Wall clock time and date at job start Tue Mar 31 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99767 * 2 1 4 4 H 1.48495 * 109.47421 * 240.00054 * 3 2 1 5 5 H 1.48507 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47032 * 120.00210 * 3 2 1 7 7 C 1.38795 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99735 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99595 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46920 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99908 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99962 * 180.02562 * 13 11 10 15 15 H 1.09001 * 110.36852 * 35.72430 * 14 13 11 16 16 C 1.54381 * 110.32316 * 273.54283 * 14 13 11 17 17 N 1.48561 * 104.59608 * 217.25352 * 16 14 13 18 18 C 1.46897 * 110.99875 * 159.03863 * 17 16 14 19 19 C 1.53004 * 109.46821 * 169.99861 * 18 17 16 20 20 H 1.09002 * 110.45558 * 54.30120 * 19 18 17 21 21 C 1.54514 * 110.50999 * 176.90610 * 19 18 17 22 22 C 1.54478 * 104.06049 * 118.78127 * 21 19 18 23 23 O 1.44425 * 104.80498 * 23.98325 * 22 21 19 24 24 C 1.44786 * 105.29206 * 319.44645 * 23 22 21 25 25 C 1.48563 * 104.22018 * 39.48401 * 17 16 14 26 26 C 1.54264 * 110.32327 * 157.90818 * 14 13 11 27 27 H 1.08995 * 110.32482 * 237.79251 * 26 14 13 28 28 O 1.42897 * 110.32121 * 359.89695 * 26 14 13 29 29 H 0.96994 * 120.00578 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47599 * 60.00356 * 10 9 7 31 31 H 1.08997 * 109.47634 * 299.99572 * 10 9 7 32 32 H 0.96997 * 120.00018 * 359.97438 * 13 11 10 33 33 H 1.09003 * 110.40925 * 98.47495 * 16 14 13 34 34 H 1.09003 * 110.51126 * 336.08023 * 16 14 13 35 35 H 1.09003 * 109.46990 * 50.00440 * 18 17 16 36 36 H 1.08993 * 109.47297 * 289.99798 * 18 17 16 37 37 H 1.09004 * 110.50878 * 237.43071 * 21 19 18 38 38 H 1.09004 * 110.51070 * 0.13788 * 21 19 18 39 39 H 1.09005 * 110.36846 * 142.80856 * 22 21 19 40 40 H 1.08996 * 110.37429 * 265.02977 * 22 21 19 41 41 H 1.09001 * 110.42756 * 281.78155 * 24 23 22 42 42 H 1.09000 * 110.48740 * 159.32443 * 24 23 22 43 43 H 1.08994 * 110.41031 * 79.29837 * 25 17 16 44 44 H 1.09005 * 110.40901 * 201.73833 * 25 17 16 45 45 H 0.96706 * 113.99777 * 180.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9877 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0008 14 6 2.3307 -7.7150 -0.0019 15 1 1.4214 -7.7791 -0.5996 16 6 2.0574 -8.1865 1.4425 17 7 2.4517 -9.6188 1.4497 18 6 2.7251 -10.0826 2.8165 19 6 2.8821 -11.6046 2.8167 20 1 3.6392 -11.9095 2.0942 21 6 3.2472 -12.1110 4.2301 22 6 2.0752 -13.0433 4.6091 23 8 1.5180 -13.4678 3.3461 24 6 1.5317 -12.2880 2.5068 25 6 3.6808 -9.6632 0.6165 26 6 3.3987 -8.6865 -0.5453 27 1 3.0137 -9.2275 -1.4097 28 8 4.5861 -7.9731 -0.8960 29 1 -0.4851 0.8399 0.0004 30 1 3.1246 -3.7313 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1834 -0.0004 33 1 0.9993 -8.0822 1.6826 34 1 2.6645 -7.6215 2.1500 35 1 1.8970 -9.8027 3.4676 36 1 3.6442 -9.6225 3.1792 37 1 4.1849 -12.6663 4.2063 38 1 3.3135 -11.2773 4.9292 39 1 2.4407 -13.9031 5.1706 40 1 1.3308 -12.4997 5.1908 41 1 0.7040 -11.6276 2.7654 42 1 1.4808 -12.5677 1.4546 43 1 4.5432 -9.3290 1.1932 44 1 3.8450 -10.6709 0.2347 45 1 5.2931 -8.5333 -1.2445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219217849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:39 Heat of formation + Delta-G solvation = -120.993444 kcal Electronic energy + Delta-G solvation = -25870.407090 eV Core-core repulsion = 22014.199506 eV Total energy + Delta-G solvation = -3856.207584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.44115 -39.58488 -38.38299 -36.44375 -34.34821 -33.01461 -32.41427 -30.60484 -29.50314 -28.84046 -27.65529 -25.49332 -25.12872 -23.23593 -21.82652 -21.30889 -20.51740 -20.16358 -17.98606 -17.72304 -17.06508 -16.56356 -16.16743 -15.89000 -15.70863 -15.58614 -14.98177 -14.94243 -14.79264 -14.46711 -14.15305 -13.74164 -13.67182 -13.62823 -13.08359 -13.01985 -12.64526 -12.46818 -12.07415 -11.99153 -11.87283 -11.71985 -11.44534 -11.39074 -11.14530 -11.02985 -11.02793 -10.88950 -10.75201 -10.39460 -10.11840 -9.80803 -9.40381 -9.05247 -8.98717 -8.80864 -8.22263 -6.48206 -6.20169 -3.90564 2.92411 3.09532 3.24042 3.24301 3.29279 3.44563 3.63240 3.80204 3.94094 4.17452 4.21556 4.22052 4.29530 4.43308 4.56173 4.69256 4.76526 4.89399 4.96742 5.03513 5.07453 5.14741 5.17475 5.23016 5.26406 5.31340 5.32496 5.38140 5.45555 5.53044 5.60198 5.64203 5.73063 5.77965 5.89971 5.93529 6.17744 6.30922 6.43666 6.54507 6.64684 7.25584 7.60713 7.82414 8.36513 8.65680 9.24926 10.87190 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023495 B = 0.002075 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.476776 B =13487.542824 C =13963.516507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.720 5.720 14 C 0.154 3.846 15 H 0.105 0.895 16 C 0.021 3.979 17 N -0.504 5.504 18 C 0.053 3.947 19 C -0.114 4.114 20 H 0.082 0.918 21 C -0.152 4.152 22 C 0.045 3.955 23 O -0.382 6.382 24 C 0.060 3.940 25 C -0.001 4.001 26 C 0.094 3.906 27 H 0.078 0.922 28 O -0.559 6.559 29 H 0.269 0.731 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.408 0.592 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 -26.018 5.045 28.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.376 5.376 14 C 0.047 3.953 15 H 0.123 0.877 16 C -0.108 4.108 17 N -0.229 5.229 18 C -0.076 4.076 19 C -0.134 4.134 20 H 0.100 0.900 21 C -0.191 4.191 22 C -0.032 4.032 23 O -0.301 6.301 24 C -0.017 4.017 25 C -0.129 4.129 26 C 0.034 3.966 27 H 0.096 0.904 28 O -0.364 6.364 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.244 0.756 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.113 -26.279 4.976 27.950 hybrid contribution 3.564 1.567 0.302 3.905 sum 11.677 -24.712 5.279 27.837 Atomic orbital electron populations 1.70007 1.05931 1.27543 1.46836 1.24991 0.95036 0.99010 0.94573 0.86224 0.79228 0.81253 0.78787 1.19940 1.20821 1.19973 1.22834 0.94884 0.91697 1.58971 0.90995 1.85369 1.04952 0.96266 1.96721 1.23513 1.06496 0.95311 1.04919 1.20365 0.86530 0.86366 0.74926 1.90699 1.15340 1.85552 1.47794 1.45804 1.10671 1.04105 1.77052 1.21587 0.96618 0.81476 0.95636 0.87710 1.23643 1.02757 0.87357 0.97000 1.65338 1.28151 1.18512 1.10898 1.22373 1.00839 0.94173 0.90188 1.22488 0.98883 0.94877 0.97106 0.89963 1.22997 0.99621 0.99929 0.96523 1.23378 0.94227 0.98287 0.87335 1.89184 1.84125 1.32567 1.24206 1.23460 0.95899 0.86389 0.95906 1.23926 0.92881 1.00424 0.95715 1.22804 0.85883 0.91795 0.96138 0.90401 1.86397 1.25491 1.38385 1.86120 0.92145 0.89352 0.89193 0.75601 0.88698 0.92789 0.90112 0.93870 0.90581 0.90333 0.89282 0.92244 0.91693 0.88819 0.92518 0.89626 0.76897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.07 7.84 -10.98 -0.09 9.98 16 12 O -0.52 -11.72 15.56 5.55 0.09 -11.63 16 13 N -0.72 -10.15 4.90 -52.46 -0.26 -10.41 16 14 C 0.15 1.84 3.36 -66.54 -0.22 1.62 16 15 H 0.10 1.44 7.65 -51.93 -0.40 1.04 16 16 C 0.02 0.24 6.16 -2.18 -0.01 0.22 16 17 N -0.50 -4.32 5.18 -229.97 -1.19 -5.51 16 18 C 0.05 0.39 3.97 -3.82 -0.02 0.38 16 19 C -0.11 -0.77 3.17 -89.05 -0.28 -1.05 16 20 H 0.08 0.54 7.33 -51.93 -0.38 0.16 16 21 C -0.15 -0.88 6.74 -25.16 -0.17 -1.05 16 22 C 0.04 0.30 7.63 37.93 0.29 0.59 16 23 O -0.38 -3.70 11.66 -35.23 -0.41 -4.11 16 24 C 0.06 0.49 7.06 37.93 0.27 0.75 16 25 C 0.00 -0.01 5.67 -2.18 -0.01 -0.02 16 26 C 0.09 0.79 4.42 -25.35 -0.11 0.67 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 O -0.56 -4.41 11.50 -35.23 -0.41 -4.82 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 32 H 0.41 5.12 7.17 -40.82 -0.29 4.82 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 35 H 0.08 0.63 7.96 -51.93 -0.41 0.21 16 36 H 0.04 0.32 7.77 -51.93 -0.40 -0.09 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.40 7.73 -51.93 -0.40 0.00 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.55 7.78 -51.93 -0.40 0.14 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 44 H 0.09 0.49 7.74 -51.93 -0.40 0.08 16 45 H 0.38 1.32 9.12 45.56 0.42 1.74 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -35.15 377.76 -9.34 -44.49 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.42 Total: 3.09 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 0.06 Total: -3.89 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.72 Total: -41.48 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.73 Total: -20.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.15 -9.34 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219217849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.502 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds