Wall clock time and date at job start Tue Mar 31 2020 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 120.00113 * 2 1 4 4 N 1.34777 * 120.00375 * 180.02562 * 2 1 3 5 5 C 1.46969 * 120.58914 * 5.68688 * 4 2 1 6 6 C 1.52931 * 108.69175 * 235.07688 * 5 4 2 7 7 N 1.46964 * 108.87256 * 310.79651 * 6 5 4 8 8 S 1.65599 * 120.59257 * 235.20323 * 7 6 5 9 9 O 1.42101 * 104.27589 * 153.64620 * 8 7 6 10 10 O 1.42103 * 104.27788 * 25.79565 * 8 7 6 11 11 C 1.81394 * 104.45282 * 269.72048 * 8 7 6 12 12 C 1.52999 * 109.47142 * 185.09878 * 11 8 7 13 13 C 1.50690 * 115.56505 * 330.48989 * 12 11 8 14 14 H 1.08002 * 120.00430 * 89.37105 * 13 12 11 15 15 C 1.37884 * 120.00365 * 269.37404 * 13 12 11 16 16 N 1.31515 * 119.99320 * 5.04109 * 15 13 12 17 17 Si 1.86788 * 120.00440 * 185.04527 * 15 13 12 18 18 H 1.48501 * 109.47478 * 59.99718 * 17 15 13 19 19 H 1.48498 * 109.47315 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47099 * 299.99523 * 17 15 13 21 21 C 1.53008 * 117.49477 * 116.17968 * 12 11 8 22 22 C 1.53003 * 59.99960 * 107.48774 * 21 12 11 23 23 C 1.46969 * 118.81466 * 54.92924 * 7 6 5 24 24 H 1.08990 * 109.61122 * 185.10602 * 23 7 6 25 25 C 1.53009 * 109.60576 * 64.77157 * 23 7 6 26 26 C 1.46964 * 120.59772 * 185.67218 * 4 2 1 27 27 H 1.08999 * 109.46858 * 185.48188 * 1 2 3 28 28 H 1.09002 * 109.46737 * 305.47617 * 1 2 3 29 29 H 1.09000 * 109.47644 * 65.48021 * 1 2 3 30 30 H 1.08993 * 109.61548 * 354.95426 * 5 4 2 31 31 H 1.09009 * 109.60825 * 115.29341 * 5 4 2 32 32 H 1.08992 * 109.53038 * 190.95490 * 6 5 4 33 33 H 1.09001 * 109.45549 * 70.58895 * 6 5 4 34 34 H 1.09001 * 109.46870 * 65.10165 * 11 8 7 35 35 H 1.09004 * 109.47435 * 305.10302 * 11 8 7 36 36 H 0.97002 * 119.99897 * 174.99776 * 16 15 13 37 37 H 1.09004 * 117.49278 * 214.97874 * 21 12 11 38 38 H 1.08995 * 117.50179 * 359.97438 * 21 12 11 39 39 H 1.08999 * 117.49759 * 252.50912 * 22 21 12 40 40 H 1.09005 * 117.49528 * 107.48789 * 22 21 12 41 41 H 1.09000 * 109.47434 * 60.00275 * 25 23 7 42 42 H 1.09001 * 109.46397 * 180.02562 * 25 23 7 43 43 H 1.09000 * 109.46884 * 299.99804 * 25 23 7 44 44 H 1.08993 * 109.60791 * 5.04199 * 26 4 2 45 45 H 1.09001 * 109.60497 * 244.53655 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4647 -2.4443 -0.1265 6 6 1.8446 -3.3379 1.0551 7 7 3.3083 -3.3565 1.1857 8 16 4.1364 -4.7906 1.1841 9 8 5.4292 -4.4481 0.7038 10 8 3.2972 -5.6790 0.4590 11 6 4.2131 -5.2710 2.9315 12 6 5.0714 -6.5291 3.0773 13 6 5.0731 -7.4564 1.8895 14 1 5.8002 -7.3239 1.1019 15 6 4.1465 -8.4742 1.8080 16 7 3.1998 -8.5756 2.7153 17 14 4.2358 -9.7089 0.4093 18 1 5.5413 -10.4152 0.4549 19 1 3.1339 -10.6947 0.5481 20 1 4.1027 -8.9980 -0.8877 21 6 6.3666 -6.4111 3.8834 22 6 5.1678 -7.1613 4.4673 23 6 4.0245 -2.0793 1.3116 24 1 5.0992 -2.2607 1.3076 25 6 3.6245 -1.3932 2.6194 26 6 3.6451 -1.1855 0.1245 27 1 -0.3633 -1.0230 0.0982 28 1 -0.3633 0.5964 0.8369 29 1 -0.3634 0.4265 -0.9350 30 1 0.3899 -2.2633 -0.1193 31 1 1.7473 -2.9318 -1.0596 32 1 1.4801 -4.3498 0.8786 33 1 1.4009 -2.9406 1.9680 34 1 3.2064 -5.4736 3.2971 35 1 4.6543 -4.4608 3.5122 36 1 2.5056 -9.2462 2.6190 37 1 7.2199 -7.0043 3.5544 38 1 6.6074 -5.4372 4.3094 39 1 4.6197 -6.6810 5.2778 40 1 5.2325 -8.2481 4.5225 41 1 3.8813 -2.0368 3.4608 42 1 4.1566 -0.4462 2.7103 43 1 2.5505 -1.2074 2.6185 44 1 4.0102 -0.1732 0.2973 45 1 4.0852 -1.5848 -0.7893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365680847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:55 Heat of formation + Delta-G solvation = -67.462493 kcal Electronic energy + Delta-G solvation = -28383.727114 eV Core-core repulsion = 24529.840806 eV Total energy + Delta-G solvation = -3853.886308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32386 -37.82359 -36.74854 -36.23998 -34.94845 -34.24812 -32.45521 -32.06672 -30.08243 -28.26011 -28.16515 -26.02568 -25.45470 -23.68169 -21.20512 -21.02604 -19.92485 -19.28627 -17.93454 -17.45418 -16.57741 -16.40744 -16.26188 -15.73360 -15.55736 -15.13662 -14.64433 -14.42904 -14.18281 -13.90347 -13.79780 -13.61213 -13.12113 -13.09472 -13.02714 -12.47760 -12.32343 -12.28152 -11.89838 -11.81438 -11.60424 -11.42425 -11.28301 -11.12240 -11.06187 -10.89562 -10.82375 -10.67726 -10.55404 -10.32036 -10.12775 -9.90668 -9.75104 -9.39630 -8.98760 -8.54166 -8.44014 -8.12711 -6.19728 -4.37364 1.08803 2.48159 2.83243 3.32064 3.34300 3.40561 3.42922 4.37038 4.37294 4.58282 4.69283 4.75293 4.77278 4.90869 5.04173 5.08989 5.11839 5.14602 5.21147 5.24978 5.28903 5.40295 5.52378 5.61477 5.63040 5.71491 5.75555 5.83134 5.84385 5.94529 6.09906 6.20698 6.29203 6.34415 6.39669 6.58233 6.68432 6.81914 6.93196 7.15544 7.27378 7.42392 7.73743 8.01967 8.15391 8.73737 9.41927 10.87051 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.004180 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.133982 B = 6697.170559 C = 7320.699235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.553 6.553 4 N -0.606 5.606 5 C 0.088 3.912 6 C 0.102 3.898 7 N -1.011 6.011 8 S 2.628 3.372 9 O -0.970 6.970 10 O -0.937 6.937 11 C -0.561 4.561 12 C 0.050 3.950 13 C -0.554 4.554 14 H 0.069 0.931 15 C 0.103 3.897 16 N -0.863 5.863 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.206 4.206 22 C -0.138 4.138 23 C 0.130 3.870 24 H 0.113 0.887 25 C -0.160 4.160 26 C 0.106 3.894 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 12.998 -0.908 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.302 3.698 3 O -0.431 6.431 4 N -0.340 5.340 5 C -0.036 4.036 6 C -0.024 4.024 7 N -0.846 5.846 8 S 2.726 3.274 9 O -0.960 6.960 10 O -0.927 6.927 11 C -0.693 4.693 12 C 0.047 3.953 13 C -0.592 4.592 14 H 0.087 0.913 15 C -0.105 4.105 16 N -0.496 5.496 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.243 4.243 22 C -0.177 4.177 23 C 0.022 3.978 24 H 0.130 0.870 25 C -0.219 4.219 26 C -0.018 4.018 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.071 12.996 -1.603 14.433 hybrid contribution -0.313 -0.683 0.173 0.771 sum -6.384 12.312 -1.429 13.943 Atomic orbital electron populations 1.22033 0.92036 1.04694 1.05187 1.20784 0.90580 0.83011 0.75433 1.90697 1.70677 1.31062 1.50681 1.48062 1.07533 1.06170 1.72230 1.22238 0.97555 0.83916 0.99857 1.21648 0.80856 1.02072 0.97848 1.58469 1.15033 1.21623 1.89518 1.04637 0.73385 0.71151 0.78219 1.93459 1.40659 1.82793 1.79119 1.93514 1.67709 1.62443 1.69059 1.30052 1.09131 1.06744 1.23408 1.18153 0.92365 0.91369 0.93371 1.20616 1.18624 1.14751 1.05214 0.91254 1.24882 0.94211 0.96320 0.95126 1.69953 1.12154 1.34123 1.33359 0.86666 0.77797 0.80642 0.83320 1.19888 1.20895 1.19061 1.23162 0.93536 1.00351 1.07261 1.22486 0.99596 0.99107 0.96495 1.21334 0.97780 0.83812 0.94836 0.86959 1.22121 1.02241 1.00631 0.96914 1.21967 0.79887 1.01519 0.98457 0.89697 0.88795 0.88847 0.88103 0.90210 0.87195 0.91314 0.86149 0.88592 0.92430 0.89774 0.91477 0.91780 0.89394 0.91999 0.91560 0.92321 0.88092 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 10.08 36.00 0.36 -0.94 16 2 C 0.51 5.96 7.79 -10.99 -0.09 5.88 16 3 O -0.55 -8.55 16.53 5.56 0.09 -8.46 16 4 N -0.61 -6.93 2.59 -172.76 -0.45 -7.38 16 5 C 0.09 0.88 6.49 -3.82 -0.02 0.86 16 6 C 0.10 1.23 6.13 -3.82 -0.02 1.21 16 7 N -1.01 -15.02 2.92 -106.47 -0.31 -15.33 16 8 S 2.63 53.23 4.37 -107.50 -0.47 52.76 16 9 O -0.97 -21.80 16.60 -57.54 -0.95 -22.75 16 10 O -0.94 -21.95 15.68 -57.54 -0.90 -22.85 16 11 C -0.56 -11.35 6.38 37.16 0.24 -11.11 16 12 C 0.05 1.18 1.87 -155.66 -0.29 0.89 16 13 C -0.55 -14.96 6.56 -34.44 -0.23 -15.19 16 14 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 15 C 0.10 2.78 5.37 -17.82 -0.10 2.69 16 16 N -0.86 -23.37 12.62 55.43 0.70 -22.67 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.21 -4.42 9.88 -26.73 -0.26 -4.68 16 22 C -0.14 -3.13 9.09 -26.73 -0.24 -3.37 16 23 C 0.13 1.70 3.22 -67.48 -0.22 1.48 16 24 H 0.11 1.54 6.88 -51.93 -0.36 1.18 16 25 C -0.16 -1.80 9.14 37.16 0.34 -1.46 16 26 C 0.11 1.32 5.95 -3.60 -0.02 1.30 16 27 H 0.08 0.44 5.18 -51.93 -0.27 0.18 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.66 5.06 -51.93 -0.26 0.40 16 31 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.11 1.42 6.87 -51.93 -0.36 1.06 16 33 H 0.07 0.69 7.42 -51.93 -0.39 0.30 16 34 H 0.12 2.39 8.14 -51.92 -0.42 1.97 16 35 H 0.10 1.63 7.88 -51.92 -0.41 1.22 16 36 H 0.27 6.89 8.32 -40.82 -0.34 6.55 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.65 7.03 -51.93 -0.37 0.28 16 44 H 0.10 1.26 7.00 -51.93 -0.36 0.89 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -34.02 369.02 -9.27 -43.28 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.96 Total: 3.82 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -0.55 Total: -22.44 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.06 Total: -45.38 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -1.77 Total: -54.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.47 Total: 52.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.02 -9.27 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365680847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.178 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds