Wall clock time and date at job start Tue Mar 31 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46894 * 110.99840 * 294.30263 * 10 9 7 12 12 C 1.53241 * 109.33738 * 172.74512 * 11 10 9 13 13 N 1.47084 * 108.52025 * 53.83261 * 12 11 10 14 14 C 1.34775 * 120.88142 * 128.83757 * 13 12 11 15 15 O 1.21285 * 119.99832 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 359.97425 * 14 13 12 17 17 C 1.53002 * 109.46860 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.64115 * 305.42324 * 17 16 14 19 19 C 1.53879 * 109.64691 * 185.00111 * 17 16 14 20 20 C 1.55046 * 106.62583 * 192.96349 * 19 17 16 21 21 S 1.83294 * 102.56451 * 42.43373 * 20 19 17 22 22 O 1.42094 * 109.35659 * 90.18557 * 21 20 19 23 23 O 1.42103 * 109.34750 * 223.38811 * 21 20 19 24 24 C 1.54161 * 109.65147 * 65.72227 * 17 16 14 25 25 C 1.47075 * 118.23631 * 308.81089 * 13 12 11 26 26 C 1.46907 * 110.99886 * 169.99909 * 10 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 29 29 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 30 30 H 1.09002 * 109.49592 * 292.70537 * 11 10 9 31 31 H 1.08997 * 109.49306 * 52.78695 * 11 10 9 32 32 H 1.08994 * 109.62922 * 294.12012 * 12 11 10 33 33 H 1.08998 * 109.78677 * 173.63361 * 12 11 10 34 34 H 1.09004 * 109.47333 * 299.99891 * 16 14 13 35 35 H 1.08994 * 109.47074 * 60.00130 * 16 14 13 36 36 H 1.09007 * 110.02743 * 312.25694 * 19 17 16 37 37 H 1.08997 * 110.03052 * 73.62519 * 19 17 16 38 38 H 1.09003 * 110.79126 * 160.69920 * 20 19 17 39 39 H 1.08999 * 110.79022 * 283.97099 * 20 19 17 40 40 H 1.09000 * 110.31942 * 266.66537 * 24 17 16 41 41 H 1.09002 * 110.31256 * 28.85905 * 24 17 16 42 42 H 1.09005 * 109.63142 * 291.48128 * 25 13 12 43 43 H 1.08999 * 109.78948 * 170.99282 * 25 13 12 44 44 H 1.09001 * 109.49027 * 307.21223 * 26 10 9 45 45 H 1.08998 * 109.48893 * 67.29331 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9767 -3.6491 -1.2504 12 6 4.0789 -4.7078 -1.1385 13 7 3.4615 -5.9863 -0.7544 14 6 3.7122 -7.1125 -1.4510 15 8 3.1947 -8.1582 -1.1199 16 6 4.6355 -7.0724 -2.6414 17 6 4.7470 -8.4727 -3.2477 18 1 5.0532 -9.1817 -2.4785 19 6 5.7839 -8.4632 -4.3846 20 6 5.6064 -9.7952 -5.1580 21 16 3.7835 -9.9550 -5.2639 22 8 3.3240 -9.3274 -6.4531 23 8 3.4112 -11.2966 -4.9797 24 6 3.3826 -8.8972 -3.8264 25 6 2.5637 -6.0032 0.4104 26 6 1.5211 -4.8936 0.2376 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 0.8897 29 1 0.6240 -2.5568 -0.8903 30 1 2.3149 -3.8993 -2.0796 31 1 3.4272 -2.6722 -1.4260 32 1 4.8002 -4.4066 -0.3789 33 1 4.5830 -4.8185 -2.0986 34 1 4.2370 -6.3846 -3.3873 35 1 5.6218 -6.7335 -2.3249 36 1 5.6016 -7.6185 -5.0491 37 1 6.7906 -8.4021 -3.9713 38 1 6.0472 -9.7268 -6.1526 39 1 6.0389 -10.6265 -4.6013 40 1 2.8170 -9.4630 -3.0862 41 1 2.8184 -8.0213 -4.1467 42 1 3.1393 -5.8265 1.3190 43 1 2.0629 -6.9691 0.4763 44 1 0.9160 -4.8191 1.1412 45 1 0.8795 -5.1263 -0.6122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363623248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:55 Heat of formation + Delta-G solvation = -99.570985 kcal Electronic energy + Delta-G solvation = -26684.353577 eV Core-core repulsion = 22829.074940 eV Total energy + Delta-G solvation = -3855.278637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.30769 -38.06415 -37.30080 -36.83757 -36.22358 -34.50197 -32.54982 -31.68248 -30.71324 -28.93309 -27.93693 -25.71648 -24.72877 -23.34421 -22.18310 -21.28691 -20.40442 -19.15044 -18.70120 -17.42287 -17.13759 -16.65575 -16.45034 -15.99093 -15.84942 -15.48923 -14.84252 -14.72853 -14.51689 -14.43121 -14.06510 -14.01304 -13.73250 -13.30719 -13.15526 -12.68785 -12.49401 -12.43651 -12.38879 -12.27836 -12.22901 -11.94145 -11.79662 -11.37506 -11.30934 -11.13737 -11.04692 -10.96230 -10.83221 -10.69378 -10.61675 -10.53869 -9.96095 -9.73489 -9.36359 -8.59603 -8.50751 -7.41991 -6.12064 -4.14737 -0.24082 2.23601 2.57996 2.95533 3.26137 3.29123 3.31533 3.33115 3.67582 3.95171 4.08498 4.16764 4.32923 4.41638 4.46618 4.63931 4.68726 4.89570 5.02487 5.07771 5.15048 5.21454 5.22673 5.27594 5.29831 5.30822 5.43216 5.55692 5.64823 5.66004 5.68749 5.79254 5.93954 6.19804 6.35021 6.36727 6.57373 7.14137 7.20125 7.43910 7.66701 7.93780 8.04337 8.13624 8.39642 8.91961 9.50034 10.98678 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.002399 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.276962 B =11670.112465 C =11974.066220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.049 3.951 12 C 0.107 3.893 13 N -0.607 5.607 14 C 0.512 3.488 15 O -0.549 6.549 16 C -0.134 4.134 17 C -0.066 4.066 18 H 0.102 0.898 19 C -0.118 4.118 20 C -0.589 4.589 21 S 2.382 3.618 22 O -0.940 6.940 23 O -0.942 6.942 24 C -0.579 4.579 25 C 0.118 3.882 26 C 0.041 3.959 27 H 0.263 0.737 28 H 0.032 0.968 29 H -0.009 1.009 30 H 0.025 0.975 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.516 -16.658 -7.867 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.080 4.080 12 C -0.016 4.016 13 N -0.340 5.340 14 C 0.300 3.700 15 O -0.427 6.427 16 C -0.174 4.174 17 C -0.086 4.086 18 H 0.120 0.880 19 C -0.157 4.157 20 C -0.718 4.718 21 S 2.567 3.433 22 O -0.937 6.937 23 O -0.939 6.939 24 C -0.710 4.710 25 C -0.005 4.005 26 C -0.089 4.089 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.009 0.991 30 H 0.043 0.957 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.169 0.831 41 H 0.153 0.847 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.802 -17.515 -7.950 23.106 hybrid contribution 0.231 1.484 -0.051 1.503 sum 13.033 -16.031 -8.001 22.155 Atomic orbital electron populations 1.69945 1.06121 1.27065 1.50473 1.25003 0.94868 0.99392 0.95285 0.86544 0.79434 0.82678 0.78640 1.21335 1.20127 1.20244 1.21081 0.93387 0.89854 1.50751 0.91860 1.19723 0.89969 0.87114 0.96250 1.62088 1.28151 1.02750 1.33101 1.22333 0.95135 0.99062 0.91491 1.22052 0.96343 0.82661 1.00511 1.48251 1.46827 1.08591 1.30334 1.20496 0.82147 0.83334 0.84017 1.90655 1.52470 1.30113 1.69507 1.21759 1.00966 0.97708 0.96982 1.21331 0.90887 0.98299 0.98091 0.87975 1.22315 1.01707 0.95055 0.96598 1.30613 1.25375 1.06201 1.09660 1.09246 0.79619 0.76635 0.77845 1.93623 1.78777 1.77592 1.43732 1.93613 1.81199 1.33502 1.85550 1.30601 1.05724 1.16057 1.18575 1.21750 0.91744 0.99509 0.87489 1.22409 0.94961 0.90539 1.00974 0.92737 0.95031 0.99099 0.95693 0.88369 0.90482 0.90114 0.88099 0.87944 0.89136 0.88182 0.84530 0.84452 0.83134 0.84715 0.90952 0.89386 0.90040 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.51 -13.53 8.41 -34.44 -0.29 -13.82 16 8 H 0.06 1.62 7.13 -52.49 -0.37 1.25 16 9 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 10 N -0.54 -10.55 4.62 -235.76 -1.09 -11.63 16 11 C 0.05 0.82 5.46 -3.70 -0.02 0.80 16 12 C 0.11 1.31 6.50 -3.60 -0.02 1.29 16 13 N -0.61 -7.96 3.01 -172.46 -0.52 -8.48 16 14 C 0.51 6.20 7.47 -10.99 -0.08 6.12 16 15 O -0.55 -8.15 13.98 5.55 0.08 -8.07 16 16 C -0.13 -1.00 3.44 -27.88 -0.10 -1.10 16 17 C -0.07 -0.44 2.24 -89.55 -0.20 -0.64 16 18 H 0.10 0.69 7.95 -51.93 -0.41 0.28 16 19 C -0.12 -0.48 5.80 -25.19 -0.15 -0.63 16 20 C -0.59 -2.62 7.31 38.24 0.28 -2.34 16 21 S 2.38 19.47 6.11 -107.50 -0.66 18.81 16 22 O -0.94 -11.05 18.14 -57.71 -1.05 -12.10 16 23 O -0.94 -11.38 18.15 -57.71 -1.05 -12.43 16 24 C -0.58 -4.62 5.83 37.76 0.22 -4.40 16 25 C 0.12 1.69 6.59 -3.60 -0.02 1.67 16 26 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.03 0.84 7.97 -51.92 -0.41 0.43 16 29 H -0.01 -0.24 8.13 -51.93 -0.42 -0.66 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 1.75 6.67 -51.93 -0.35 1.41 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.70 6.02 -51.93 -0.31 0.39 16 34 H 0.10 0.64 7.55 -51.93 -0.39 0.25 16 35 H 0.10 0.54 7.99 -51.93 -0.42 0.12 16 36 H 0.09 0.29 8.11 -51.93 -0.42 -0.13 16 37 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.14 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.15 1.41 7.30 -51.93 -0.38 1.03 16 41 H 0.13 1.03 7.81 -51.93 -0.41 0.62 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.26 7.07 -51.93 -0.37 0.89 16 44 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -36.45 365.97 -10.74 -47.19 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.17 Total: -3.17 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.52 Total: -6.20 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.87 Total: -45.20 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -2.02 Total: -32.59 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 19.47 SS G_CDS: -0.66 Total: 18.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.45 -10.74 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363623248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.380 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds