Wall clock time and date at job start Tue Mar 31 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.08994 * 115.56368 * 29.31403 * 3 2 1 5 5 C 1.53001 * 117.49930 * 243.62208 * 3 2 1 6 6 C 1.53002 * 60.00125 * 252.51318 * 5 3 2 7 7 H 1.08999 * 117.50141 * 107.51283 * 6 5 3 8 8 C 1.50704 * 117.49883 * 252.51428 * 6 5 3 9 9 O 1.21276 * 120.00229 * 68.60907 * 8 6 5 10 10 N 1.34780 * 119.99461 * 248.60741 * 8 6 5 11 11 C 1.46499 * 119.99728 * 179.97438 * 10 8 6 12 12 H 1.09010 * 109.46943 * 35.00338 * 11 10 8 13 13 C 1.52998 * 109.47265 * 275.00033 * 11 10 8 14 14 O 1.42891 * 109.46818 * 294.99865 * 13 11 10 15 15 C 1.52995 * 109.47051 * 154.99529 * 11 10 8 16 16 N 1.46499 * 109.47595 * 305.00183 * 15 11 10 17 17 C 1.34778 * 120.00278 * 179.97438 * 16 15 11 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 15 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00123 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00074 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99873 * 25 23 21 29 29 H 1.08998 * 109.46706 * 299.99650 * 1 2 3 30 30 H 1.08999 * 109.46853 * 59.99912 * 1 2 3 31 31 H 1.09000 * 109.46920 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46642 * 240.00323 * 2 1 3 33 33 H 1.08996 * 109.47037 * 120.00572 * 2 1 3 34 34 H 1.09006 * 117.49541 * 145.02313 * 5 3 2 35 35 H 1.08994 * 117.49961 * 0.02562 * 5 3 2 36 36 H 0.96999 * 120.00277 * 359.97438 * 10 8 6 37 37 H 1.09001 * 109.47187 * 54.99928 * 13 11 10 38 38 H 1.08994 * 109.46962 * 174.99739 * 13 11 10 39 39 H 0.96703 * 114.00216 * 179.97438 * 14 13 11 40 40 H 1.09008 * 109.47218 * 185.00014 * 15 11 10 41 41 H 1.09007 * 109.47175 * 65.00364 * 15 11 10 42 42 H 0.97000 * 119.99972 * 359.97438 * 16 15 11 43 43 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 44 44 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 45 45 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8440 1.9076 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1807 0.7721 0.1960 8 6 4.0229 2.8620 0.8915 9 8 3.2159 3.6167 1.3914 10 7 5.3425 3.1000 1.0274 11 6 5.8020 4.2708 1.7785 12 1 5.1235 4.4577 2.6110 13 6 5.8261 5.4913 0.8562 14 8 6.8010 5.2938 -0.1696 15 6 7.2102 4.0107 2.3172 16 7 7.2117 2.7747 3.1036 17 6 8.3516 2.3435 3.6792 18 8 9.3759 2.9791 3.5466 19 6 8.3532 1.0718 4.4877 20 16 10.0192 0.7642 5.1250 21 6 9.7379 -0.7364 6.0047 22 1 8.7514 -1.1755 6.0220 23 6 10.7857 -1.3574 6.6704 24 7 11.9882 -0.8224 6.6490 25 14 10.4893 -2.9523 7.5966 26 1 10.7141 -4.1031 6.6853 27 1 11.4270 -3.0396 8.7448 28 1 9.0911 -2.9822 8.0960 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7213 2.9428 -1.5343 35 1 3.0092 1.1861 -2.0159 36 1 5.9880 2.4962 0.6279 37 1 4.8436 5.6238 0.4031 38 1 6.0820 6.3789 1.4347 39 1 6.8708 6.0299 -0.7929 40 1 7.5171 4.8440 2.9494 41 1 7.9056 3.9118 1.4836 42 1 6.3923 2.2665 3.2100 43 1 8.0462 0.2388 3.8553 44 1 7.6581 1.1704 5.3215 45 1 12.7203 -1.2563 7.1145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487947724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:54 Heat of formation + Delta-G solvation = -114.228012 kcal Electronic energy + Delta-G solvation = -25389.995088 eV Core-core repulsion = 21534.080875 eV Total energy + Delta-G solvation = -3855.914213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57078 -39.23668 -38.03943 -37.00743 -35.46522 -33.61956 -32.44229 -32.42802 -30.75371 -29.06286 -25.74310 -25.33152 -25.00044 -24.07352 -21.52582 -20.82411 -20.42531 -20.33508 -18.12653 -17.87294 -17.43930 -16.81194 -16.32314 -15.70087 -15.42831 -15.23274 -14.97069 -14.89457 -14.80557 -14.54439 -14.18590 -13.96239 -13.73525 -13.19995 -12.97182 -12.94247 -12.81427 -12.58723 -12.49287 -12.29008 -11.83890 -11.69982 -11.55021 -11.41149 -11.06620 -11.02799 -10.76770 -10.67794 -10.47190 -10.41364 -10.04053 -9.82375 -9.49699 -9.37377 -9.07538 -8.92834 -8.24284 -6.50513 -6.22062 -3.92633 2.17801 2.71219 3.01702 3.08339 3.22131 3.27577 3.31622 3.44448 3.69108 3.89882 4.19412 4.20080 4.36351 4.38357 4.45433 4.72712 4.76773 4.82373 4.96297 4.99591 5.05116 5.11960 5.12964 5.14123 5.26575 5.27204 5.40719 5.51013 5.53033 5.62200 5.64500 5.71200 5.77248 5.86520 5.89738 6.00036 6.12215 6.13365 6.54920 7.19142 7.26421 7.59189 7.65771 7.91358 8.34870 8.58432 9.23295 10.85350 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.002552 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.219347 B =10970.794193 C =13243.198545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.116 4.116 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.193 4.193 7 H 0.125 0.875 8 C 0.546 3.454 9 O -0.544 6.544 10 N -0.714 5.714 11 C 0.138 3.862 12 H 0.107 0.893 13 C 0.068 3.932 14 O -0.566 6.566 15 C 0.117 3.883 16 N -0.740 5.740 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.408 0.592 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.380 0.620 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.032 7.806 -17.181 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.134 4.134 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.214 4.214 7 H 0.143 0.857 8 C 0.333 3.667 9 O -0.421 6.421 10 N -0.366 5.366 11 C 0.033 3.967 12 H 0.125 0.875 13 C -0.012 4.012 14 O -0.372 6.372 15 C -0.008 4.008 16 N -0.396 5.396 17 C 0.318 3.682 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.243 0.757 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.227 0.773 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.601 8.853 -16.648 27.198 hybrid contribution -1.418 -1.681 0.351 2.227 sum -21.019 7.172 -16.297 27.547 Atomic orbital electron populations 1.21739 0.95134 1.01746 1.02088 1.21175 0.96328 0.93530 1.02372 1.22485 0.91184 0.98842 1.00902 0.86443 1.23094 1.01957 1.03084 0.90344 1.22312 0.97972 0.98966 1.02159 0.85674 1.19716 0.82065 0.85487 0.79457 1.90693 1.53957 1.48931 1.48561 1.45938 1.07144 1.28038 1.55482 1.21360 0.96203 0.85248 0.93911 0.87545 1.22508 0.91980 0.96854 0.89843 1.86489 1.60375 1.47259 1.43055 1.21487 0.95184 0.88127 0.95994 1.46000 1.12281 1.26510 1.54771 1.20305 0.82726 0.86359 0.78775 1.90711 1.31812 1.57027 1.59359 1.23529 1.08374 0.96736 1.01758 1.85400 1.01872 1.31444 1.64565 1.22866 0.98450 1.09612 1.37436 0.90943 1.24999 0.94439 0.98169 0.96005 1.70022 1.00337 1.38880 1.41042 0.86164 0.78262 0.81980 0.79071 1.20272 1.20750 1.19690 0.92472 0.92590 0.92536 0.91583 0.91202 0.88428 0.87726 0.75693 0.92718 0.92244 0.77257 0.90202 0.89690 0.76847 0.89264 0.89244 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.87 37.16 0.37 -0.50 16 2 C -0.10 -0.60 6.22 -26.73 -0.17 -0.77 16 3 C -0.12 -0.87 5.25 -90.62 -0.48 -1.34 16 4 H 0.12 1.07 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -0.97 9.88 -26.73 -0.26 -1.24 16 6 C -0.19 -1.49 5.91 -91.77 -0.54 -2.04 16 7 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 8 C 0.55 5.44 7.58 -10.98 -0.08 5.36 16 9 O -0.54 -7.15 15.92 5.56 0.09 -7.06 16 10 N -0.71 -6.28 4.46 -53.81 -0.24 -6.52 16 11 C 0.14 1.28 2.53 -67.93 -0.17 1.11 16 12 H 0.11 1.05 7.58 -51.92 -0.39 0.65 16 13 C 0.07 0.54 6.85 37.16 0.25 0.79 16 14 O -0.57 -4.59 12.64 -35.23 -0.45 -5.03 16 15 C 0.12 1.34 5.12 -4.04 -0.02 1.32 16 16 N -0.74 -9.73 5.39 -60.29 -0.32 -10.05 16 17 C 0.53 9.83 7.85 -10.99 -0.09 9.74 16 18 O -0.52 -11.63 15.86 5.56 0.09 -11.54 16 19 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 25 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.36 7.88 -51.92 -0.41 -0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.53 8.03 -51.93 -0.42 0.12 16 36 H 0.41 3.31 8.60 -40.82 -0.35 2.95 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.38 1.54 9.12 45.56 0.42 1.95 16 40 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 41 H 0.08 1.10 7.39 -51.92 -0.38 0.71 16 42 H 0.40 4.37 8.14 -40.82 -0.33 4.04 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -36.48 397.15 -8.58 -45.06 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.46 Total: 5.42 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.77 Total: -3.37 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.17 Total: -42.00 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.27 Total: -23.64 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.48 -8.58 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487947724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.171 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds