Wall clock time and date at job start Tue Mar 31 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47111 * 2 1 4 4 H 1.09006 * 115.56018 * 29.31183 * 3 2 1 5 5 C 1.52993 * 117.49912 * 243.61800 * 3 2 1 6 6 C 1.52992 * 117.50022 * 174.99450 * 3 2 1 7 7 H 1.08999 * 117.52117 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50315 * 214.98091 * 6 3 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 6 3 10 10 N 1.34777 * 120.00290 * 179.97438 * 8 6 3 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 O 1.42898 * 109.47018 * 65.00125 * 13 11 10 15 15 C 1.53004 * 109.47065 * 204.72115 * 11 10 8 16 16 N 1.46502 * 109.46925 * 55.00022 * 15 11 10 17 17 C 1.34775 * 119.99947 * 180.02562 * 16 15 11 18 18 O 1.21280 * 119.99839 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00028 * 179.97438 * 17 16 15 20 20 S 1.80999 * 109.47017 * 179.97438 * 19 17 16 21 21 C 1.76204 * 99.99911 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99957 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00091 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99940 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00133 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46827 * 89.99538 * 25 23 21 27 27 H 1.48495 * 109.47192 * 209.99364 * 25 23 21 28 28 H 1.48493 * 109.47084 * 329.99460 * 25 23 21 29 29 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47860 * 300.00270 * 1 2 3 31 31 H 1.09005 * 109.46750 * 60.00585 * 1 2 3 32 32 H 1.09002 * 109.47307 * 240.00058 * 2 1 3 33 33 H 1.09005 * 109.46750 * 119.99414 * 2 1 3 34 34 H 1.09005 * 117.49750 * 145.01822 * 5 3 2 35 35 H 1.09001 * 117.49978 * 0.02562 * 5 3 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.47083 * 185.00118 * 13 11 10 38 38 H 1.08995 * 109.47300 * 304.99882 * 13 11 10 39 39 H 0.96709 * 114.00043 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47038 * 174.99692 * 15 11 10 41 41 H 1.08999 * 109.47047 * 295.00318 * 15 11 10 42 42 H 0.96997 * 120.00059 * 359.97438 * 16 15 11 43 43 H 1.08992 * 109.47087 * 299.99808 * 19 17 16 44 44 H 1.08999 * 109.46766 * 59.99867 * 19 17 16 45 45 H 0.97002 * 120.00285 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8440 1.9075 -1.2157 6 6 3.5500 1.6579 0.1184 7 1 4.1806 0.7722 0.1959 8 6 4.0227 2.8621 0.8916 9 8 3.2156 3.6170 1.3911 10 7 5.3423 3.1000 1.0278 11 6 5.8018 4.2672 1.7846 12 1 5.1119 5.0964 1.6278 13 6 5.8534 3.9214 3.2741 14 8 6.8427 2.9141 3.4952 15 6 7.1985 4.6682 1.3054 16 7 7.1744 4.8838 -0.1434 17 6 8.3003 5.2462 -0.7896 18 8 9.3332 5.3942 -0.1715 19 6 8.2757 5.4674 -2.2800 20 16 9.9279 5.9419 -2.8468 21 6 9.6170 6.1322 -4.5708 22 1 8.6258 5.9590 -4.9631 23 6 10.6462 6.5037 -5.4247 24 7 11.8544 6.7143 -4.9466 25 14 10.3168 6.7048 -7.2524 26 1 9.9130 8.1064 -7.5313 27 1 11.5492 6.3834 -8.0158 28 1 9.2261 5.7844 -7.6630 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.7213 2.9428 -1.5343 35 1 3.0093 1.1859 -2.0158 36 1 5.9878 2.4960 0.6286 37 1 6.1092 4.8136 3.8456 38 1 4.8798 3.5511 3.5951 39 1 6.9306 2.6455 4.4200 40 1 7.5037 5.5878 1.8046 41 1 7.9060 3.8738 1.5428 42 1 6.3484 4.7650 -0.6378 43 1 7.9703 4.5477 -2.7788 44 1 7.5683 6.2619 -2.5177 45 1 12.5736 6.9743 -5.5433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487947719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:50 Heat of formation + Delta-G solvation = -114.289345 kcal Electronic energy + Delta-G solvation = -25398.447374 eV Core-core repulsion = 21542.530501 eV Total energy + Delta-G solvation = -3855.916873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56616 -39.23366 -38.03910 -36.99985 -35.46305 -33.61853 -32.45647 -32.43058 -30.75002 -29.05861 -25.74330 -25.33564 -25.00104 -24.07139 -21.48861 -20.83718 -20.42291 -20.33995 -18.12515 -17.86870 -17.44655 -16.78300 -16.30851 -15.70072 -15.55302 -15.14949 -14.98473 -14.81578 -14.80622 -14.60156 -14.15549 -13.98263 -13.73781 -13.19914 -12.99675 -12.89765 -12.81247 -12.59099 -12.49195 -12.30669 -11.83601 -11.70466 -11.54916 -11.41897 -11.06747 -11.02820 -10.76880 -10.68449 -10.44056 -10.42590 -10.03510 -9.82419 -9.49542 -9.37206 -9.07584 -8.92703 -8.24230 -6.50483 -6.22028 -3.92645 2.18177 2.71363 3.02172 3.08493 3.22125 3.27617 3.31577 3.45585 3.68870 3.89832 4.19848 4.20080 4.37413 4.40537 4.44830 4.72994 4.75896 4.82239 4.94386 4.99700 5.03879 5.12182 5.13145 5.14165 5.27549 5.31373 5.41513 5.51136 5.53972 5.60617 5.64595 5.69671 5.76040 5.86572 5.89870 5.99139 6.12330 6.13447 6.55036 7.19319 7.26624 7.59117 7.65971 7.91584 8.34819 8.58570 9.23278 10.85356 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.002491 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.108831 B =11239.531149 C =13345.870320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.117 0.883 5 C -0.147 4.147 6 C -0.193 4.193 7 H 0.124 0.876 8 C 0.546 3.454 9 O -0.544 6.544 10 N -0.714 5.714 11 C 0.138 3.862 12 H 0.106 0.894 13 C 0.067 3.933 14 O -0.567 6.567 15 C 0.117 3.883 16 N -0.740 5.740 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.408 0.592 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.380 0.620 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.677 -12.661 14.326 28.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.135 0.865 5 C -0.184 4.184 6 C -0.214 4.214 7 H 0.142 0.858 8 C 0.333 3.667 9 O -0.422 6.422 10 N -0.366 5.366 11 C 0.033 3.967 12 H 0.124 0.876 13 C -0.012 4.012 14 O -0.372 6.372 15 C -0.008 4.008 16 N -0.395 5.395 17 C 0.318 3.682 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.243 0.757 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.228 0.772 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.243 -11.743 15.044 27.102 hybrid contribution -1.444 -0.387 -1.610 2.197 sum -20.687 -12.131 13.434 27.487 Atomic orbital electron populations 1.21740 0.95130 1.01684 1.02171 1.21164 0.96323 0.93605 1.02211 1.22482 0.91130 0.98754 1.01214 0.86459 1.23135 1.01577 1.03440 0.90257 1.22298 0.97850 0.98886 1.02401 0.85824 1.19721 0.82054 0.85516 0.79429 1.90695 1.53962 1.48537 1.48970 1.45940 1.07140 1.28430 1.55104 1.21358 0.96275 0.89075 0.89996 0.87577 1.22517 0.91758 0.91483 0.95478 1.86487 1.59603 1.58913 1.32219 1.21485 0.95330 1.02505 0.81461 1.45995 1.12599 1.72996 1.07947 1.20306 0.82832 0.75592 0.89437 1.90712 1.30824 1.49025 1.68368 1.23526 1.08339 1.04848 0.93665 1.85402 1.02578 1.88934 1.06372 1.22864 0.98718 1.54254 0.92519 0.90944 1.24996 0.94433 0.94663 0.99525 1.70018 1.00716 1.43756 1.35782 0.86164 0.77921 0.78614 0.82778 1.20274 1.20753 1.19699 0.92595 0.92537 0.92451 0.91535 0.91461 0.88116 0.87597 0.75697 0.92238 0.92650 0.77238 0.90203 0.89700 0.76846 0.89250 0.89265 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.87 37.16 0.37 -0.46 16 2 C -0.10 -0.57 6.22 -26.73 -0.17 -0.73 16 3 C -0.12 -0.88 5.25 -90.63 -0.48 -1.36 16 4 H 0.12 1.07 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -1.05 9.88 -26.74 -0.26 -1.31 16 6 C -0.19 -1.49 5.91 -91.78 -0.54 -2.04 16 7 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 8 C 0.55 5.44 7.58 -10.98 -0.08 5.36 16 9 O -0.54 -7.15 15.92 5.55 0.09 -7.06 16 10 N -0.71 -6.29 4.46 -53.81 -0.24 -6.53 16 11 C 0.14 1.28 2.53 -67.93 -0.17 1.11 16 12 H 0.11 1.04 7.58 -51.93 -0.39 0.65 16 13 C 0.07 0.54 6.84 37.16 0.25 0.79 16 14 O -0.57 -4.62 12.64 -35.23 -0.45 -5.07 16 15 C 0.12 1.34 5.12 -4.04 -0.02 1.32 16 16 N -0.74 -9.71 5.39 -60.29 -0.32 -10.03 16 17 C 0.53 9.82 7.85 -10.99 -0.09 9.73 16 18 O -0.52 -11.63 15.86 5.56 0.09 -11.54 16 19 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.35 7.88 -51.93 -0.41 -0.06 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 0.62 8.03 -51.93 -0.42 0.20 16 36 H 0.41 3.31 8.60 -40.82 -0.35 2.96 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.38 1.56 9.12 45.56 0.42 1.97 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.10 7.39 -51.93 -0.38 0.71 16 42 H 0.40 4.36 8.14 -40.82 -0.33 4.03 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -36.43 397.14 -8.58 -45.01 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.46 Total: 5.48 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.77 Total: -3.36 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.17 Total: -41.96 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.27 Total: -23.67 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.43 -8.58 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487947719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.281 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds