Wall clock time and date at job start Tue Mar 31 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 C 1.53000 * 109.47291 * 119.99792 * 2 1 3 5 5 C 1.50706 * 109.47131 * 174.99983 * 4 2 1 6 6 O 1.21279 * 119.99736 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00006 * 179.97438 * 5 4 2 8 8 C 1.47026 * 125.65092 * 359.97438 * 7 5 4 9 9 C 1.54321 * 107.27395 * 178.99355 * 8 7 5 10 10 H 1.08994 * 110.71935 * 96.16904 * 9 8 7 11 11 O 1.42896 * 110.87163 * 219.37297 * 9 8 7 12 12 C 1.55156 * 102.94252 * 337.80751 * 9 8 7 13 13 H 1.09005 * 111.00506 * 277.39412 * 12 9 8 14 14 N 1.46499 * 111.00695 * 153.57519 * 12 9 8 15 15 C 1.34778 * 120.00278 * 158.17620 * 14 12 9 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00123 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00074 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99873 * 23 21 19 27 27 C 1.47466 * 125.63156 * 180.02562 * 7 5 4 28 28 H 1.09003 * 109.46859 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47362 * 59.99793 * 1 2 3 30 30 H 1.08998 * 109.46773 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47500 * 239.99992 * 2 1 3 32 32 H 1.09002 * 109.46856 * 299.99964 * 3 2 1 33 33 H 1.09003 * 109.47190 * 60.00305 * 3 2 1 34 34 H 1.09002 * 109.47184 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46844 * 55.00420 * 4 2 1 36 36 H 1.08996 * 109.47530 * 294.99953 * 4 2 1 37 37 H 1.09000 * 109.88220 * 59.57591 * 8 7 5 38 38 H 1.09002 * 110.00740 * 298.48728 * 8 7 5 39 39 H 0.96699 * 114.00086 * 293.60583 * 11 9 8 40 40 H 0.97000 * 119.99972 * 338.17976 * 14 12 9 41 41 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 42 42 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 43 43 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.35096 * 85.23368 * 27 7 5 45 45 H 1.09008 * 110.40506 * 322.89834 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.8293 1.1889 6 8 4.1450 -0.3739 0.2403 7 7 4.2150 -1.4311 2.1894 8 6 3.6126 -2.0224 3.3933 9 6 4.7612 -2.6141 4.2371 10 1 5.0757 -1.9103 5.0077 11 8 4.3750 -3.8601 4.8202 12 6 5.8885 -2.8232 3.1916 13 1 5.7504 -3.7590 2.6500 14 7 7.2082 -2.7766 3.8259 15 6 8.2666 -3.3531 3.2226 16 8 8.1265 -3.9101 2.1545 17 6 9.6241 -3.3056 3.8753 18 16 10.8275 -4.1599 2.8275 19 6 12.2810 -3.9561 3.8024 20 1 12.2310 -3.4267 4.7424 21 6 13.4892 -4.4815 3.3652 22 7 13.5500 -5.1272 2.2198 23 14 15.0286 -4.2722 4.4025 24 1 15.1538 -5.4176 5.3392 25 1 16.2196 -4.2246 3.5167 26 1 14.9362 -3.0079 5.1760 27 6 5.6778 -1.6046 2.2583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1583 2.1370 37 1 2.9162 -2.8116 3.1099 38 1 3.0903 -1.2548 3.9644 39 1 3.6729 -3.7844 5.4808 40 1 7.3204 -2.3308 4.6800 41 1 9.5768 -3.7949 4.8482 42 1 9.9285 -2.2671 4.0053 43 1 14.3944 -5.4940 1.9142 44 1 6.1453 -0.7161 2.6827 45 1 6.0831 -1.8111 1.2676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489293713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:39 Heat of formation + Delta-G solvation = -128.046500 kcal Electronic energy + Delta-G solvation = -25699.220967 eV Core-core repulsion = 21842.707539 eV Total energy + Delta-G solvation = -3856.513428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75542 -39.40418 -38.24815 -36.20374 -35.59383 -34.23141 -32.42772 -30.92762 -29.16397 -28.98869 -27.44716 -27.34971 -25.47999 -23.85044 -21.64961 -20.84182 -20.51909 -19.50661 -18.07381 -17.79858 -17.47968 -16.69665 -16.32697 -16.18899 -15.53006 -15.05777 -14.80660 -14.78775 -14.65588 -14.33097 -14.04416 -13.89814 -13.52342 -13.38134 -13.13159 -12.91913 -12.68069 -12.57804 -12.44058 -12.38393 -12.22241 -11.84165 -11.45114 -11.21228 -11.10485 -11.06225 -11.02644 -10.99900 -10.84046 -10.75007 -9.98470 -9.82328 -9.49209 -9.19606 -9.06375 -8.91379 -8.24249 -6.50319 -6.21578 -3.92357 2.35248 2.45266 2.95293 3.01317 3.22527 3.26727 3.30755 3.56956 3.66470 3.93236 4.16647 4.20103 4.36927 4.44771 4.45168 4.55661 4.81392 4.90769 4.92656 5.04909 5.10054 5.12047 5.13707 5.18627 5.27382 5.30536 5.36173 5.56659 5.57622 5.63553 5.66612 5.75309 5.82324 5.85799 5.87694 6.03400 6.11307 6.15442 6.46833 7.09541 7.16162 7.56871 7.59883 7.88384 8.35087 8.52011 9.23638 10.85820 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.002102 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.953928 B =13316.521172 C =14029.188066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.131 4.131 5 C 0.528 3.472 6 O -0.527 6.527 7 N -0.618 5.618 8 C 0.073 3.927 9 C 0.086 3.914 10 H 0.082 0.918 11 O -0.545 6.545 12 C 0.146 3.854 13 H 0.114 0.886 14 N -0.727 5.727 15 C 0.535 3.465 16 O -0.510 6.510 17 C -0.153 4.153 18 S -0.058 6.058 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.095 3.905 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.382 0.618 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.128 10.563 6.054 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 C -0.211 4.211 4 C -0.171 4.171 5 C 0.317 3.683 6 O -0.403 6.403 7 N -0.354 5.354 8 C -0.051 4.051 9 C 0.026 3.974 10 H 0.099 0.901 11 O -0.350 6.350 12 C 0.039 3.961 13 H 0.132 0.868 14 N -0.381 5.381 15 C 0.322 3.678 16 O -0.383 6.383 17 C -0.303 4.303 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.029 4.029 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.235 0.765 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.490 9.578 3.143 29.280 hybrid contribution 0.711 1.178 2.868 3.181 sum -26.779 10.756 6.011 29.478 Atomic orbital electron populations 1.21856 0.94837 1.01751 1.02012 1.20895 0.95135 0.96994 0.97174 1.21966 1.03207 0.94896 1.01045 1.21770 0.91346 1.02990 1.01009 1.20477 0.89989 0.76980 0.80812 1.90717 1.70335 1.46909 1.32337 1.48331 1.07766 1.58499 1.20837 1.22749 0.96986 0.98516 0.86897 1.23046 0.93372 0.86456 0.94555 0.90053 1.86680 1.59516 1.29085 1.59736 1.21903 0.81848 0.99851 0.92515 0.86795 1.45813 1.07204 1.59994 1.25118 1.20386 0.85359 0.76955 0.85136 1.90725 1.84668 1.41747 1.21200 1.23526 0.95905 1.06003 1.04908 1.85442 0.99288 1.70874 1.27585 1.22862 0.94456 1.42202 1.08904 0.90899 1.25002 0.98709 0.94512 0.95399 1.70021 1.26785 1.34094 1.19315 0.86160 0.81048 0.78645 0.79589 1.20275 1.20750 1.19707 1.22700 0.80387 0.97605 1.02189 0.92696 0.92281 0.92645 0.90250 0.92829 0.93427 0.90686 0.88888 0.89009 0.89920 0.90591 0.77076 0.76494 0.89044 0.89069 0.92164 0.90668 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16 2 C -0.08 -0.64 2.57 -90.62 -0.23 -0.87 16 3 C -0.15 -1.30 8.93 37.16 0.33 -0.97 16 4 C -0.13 -0.91 4.37 -27.88 -0.12 -1.03 16 5 C 0.53 5.74 7.57 -10.99 -0.08 5.65 16 6 O -0.53 -7.88 14.22 5.56 0.08 -7.80 16 7 N -0.62 -6.00 3.33 -170.47 -0.57 -6.57 16 8 C 0.07 0.43 6.27 -3.06 -0.02 0.42 16 9 C 0.09 0.61 3.96 -24.90 -0.10 0.51 16 10 H 0.08 0.41 8.00 -51.93 -0.42 -0.01 16 11 O -0.55 -4.07 13.40 -35.23 -0.47 -4.54 16 12 C 0.15 1.68 3.09 -65.77 -0.20 1.48 16 13 H 0.11 1.66 7.64 -51.93 -0.40 1.27 16 14 N -0.73 -9.23 5.21 -51.72 -0.27 -9.50 16 15 C 0.54 9.79 7.85 -10.99 -0.09 9.71 16 16 O -0.51 -11.53 15.55 5.56 0.09 -11.45 16 17 C -0.15 -3.03 6.16 36.00 0.22 -2.80 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.10 1.12 6.60 -2.49 -0.02 1.11 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.75 7.95 -51.93 -0.41 0.33 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.83 5.95 -51.93 -0.31 0.53 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.38 0.87 9.12 45.56 0.42 1.28 16 40 H 0.40 3.76 8.54 -40.82 -0.35 3.41 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.41 8.04 -51.92 -0.42 0.99 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -37.92 386.90 -8.08 -46.00 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.50 Total: 1.15 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 0.23 Total: -0.22 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.10 Total: -41.57 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.31 Total: -23.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.92 -8.08 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489293713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.048 kcal (2) G-P(sol) polarization free energy of solvation -37.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds