy + Delta-G solvation = -26881.839911 eV Core-core repulsion = 23027.688101 eV Total energy + Delta-G solvation = -3854.151809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72201 -38.47093 -37.75033 -36.56944 -36.10636 -35.09873 -33.59703 -32.04503 -30.37958 -27.47950 -27.03138 -26.94718 -24.48755 -23.39174 -22.52931 -21.33271 -19.93187 -19.26228 -19.21101 -17.90961 -17.12941 -16.95443 -16.73376 -16.30643 -15.69281 -15.64376 -14.93118 -14.60305 -14.51059 -14.05995 -13.94663 -13.72196 -13.60895 -13.26424 -13.05955 -12.68248 -12.66289 -12.63664 -12.55798 -12.28160 -12.05473 -11.96312 -11.87908 -11.69581 -11.38832 -11.04623 -10.94332 -10.87160 -10.81589 -10.45115 -10.36355 -10.24725 -10.01562 -9.88230 -9.68302 -8.90904 -8.73374 -6.94749 -5.81081 -3.09008 -0.32564 1.48903 2.30772 2.73312 3.21841 3.40238 3.46416 3.48202 3.58647 3.66571 4.06570 4.36186 4.41725 4.54818 4.68854 4.74803 4.85608 4.88981 4.92193 5.02599 5.19974 5.24931 5.37698 5.42768 5.43966 5.53395 5.61891 5.71136 5.78325 5.83585 5.90589 6.00603 6.15258 6.21575 6.25796 6.36395 6.43176 6.55711 6.77690 6.87191 7.19803 7.67128 7.91023 8.38402 9.49747 10.07499 10.41986 11.41948 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.002723 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.341250 B =10278.527665 C =11618.832275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.540 3.460 7 O -0.539 6.539 8 C -0.097 4.097 9 C -0.595 4.595 10 S 2.418 3.582 11 O -0.908 6.908 12 O -0.922 6.922 13 C -0.579 4.579 14 C 0.102 3.898 15 C -0.128 4.128 16 C -0.089 4.089 17 H 0.072 0.928 18 C 0.156 3.844 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 1.161 19.878 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.334 5.334 6 C 0.326 3.674 7 O -0.416 6.416 8 C -0.120 4.120 9 C -0.722 4.722 10 S 2.598 3.402 11 O -0.905 6.905 12 O -0.919 6.919 13 C -0.708 4.708 14 C -0.021 4.021 15 C -0.166 4.166 16 C -0.108 4.108 17 H 0.091 0.909 18 C 0.029 3.971 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.042 0.958 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.514 1.301 20.458 21.833 hybrid contribution -1.299 0.210 -1.446 1.955 sum 6.216 1.510 19.012 20.059 Atomic orbital electron populations 1.21830 0.94293 1.02230 1.02121 1.21464 0.96212 0.99928 0.94100 0.90868 1.21752 0.78375 1.01054 0.99337 1.48102 1.07176 1.60005 1.18073 1.19639 0.87501 0.77625 0.82665 1.90689 1.74814 1.44903 1.31217 1.21592 0.96085 0.94465 0.99883 1.31011 1.22308 1.04771 1.14154 1.08249 0.76417 0.79850 0.75703 1.93747 1.58389 1.80465 1.57911 1.93657 1.82586 1.72874 1.42749 1.30877 1.16802 1.17446 1.05686 1.21980 0.98011 0.97813 0.84271 1.21964 0.96214 1.01221 0.97219 1.21343 0.94632 1.00241 0.94588 0.90915 1.20754 0.96709 0.94047 0.85601 1.42381 1.65457 1.28931 1.00868 1.19265 1.27622 1.06158 0.83816 0.91244 1.24721 1.00949 0.97519 0.97825 1.69656 1.42901 1.17263 1.28469 0.86132 0.77673 0.77760 0.84721 1.20608 1.21871 1.21890 0.92478 0.92988 0.91236 0.89149 0.91324 0.84473 0.83323 0.84639 0.85168 0.82778 0.90721 0.89896 0.91634 0.89042 0.95781 0.96575 0.78333 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.82 37.15 0.33 -1.35 16 2 C -0.10 -1.18 2.41 -90.50 -0.22 -1.40 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.32 5.72 -3.71 -0.02 1.30 16 5 N -0.60 -6.59 2.97 -172.77 -0.51 -7.10 16 6 C 0.54 6.05 7.20 -10.99 -0.08 5.97 16 7 O -0.54 -7.71 15.36 5.56 0.09 -7.62 16 8 C -0.10 -0.73 2.48 -91.72 -0.23 -0.96 16 9 C -0.59 -3.13 7.15 37.18 0.27 -2.87 16 10 S 2.42 14.16 7.55 -107.50 -0.81 13.34 16 11 O -0.91 -8.19 18.18 -57.31 -1.04 -9.23 16 12 O -0.92 -8.53 18.18 -57.31 -1.04 -9.58 16 13 C -0.58 -3.57 7.18 37.18 0.27 -3.30 16 14 C 0.10 1.03 6.25 -3.71 -0.02 1.00 16 15 C -0.13 -1.69 5.25 -26.61 -0.14 -1.83 16 16 C -0.09 -1.28 1.73 -90.58 -0.16 -1.44 16 17 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 18 C 0.16 2.94 5.41 -4.04 -0.02 2.91 16 19 N -0.73 -17.55 5.32 -59.91 -0.32 -17.87 16 20 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 24 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 31 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.14 0.82 7.27 -51.93 -0.38 0.44 16 34 H 0.15 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.14 0.47 7.92 -51.93 -0.41 0.06 16 36 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.15 1.03 7.57 -51.93 -0.39 0.64 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.64 5.43 -51.93 -0.28 0.36 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.41 7.15 -51.93 -0.37 1.03 16 42 H 0.02 0.46 6.14 -51.93 -0.32 0.15 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 9.52 6.85 -40.82 -0.28 9.24 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -36.89 365.73 -9.60 -46.49 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.90 Total: 4.77 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.27 Total: -9.06 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.11 Total: -51.63 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -2.00 Total: -26.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 14.16 SS G_CDS: -0.81 Total: 13.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.89 -9.60 -46.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184457751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.092 kcal (2) G-P(sol) polarization free energy of solvation -36.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds