Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47490 * 270.00343 * 3 2 1 5 5 H 1.48504 * 109.47132 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47494 * 149.99856 * 3 2 1 7 7 C 1.37883 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99575 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00226 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99932 * 169.99998 * 10 9 7 12 12 C 1.53242 * 109.34071 * 187.25288 * 11 10 9 13 13 N 1.47079 * 108.51982 * 306.17388 * 12 11 10 14 14 C 1.34784 * 120.87728 * 231.18188 * 13 12 11 15 15 O 1.21277 * 119.99941 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99656 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47044 * 180.02562 * 16 14 13 18 18 H 1.08994 * 109.63806 * 54.57339 * 17 16 14 19 19 C 1.53876 * 109.64533 * 175.00025 * 17 16 14 20 20 C 1.55048 * 106.62143 * 167.03451 * 19 17 16 21 21 S 1.83290 * 102.56847 * 317.56742 * 20 19 17 22 22 O 1.42096 * 109.35307 * 136.61207 * 21 20 19 23 23 O 1.42099 * 109.35441 * 269.81409 * 21 20 19 24 24 C 1.54165 * 109.64701 * 294.27957 * 17 16 14 25 25 C 1.47081 * 118.23957 * 51.45642 * 13 12 11 26 26 C 1.46902 * 110.99932 * 294.30170 * 10 9 7 27 27 H 0.96997 * 120.00323 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46680 * 59.99764 * 9 7 2 29 29 H 1.09004 * 109.47350 * 300.00239 * 9 7 2 30 30 H 1.09000 * 109.49754 * 67.29429 * 11 10 9 31 31 H 1.09001 * 109.49769 * 307.21333 * 11 10 9 32 32 H 1.08996 * 109.63263 * 186.45892 * 12 11 10 33 33 H 1.09004 * 109.78501 * 65.97274 * 12 11 10 34 34 H 1.09006 * 109.46842 * 60.00676 * 16 14 13 35 35 H 1.08997 * 109.47660 * 300.00391 * 16 14 13 36 36 H 1.09005 * 110.02571 * 47.74558 * 19 17 16 37 37 H 1.08993 * 110.03245 * 286.32427 * 19 17 16 38 38 H 1.09001 * 110.79040 * 199.29943 * 20 19 17 39 39 H 1.08994 * 110.95334 * 75.91033 * 20 19 17 40 40 H 1.08999 * 110.31725 * 93.33439 * 24 17 16 41 41 H 1.09006 * 110.31591 * 331.13988 * 24 17 16 42 42 H 1.08998 * 109.62703 * 68.25036 * 25 13 12 43 43 H 1.09002 * 109.62785 * 188.83162 * 25 13 12 44 44 H 1.08993 * 109.49362 * 292.70769 * 26 10 9 45 45 H 1.08998 * 109.49041 * 52.75925 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4501 -2.6251 -0.2377 12 6 5.8899 -4.0828 -0.4106 13 7 5.4258 -4.8521 0.7539 14 6 6.2757 -5.6322 1.4509 15 8 7.4403 -5.7061 1.1207 16 6 5.7790 -6.4115 2.6413 17 6 6.9358 -7.2081 3.2481 18 1 7.7627 -6.5361 3.4775 19 6 6.4639 -7.9061 4.5357 20 6 7.5582 -8.9401 4.9062 21 16 7.9739 -9.6802 3.2818 22 8 9.3847 -9.8071 3.1693 23 8 7.1392 -10.8066 3.0500 24 6 7.4066 -8.2822 2.2475 25 6 4.0084 -4.7525 1.1338 26 6 3.6441 -3.2638 1.2496 27 1 -0.4850 0.8400 -0.0004 28 1 3.8744 -0.6808 0.8905 29 1 3.8753 -0.6797 -0.8894 30 1 5.9723 -2.1861 0.6124 31 1 5.6886 -2.0636 -1.1410 32 1 6.9770 -4.1324 -0.4727 33 1 5.4521 -4.4949 -1.3198 34 1 4.9924 -7.0965 2.3245 35 1 5.3822 -5.7225 3.3869 36 1 5.5153 -8.4133 4.3593 37 1 6.3537 -7.1758 5.3374 38 1 7.1627 -9.6953 5.5856 39 1 8.4281 -8.4482 5.3412 40 1 8.2290 -7.9010 1.6422 41 1 6.5793 -8.5943 1.6100 42 1 3.3906 -5.2255 0.3705 43 1 3.8511 -5.2450 2.0934 44 1 4.1913 -2.8159 2.0790 45 1 2.5728 -3.1651 1.4251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363623245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = -95.225855 kcal Electronic energy + Delta-G solvation = -26620.237607 eV Core-core repulsion = 22765.147389 eV Total energy + Delta-G solvation = -3855.090218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -40.35297 -38.14556 -37.33608 -36.88504 -36.25822 -34.59915 -32.53603 -31.72592 -30.75641 -29.14215 -28.26833 -25.89389 -24.77233 -23.43412 -21.97548 -21.19576 -20.44125 -19.19670 -18.71089 -17.48621 -17.17301 -16.90755 -16.70838 -16.02595 -15.87652 -15.53766 -14.80856 -14.66462 -14.64520 -14.49250 -14.25113 -14.00863 -13.69551 -13.44651 -13.17282 -12.72868 -12.51897 -12.47789 -12.44504 -12.39497 -12.29829 -12.19192 -11.82373 -11.63166 -11.35854 -11.26746 -11.19406 -10.98723 -10.88863 -10.66791 -10.57365 -10.42053 -9.99326 -9.77717 -9.42861 -8.68076 -8.62960 -7.56941 -6.16364 -4.14801 -0.27120 2.20318 2.54305 2.90996 3.20428 3.26013 3.28486 3.29627 3.64799 3.93081 4.06142 4.14045 4.31997 4.39290 4.43954 4.51785 4.62174 4.85748 5.00443 5.03623 5.09505 5.14929 5.20241 5.22292 5.26037 5.28911 5.35940 5.46977 5.58996 5.63209 5.65244 5.69476 5.87141 6.06942 6.24989 6.31325 6.48480 6.70931 6.82613 7.37633 7.44431 7.71725 7.85589 8.09479 8.51377 8.90144 9.44968 10.96350 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.031547 B = 0.002269 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.339138 B =12336.058495 C =12661.209456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.527 5.527 11 C 0.039 3.961 12 C 0.118 3.882 13 N -0.608 5.608 14 C 0.512 3.488 15 O -0.549 6.549 16 C -0.134 4.134 17 C -0.067 4.067 18 H 0.102 0.898 19 C -0.118 4.118 20 C -0.589 4.589 21 S 2.382 3.618 22 O -0.942 6.942 23 O -0.941 6.941 24 C -0.579 4.579 25 C 0.107 3.893 26 C 0.049 3.951 27 H 0.265 0.735 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.026 0.974 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.821 -15.518 9.675 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.252 5.252 11 C -0.091 4.091 12 C -0.005 4.005 13 N -0.341 5.341 14 C 0.301 3.699 15 O -0.427 6.427 16 C -0.174 4.174 17 C -0.087 4.087 18 H 0.120 0.880 19 C -0.157 4.157 20 C -0.718 4.718 21 S 2.566 3.434 22 O -0.939 6.939 23 O -0.938 6.938 24 C -0.709 4.709 25 C -0.016 4.016 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.006 0.994 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.153 0.847 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.044 0.956 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.456 -16.568 8.868 23.113 hybrid contribution 0.236 2.329 0.779 2.467 sum 13.692 -14.239 9.646 21.984 Atomic orbital electron populations 1.69879 1.06116 1.26997 1.50640 1.24892 0.94736 0.98883 0.94697 0.86874 0.80240 0.84021 0.78682 1.20073 1.21141 1.19358 1.20990 0.88540 0.94741 1.50873 0.90049 1.20177 0.97195 0.83710 0.95232 1.61888 1.10118 1.19331 1.33823 1.22452 0.90313 0.95395 1.00916 1.21732 1.00227 0.90813 0.87687 1.48269 1.10244 1.45226 1.30397 1.20507 0.85791 0.79537 0.84100 1.90652 1.17337 1.65119 1.69622 1.21762 0.98922 0.99860 0.96889 1.21335 0.99300 0.96299 0.91731 0.87995 1.22314 0.97571 0.98037 0.97757 1.30602 1.08910 1.11065 1.21236 1.09250 0.75717 0.78082 0.80317 1.93613 1.28724 1.86390 1.85146 1.93619 1.69335 1.46941 1.83900 1.30594 1.13469 1.15124 1.11696 1.22150 0.80356 0.98263 1.00782 1.22453 1.03088 0.91611 0.90846 0.92539 0.99364 0.95602 0.95487 0.90029 0.89307 0.90798 0.88067 0.87859 0.89101 0.88129 0.84501 0.84453 0.83167 0.84731 0.90215 0.89918 0.95616 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.96 55.43 0.77 -25.50 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.51 -13.62 8.96 -34.44 -0.31 -13.93 16 8 H 0.08 2.33 7.37 -52.48 -0.39 1.94 16 9 C 0.16 3.68 3.79 -4.98 -0.02 3.66 16 10 N -0.53 -9.92 4.62 -235.47 -1.09 -11.01 16 11 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 12 C 0.12 1.62 6.60 -3.60 -0.02 1.59 16 13 N -0.61 -7.71 3.00 -172.18 -0.52 -8.22 16 14 C 0.51 6.01 7.47 -10.98 -0.08 5.93 16 15 O -0.55 -7.92 13.98 5.56 0.08 -7.84 16 16 C -0.13 -0.97 3.44 -27.88 -0.10 -1.07 16 17 C -0.07 -0.43 2.24 -89.55 -0.20 -0.63 16 18 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 19 C -0.12 -0.47 5.80 -25.19 -0.15 -0.62 16 20 C -0.59 -2.52 7.31 38.24 0.28 -2.24 16 21 S 2.38 18.22 6.11 -107.50 -0.66 17.56 16 22 O -0.94 -10.98 18.14 -57.71 -1.05 -12.02 16 23 O -0.94 -10.38 18.15 -57.71 -1.05 -11.43 16 24 C -0.58 -4.21 5.83 37.77 0.22 -3.99 16 25 C 0.11 1.29 6.53 -3.36 -0.02 1.27 16 26 C 0.05 0.79 5.47 -3.46 -0.02 0.77 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 29 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.23 7.99 -51.93 -0.41 0.82 16 32 H 0.09 1.21 7.06 -51.93 -0.37 0.84 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.55 7.87 -51.93 -0.41 0.14 16 35 H 0.10 0.59 7.67 -51.93 -0.40 0.19 16 36 H 0.09 0.27 8.11 -51.93 -0.42 -0.16 16 37 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.14 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.15 1.30 7.30 -51.93 -0.38 0.92 16 41 H 0.13 0.87 7.81 -51.93 -0.41 0.46 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 0.71 6.02 -51.93 -0.31 0.39 16 44 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 1.87 6.67 -51.93 -0.35 1.53 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -36.69 362.40 -10.38 -47.07 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.14 Total: -3.15 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.54 Total: -6.82 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.83 Total: -44.74 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -2.02 Total: -31.29 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 18.22 SS G_CDS: -0.66 Total: 17.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.69 -10.38 -47.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363623245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.158 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds