Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 H 1.08998 * 109.47339 * 55.00128 * 3 2 1 5 5 C 1.52996 * 109.47423 * 294.99877 * 3 2 1 6 6 C 1.50708 * 109.46848 * 175.00032 * 3 2 1 7 7 O 1.21278 * 120.00006 * 34.77399 * 6 3 2 8 8 N 1.34779 * 119.99848 * 214.77666 * 6 3 2 9 9 C 1.47422 * 125.64911 * 174.88699 * 8 6 3 10 10 C 1.54911 * 104.83375 * 204.09068 * 9 8 6 11 11 H 1.08997 * 111.00245 * 81.06526 * 10 9 8 12 12 N 1.46500 * 111.00237 * 204.91506 * 10 9 8 13 13 C 1.34777 * 120.00027 * 267.19528 * 12 10 9 14 14 O 1.21283 * 120.00093 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00058 * 180.02562 * 13 12 10 16 16 S 1.81002 * 109.47390 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00237 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99500 * 359.97438 * 17 16 15 19 19 C 1.38790 * 119.99829 * 180.02562 * 17 16 15 20 20 N 1.31635 * 120.00104 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00251 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47170 * 90.00207 * 21 19 17 23 23 H 1.48504 * 109.47023 * 209.99723 * 21 19 17 24 24 H 1.48501 * 109.47052 * 329.99859 * 21 19 17 25 25 C 1.55154 * 101.57891 * 322.99195 * 10 9 8 26 26 H 1.09000 * 110.86896 * 153.93954 * 25 10 9 27 27 O 1.42905 * 110.71688 * 277.13313 * 25 10 9 28 28 C 1.47027 * 125.64744 * 354.84479 * 8 6 3 29 29 H 1.09009 * 109.46950 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.47242 * 59.99805 * 1 2 3 31 31 H 1.09001 * 109.47293 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47237 * 240.00072 * 2 1 3 33 33 H 1.09005 * 109.47285 * 119.99707 * 2 1 3 34 34 H 1.08997 * 109.46832 * 65.30842 * 5 3 2 35 35 H 1.08996 * 109.47317 * 185.30639 * 5 3 2 36 36 H 1.09003 * 109.46921 * 305.30829 * 5 3 2 37 37 H 1.09005 * 110.36595 * 322.93035 * 9 8 6 38 38 H 1.09002 * 110.36703 * 85.13952 * 9 8 6 39 39 H 0.96999 * 119.99995 * 87.19953 * 12 10 9 40 40 H 1.09000 * 109.46798 * 299.99879 * 15 13 12 41 41 H 1.09000 * 109.47150 * 59.99451 * 15 13 12 42 42 H 0.96998 * 120.00353 * 179.97438 * 20 19 17 43 43 H 0.96705 * 113.99440 * 174.97925 * 27 25 10 44 44 H 1.08992 * 109.88070 * 59.55948 * 28 8 6 45 45 H 1.09003 * 109.87877 * 298.39077 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1945 0.5652 -0.3980 8 7 4.1600 2.4228 0.8146 9 6 5.6039 2.4897 1.1042 10 6 5.7137 3.3747 2.3709 11 1 5.5061 2.7960 3.2710 12 7 7.0292 4.0144 2.4522 13 6 8.0252 3.4220 3.1403 14 8 7.8326 2.3592 3.6919 15 6 9.3782 4.0802 3.2243 16 16 10.4914 3.0478 4.2097 17 6 11.9549 4.0267 4.1443 18 1 11.9564 4.9599 3.6007 19 6 13.1060 3.5980 4.7905 20 7 14.1995 4.3291 4.7412 21 14 13.1035 1.9835 5.7300 22 1 13.5022 0.8802 4.8195 23 1 14.0654 2.0660 6.8585 24 1 11.7410 1.7209 6.2591 25 6 4.5998 4.4241 2.1152 26 1 4.2262 4.8307 3.0550 27 8 5.0766 5.4711 1.2676 28 6 3.5059 3.6006 1.4033 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5494 2.2096 -1.3528 35 1 2.0778 3.1218 -1.3488 36 1 1.9902 1.5356 -2.1516 37 1 5.9977 1.4928 1.3026 38 1 6.1370 2.9485 0.2715 39 1 7.1833 4.8642 2.0108 40 1 9.7866 4.2005 2.2209 41 1 9.2779 5.0581 3.6954 42 1 15.0039 4.0297 5.1931 43 1 4.3981 6.1120 1.0145 44 1 2.7519 3.2843 2.1240 45 1 3.0435 4.1989 0.6182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489558205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -127.923028 kcal Electronic energy + Delta-G solvation = -25975.893336 eV Core-core repulsion = 22119.385263 eV Total energy + Delta-G solvation = -3856.508073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86535 -39.48484 -38.32021 -35.92710 -35.60124 -34.20551 -32.43004 -31.01287 -30.01825 -29.31282 -28.12169 -25.81880 -25.58121 -23.99632 -21.88121 -21.29212 -20.48068 -19.44771 -18.18849 -17.85920 -17.60996 -16.42174 -16.33417 -15.96621 -15.46682 -15.36446 -15.17598 -14.95280 -14.64716 -14.27419 -14.20490 -13.83319 -13.72447 -13.48206 -13.26802 -12.81384 -12.77831 -12.63721 -12.61463 -12.28562 -12.12122 -11.99907 -11.82041 -11.51615 -11.25973 -11.22342 -11.11568 -10.99948 -10.80126 -10.59833 -9.97934 -9.85393 -9.60102 -9.17363 -8.99610 -8.93493 -8.49910 -6.91327 -6.28034 -3.99914 2.31790 2.42776 2.79329 2.88703 3.25268 3.34647 3.51010 3.52683 3.68684 3.91640 3.98332 4.27438 4.33948 4.37386 4.46854 4.54330 4.72821 4.77601 4.84410 4.91763 4.94872 4.99172 5.03409 5.10981 5.12525 5.24129 5.32569 5.35670 5.41560 5.56263 5.61633 5.65811 5.73869 5.76966 5.80384 5.83494 5.94274 6.02316 6.42682 7.07022 7.13068 7.59648 7.85968 7.95031 8.42457 8.43192 9.18069 10.81134 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002261 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.422927 B =12381.627602 C =13083.219408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.105 4.105 4 H 0.088 0.912 5 C -0.141 4.141 6 C 0.532 3.468 7 O -0.532 6.532 8 N -0.616 5.616 9 C 0.095 3.905 10 C 0.147 3.853 11 H 0.117 0.883 12 N -0.718 5.718 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.123 4.123 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.089 0.911 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.085 3.915 26 H 0.089 0.911 27 O -0.553 6.553 28 C 0.072 3.928 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.411 0.589 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.271 0.729 43 H 0.385 0.615 44 H 0.081 0.919 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.233 1.770 -9.465 32.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.107 0.893 5 C -0.198 4.198 6 C 0.321 3.679 7 O -0.407 6.407 8 N -0.352 5.352 9 C -0.029 4.029 10 C 0.040 3.960 11 H 0.135 0.865 12 N -0.373 5.373 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.274 4.274 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.025 3.975 26 H 0.107 0.893 27 O -0.359 6.359 28 C -0.052 4.052 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.248 0.752 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.234 0.766 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -30.470 -0.836 -8.749 31.712 hybrid contribution 0.055 1.481 -0.484 1.559 sum -30.415 0.645 -9.234 31.792 Atomic orbital electron populations 1.21818 0.95135 1.02084 1.01880 1.21417 0.95800 0.93970 1.03573 1.21329 0.91185 0.99478 1.00650 0.89343 1.21752 1.02008 1.00272 0.95789 1.20454 0.90105 0.80097 0.77240 1.90733 1.67346 1.36686 1.45979 1.48363 1.08862 1.22959 1.54984 1.22689 0.81095 1.01831 0.97253 1.22041 0.82773 0.92429 0.98804 0.86537 1.45650 1.09948 1.26086 1.55613 1.20400 0.85523 0.85054 0.77198 1.90711 1.82247 1.21533 1.44752 1.23263 0.94608 1.03837 1.05646 1.84792 1.08013 1.32077 1.66618 1.22312 0.95172 1.09825 1.39555 0.89340 1.24715 0.94248 0.97306 0.95078 1.69939 1.01454 1.37940 1.42330 0.86733 0.80752 0.83744 0.80598 1.19198 1.19956 1.15936 1.23109 0.93313 0.87973 0.93111 0.89290 1.86454 1.40440 1.39420 1.69593 1.22867 0.96400 0.87853 0.98120 0.92701 0.92342 0.92307 0.90635 0.91592 0.91081 0.92431 0.91635 0.89519 0.90545 0.75231 0.88325 0.88296 0.91948 0.76606 0.90083 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.67 37.16 0.36 -0.41 16 2 C -0.11 -0.82 4.98 -26.73 -0.13 -0.95 16 3 C -0.10 -0.75 2.35 -91.77 -0.22 -0.97 16 4 H 0.09 0.45 6.91 -51.93 -0.36 0.09 16 5 C -0.14 -0.81 8.80 37.16 0.33 -0.48 16 6 C 0.53 5.97 6.84 -10.98 -0.08 5.89 16 7 O -0.53 -8.37 16.67 5.56 0.09 -8.28 16 8 N -0.62 -6.03 3.33 -170.52 -0.57 -6.60 16 9 C 0.10 1.15 6.57 -2.53 -0.02 1.13 16 10 C 0.15 1.57 3.30 -65.78 -0.22 1.36 16 11 H 0.12 1.38 7.54 -51.93 -0.39 0.99 16 12 N -0.72 -9.07 5.17 -51.73 -0.27 -9.33 16 13 C 0.53 9.29 7.85 -10.99 -0.09 9.20 16 14 O -0.52 -10.93 15.50 5.55 0.09 -10.85 16 15 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 16 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 17 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 21 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 25 C 0.09 0.54 4.20 -24.90 -0.10 0.43 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 27 O -0.55 -3.31 12.15 -35.23 -0.43 -3.74 16 28 C 0.07 0.39 5.97 -3.06 -0.02 0.37 16 29 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.06 0.25 6.69 -51.93 -0.35 -0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.28 6.83 -51.93 -0.35 -0.07 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.41 4.48 7.59 -40.82 -0.31 4.17 16 40 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 41 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.39 0.58 9.09 45.56 0.41 0.99 16 44 H 0.08 0.30 7.63 -51.93 -0.40 -0.10 16 45 H 0.08 0.28 8.06 -51.93 -0.42 -0.13 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -37.41 382.30 -7.38 -44.79 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.38 Total: 1.11 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 0.26 Total: 1.38 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.06 Total: -41.80 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.25 Total: -22.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.41 -7.38 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489558205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.133 kcal (2) G-P(sol) polarization free energy of solvation -37.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds