Wall clock time and date at job start Tue Mar 31 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21276 * 120.00517 * 2 1 4 4 N 1.34781 * 119.99526 * 179.97438 * 2 1 3 5 5 C 1.46963 * 120.58949 * 184.07801 * 4 2 1 6 6 C 1.53373 * 108.63517 * 235.20101 * 5 4 2 7 7 N 1.46959 * 108.63743 * 310.58017 * 6 5 4 8 8 S 1.65595 * 120.59621 * 235.20288 * 7 6 5 9 9 O 1.42104 * 104.27610 * 12.19087 * 8 7 6 10 10 O 1.42098 * 104.28233 * 140.05022 * 8 7 6 11 11 C 1.81406 * 104.44932 * 256.12147 * 8 7 6 12 12 C 1.52999 * 109.47277 * 174.89432 * 11 8 7 13 13 C 1.50703 * 115.55063 * 40.29083 * 12 11 8 14 14 H 1.07998 * 120.00472 * 267.21758 * 13 12 11 15 15 C 1.37882 * 119.99321 * 87.21213 * 13 12 11 16 16 N 1.31515 * 120.00192 * 2.14514 * 15 13 12 17 17 Si 1.86801 * 119.99543 * 182.14790 * 15 13 12 18 18 H 1.48499 * 109.47168 * 60.00324 * 17 15 13 19 19 H 1.48503 * 109.47019 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47370 * 299.99940 * 17 15 13 21 21 C 1.52998 * 117.49702 * 254.59052 * 12 11 8 22 22 C 1.52999 * 117.49943 * 185.96847 * 12 11 8 23 23 C 1.46965 * 118.81009 * 55.22086 * 7 6 5 24 24 H 1.09005 * 109.61154 * 64.52156 * 23 7 6 25 25 C 1.53001 * 109.61018 * 184.85923 * 23 7 6 26 26 C 1.46959 * 120.59849 * 4.05344 * 4 2 1 27 27 H 1.08993 * 109.47705 * 185.31748 * 1 2 3 28 28 H 1.09001 * 109.47136 * 305.32484 * 1 2 3 29 29 H 1.09003 * 109.47063 * 65.31490 * 1 2 3 30 30 H 1.09005 * 109.61109 * 115.46033 * 5 4 2 31 31 H 1.09004 * 109.75711 * 355.03201 * 5 4 2 32 32 H 1.08995 * 109.61254 * 190.83010 * 6 5 4 33 33 H 1.09007 * 109.74415 * 70.40838 * 6 5 4 34 34 H 1.08995 * 109.47180 * 294.89411 * 11 8 7 35 35 H 1.09005 * 109.47123 * 54.89677 * 11 8 7 36 36 H 0.96997 * 119.99865 * 185.01176 * 16 15 13 37 37 H 1.09003 * 117.50248 * 359.97438 * 21 12 11 38 38 H 1.09004 * 117.49851 * 145.02413 * 21 12 11 39 39 H 1.08996 * 117.49715 * 214.97771 * 22 12 11 40 40 H 1.09000 * 117.49745 * 359.97438 * 22 12 11 41 41 H 1.09002 * 109.47008 * 73.44357 * 25 23 7 42 42 H 1.08998 * 109.47301 * 193.44677 * 25 23 7 43 43 H 1.09000 * 109.47200 * 313.44564 * 25 23 7 44 44 H 1.09003 * 109.60420 * 5.05342 * 26 4 2 45 45 H 1.09001 * 109.61359 * 244.54047 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6475 -1.1841 0.0905 6 6 4.2025 -1.9766 -1.0995 7 7 3.4836 -3.2553 -1.1885 8 16 4.3115 -4.6895 -1.1878 9 8 5.6318 -4.3318 -0.8026 10 8 3.5206 -5.5504 -0.3801 11 6 4.2783 -5.2321 -2.9185 12 6 5.1271 -6.4956 -3.0732 13 6 5.0046 -7.5016 -1.9578 14 1 5.6932 -7.4725 -1.1263 15 6 4.0132 -8.4590 -1.9987 16 7 3.2011 -8.5209 -3.0313 17 14 3.8236 -9.6680 -0.5874 18 1 3.5521 -8.9240 0.6687 19 1 2.6927 -10.5874 -0.8718 20 1 5.0749 -10.4534 -0.4370 21 6 6.4926 -6.3511 -3.7479 22 6 5.3414 -7.0337 -4.4894 23 6 2.0169 -3.2384 -1.2784 24 1 1.7129 -2.7606 -2.2098 25 6 1.4834 -4.6719 -1.2389 26 6 1.4619 -2.4460 -0.0883 27 1 -0.3634 -1.0231 0.0952 28 1 -0.3633 0.5942 0.8385 29 1 -0.3633 0.4292 -0.9338 30 1 3.9515 -1.6619 1.0219 31 1 4.0302 -0.1639 0.0610 32 1 5.2657 -2.1643 -0.9502 33 1 4.0567 -1.4102 -2.0194 34 1 3.2509 -5.4463 -3.2125 35 1 4.6813 -4.4437 -3.5543 36 1 2.4592 -9.1457 -3.0280 37 1 6.7862 -5.3560 -4.0820 38 1 7.3028 -6.9837 -3.3850 39 1 5.3942 -8.1152 -4.6142 40 1 4.8774 -6.4877 -5.3108 41 1 1.5710 -5.0644 -0.2258 42 1 0.4364 -4.6785 -1.5419 43 1 2.0629 -5.2941 -1.9209 44 1 0.3986 -2.2582 -0.2377 45 1 1.6102 -3.0137 0.8303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365680848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:00 Heat of formation + Delta-G solvation = -56.801548 kcal Electronic energy + Delta-G solvation = -28522.690736 eV Core-core repulsion = 24669.266721 eV Total energy + Delta-G solvation = -3853.424015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.25446 -37.87572 -36.77500 -36.47999 -35.04580 -34.14642 -32.79778 -32.07058 -30.11255 -28.39038 -27.44758 -26.38575 -25.44551 -22.97268 -21.72311 -21.19337 -19.63993 -19.40124 -18.12951 -17.34391 -16.70823 -16.40486 -16.03241 -15.89625 -15.59561 -15.21915 -14.81483 -14.58218 -14.23244 -13.87073 -13.72157 -13.66290 -13.15271 -13.09380 -12.72876 -12.53509 -12.23307 -12.13926 -11.94422 -11.80197 -11.66618 -11.51192 -11.16516 -11.11185 -11.07997 -10.91572 -10.86901 -10.55317 -10.38578 -10.14291 -10.10890 -9.88127 -9.72139 -9.39250 -9.07606 -8.53162 -8.45920 -8.10892 -6.18926 -4.34876 1.03295 2.46461 2.81141 3.32129 3.33911 3.35597 3.45116 4.35568 4.37758 4.57858 4.61573 4.66813 4.77028 4.93807 5.05097 5.11267 5.11597 5.13757 5.19295 5.25267 5.28588 5.38777 5.55977 5.61780 5.66345 5.72781 5.74411 5.87269 5.90729 6.09500 6.12538 6.29617 6.31908 6.35986 6.56008 6.67253 6.74197 6.80581 6.95552 7.16090 7.25523 7.43510 7.73627 8.00153 8.14310 8.73699 9.42547 10.87944 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.004297 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.196462 B = 6514.445992 C = 7097.435128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.512 3.488 3 O -0.553 6.553 4 N -0.609 5.609 5 C 0.099 3.901 6 C 0.102 3.898 7 N -1.013 6.013 8 S 2.622 3.378 9 O -0.974 6.974 10 O -0.935 6.935 11 C -0.563 4.563 12 C 0.045 3.955 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.098 3.902 16 N -0.869 5.869 17 Si 0.887 3.113 18 H -0.263 1.263 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.207 4.207 22 C -0.135 4.135 23 C 0.142 3.858 24 H 0.074 0.926 25 C -0.187 4.187 26 C 0.093 3.907 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.265 0.735 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 12.118 2.023 14.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.302 3.698 3 O -0.432 6.432 4 N -0.342 5.342 5 C -0.025 4.025 6 C -0.024 4.024 7 N -0.849 5.849 8 S 2.721 3.279 9 O -0.964 6.964 10 O -0.925 6.925 11 C -0.695 4.695 12 C 0.043 3.957 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.109 4.109 16 N -0.504 5.504 17 Si 0.713 3.287 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.244 4.244 22 C -0.174 4.174 23 C 0.034 3.966 24 H 0.092 0.908 25 C -0.245 4.245 26 C -0.031 4.031 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.369 12.164 2.700 13.993 hybrid contribution -0.470 -0.621 -0.214 0.807 sum -6.839 11.543 2.486 13.645 Atomic orbital electron populations 1.22028 0.91933 1.04704 1.05248 1.20817 0.90649 0.82998 0.75374 1.90696 1.70680 1.31067 1.50735 1.48116 1.07348 1.06152 1.72607 1.21971 0.79503 1.02251 0.98821 1.21775 0.97917 0.84509 0.98221 1.58408 1.14226 1.22022 1.90238 1.04834 0.72957 0.71606 0.78496 1.93442 1.38345 1.82442 1.82221 1.93571 1.68840 1.64613 1.65491 1.30138 1.09741 1.07129 1.22515 1.18203 0.91436 0.91293 0.94810 1.20539 1.17022 1.14286 1.05603 0.91487 1.24868 0.94917 0.96096 0.95035 1.69986 1.15401 1.36697 1.28270 0.86699 0.77784 0.80554 0.83627 1.18775 1.21064 1.20027 1.23151 0.93454 1.00195 1.07606 1.22485 1.00400 0.99683 0.94850 1.21281 0.79781 0.97712 0.97780 0.90760 1.22712 1.01812 0.93003 1.06977 1.22427 0.96852 0.84030 0.99818 0.89725 0.88783 0.88743 0.90792 0.88012 0.87191 0.91424 0.85603 0.88508 0.92572 0.91380 0.89703 0.89224 0.91803 0.88005 0.91204 0.90512 0.88177 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 10.04 36.00 0.36 -0.97 16 2 C 0.51 6.09 7.80 -10.99 -0.09 6.00 16 3 O -0.55 -8.68 16.51 5.56 0.09 -8.59 16 4 N -0.61 -7.13 2.95 -172.49 -0.51 -7.64 16 5 C 0.10 1.23 6.59 -3.60 -0.02 1.21 16 6 C 0.10 1.35 6.63 -3.60 -0.02 1.33 16 7 N -1.01 -15.22 3.18 -106.22 -0.34 -15.56 16 8 S 2.62 52.21 4.04 -107.50 -0.43 51.77 16 9 O -0.97 -21.53 16.28 -57.54 -0.94 -22.47 16 10 O -0.94 -20.88 12.96 -57.54 -0.75 -21.63 16 11 C -0.56 -11.36 5.98 37.16 0.22 -11.14 16 12 C 0.04 1.06 1.75 -155.66 -0.27 0.79 16 13 C -0.54 -14.29 6.87 -34.44 -0.24 -14.53 16 14 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.10 2.59 5.42 -17.82 -0.10 2.49 16 16 N -0.87 -23.09 12.59 55.43 0.70 -22.40 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.21 -4.46 9.88 -26.73 -0.26 -4.73 16 22 C -0.14 -3.05 9.10 -26.73 -0.24 -3.29 16 23 C 0.14 1.77 3.65 -67.49 -0.25 1.52 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 C -0.19 -2.64 7.69 37.16 0.29 -2.36 16 26 C 0.09 0.96 5.77 -3.60 -0.02 0.94 16 27 H 0.08 0.46 5.23 -51.93 -0.27 0.19 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.25 7.00 -51.93 -0.36 0.89 16 32 H 0.11 1.51 6.58 -51.93 -0.34 1.17 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.13 2.50 6.31 -51.93 -0.33 2.17 16 35 H 0.10 1.67 7.95 -51.92 -0.41 1.26 16 36 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 37 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 38 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.09 2.16 8.13 -51.93 -0.42 1.74 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.10 1.60 6.46 -51.93 -0.34 1.26 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.32 4.23 -51.93 -0.22 1.10 16 44 H 0.10 0.70 5.16 -51.93 -0.27 0.43 16 45 H 0.08 0.89 7.99 -51.93 -0.41 0.47 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -33.11 360.94 -9.12 -42.23 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.72 Total: 5.43 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -0.64 Total: -22.73 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.15 Total: -45.60 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.59 Total: -52.69 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 52.21 SS G_CDS: -0.43 Total: 51.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.11 -9.12 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365680848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.568 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds