Wall clock time and date at job start Tue Mar 31 2020 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47049 * 2 1 4 4 N 1.46499 * 109.47387 * 239.99708 * 2 1 3 5 5 C 1.36937 * 119.99837 * 84.99855 * 4 2 1 6 6 H 1.07994 * 120.00018 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99567 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00344 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99583 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47011 * 89.99977 * 9 7 5 11 11 H 1.48498 * 109.46933 * 209.99773 * 9 7 5 12 12 H 1.48496 * 109.47040 * 329.99777 * 9 7 5 13 13 C 1.53001 * 109.47098 * 119.99674 * 2 1 3 14 14 H 1.09002 * 109.52537 * 179.97438 * 13 2 1 15 15 C 1.53346 * 109.68609 * 59.75301 * 13 2 1 16 16 C 1.53034 * 109.61010 * 178.74640 * 15 13 2 17 17 C 1.53188 * 109.31404 * 61.37429 * 16 15 13 18 18 N 1.46933 * 108.77495 * 305.36890 * 17 16 15 19 19 C 1.34780 * 120.62602 * 233.63137 * 18 17 16 20 20 O 1.21284 * 119.99750 * 179.97438 * 19 18 17 21 21 C 1.50698 * 120.00162 * 359.97327 * 19 18 17 22 22 C 1.53047 * 113.14929 * 280.37242 * 21 19 18 23 23 S 1.81426 * 89.88916 * 211.85368 * 22 21 19 24 24 O 1.42097 * 112.75857 * 280.47730 * 23 22 21 25 25 O 1.42108 * 112.75245 * 136.73041 * 23 22 21 26 26 C 1.53045 * 113.15061 * 180.02562 * 21 19 18 27 27 C 1.46919 * 118.74003 * 53.60503 * 18 17 16 28 28 H 1.09006 * 109.47492 * 300.00321 * 1 2 3 29 29 H 1.09001 * 109.47399 * 60.00386 * 1 2 3 30 30 H 1.08996 * 109.47213 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00174 * 265.00582 * 4 2 1 32 32 H 0.96998 * 119.99985 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.41979 * 58.70862 * 15 13 2 34 34 H 1.09001 * 109.42242 * 298.78479 * 15 13 2 35 35 H 1.08994 * 109.50232 * 301.42239 * 16 15 13 36 36 H 1.09007 * 109.52628 * 181.33900 * 16 15 13 37 37 H 1.08994 * 109.59289 * 185.57924 * 17 16 15 38 38 H 1.09006 * 109.70904 * 65.21872 * 17 16 15 39 39 H 1.08997 * 112.49860 * 50.21447 * 21 19 18 40 40 H 1.08996 * 113.15210 * 327.11262 * 22 21 19 41 41 H 1.09001 * 113.14451 * 96.59803 * 22 21 19 42 42 H 1.09002 * 113.14744 * 263.40266 * 26 21 19 43 43 H 1.09004 * 113.15005 * 32.88288 * 26 21 19 44 44 H 1.09002 * 109.58751 * 66.18300 * 27 18 17 45 45 H 1.08996 * 109.58750 * 186.46484 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4241 7 6 2.6114 -0.6622 -3.5092 8 7 2.9235 -1.9394 -3.4502 9 14 2.7905 0.2699 -5.1181 10 1 4.1531 0.8540 -5.2028 11 1 2.5795 -0.6612 -6.2556 12 1 1.7812 1.3576 -5.1750 13 6 2.0399 -0.7212 1.2493 14 1 3.1300 -0.7221 1.2500 15 6 1.5264 -2.1661 1.2575 16 6 2.0630 -2.8949 2.4915 17 6 1.5533 -2.1946 3.7550 18 7 1.9181 -0.7729 3.6876 19 6 2.5968 -0.1897 4.6955 20 8 2.8925 0.9846 4.6277 21 6 2.9881 -0.9966 5.9066 22 6 1.8391 -1.1873 6.8995 23 16 3.0291 -1.1984 8.2690 24 8 3.6843 -2.4505 8.4177 25 8 2.5935 -0.4295 9.3818 26 6 3.7510 -0.1804 6.9526 27 6 1.5296 0.0006 2.5005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2490 -1.6318 -1.1525 32 1 3.2469 -2.3967 -4.2422 33 1 1.8675 -2.6770 0.3571 34 1 0.4367 -2.1633 1.2827 35 1 3.1527 -2.8764 2.4798 36 1 1.7166 -3.9284 2.4835 37 1 2.0111 -2.6480 4.6341 38 1 0.4693 -2.2910 3.8168 39 1 3.4869 -1.9292 5.6431 40 1 1.1559 -0.3387 6.9324 41 1 1.3193 -2.1373 6.7758 42 1 4.8329 -0.2868 6.8735 43 1 3.4361 0.8623 6.9957 44 1 0.4436 0.0830 2.4574 45 1 1.9698 0.9963 2.5530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496431070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:29 Heat of formation + Delta-G solvation = -69.222438 kcal Electronic energy + Delta-G solvation = -26984.813618 eV Core-core repulsion = 23130.850993 eV Total energy + Delta-G solvation = -3853.962625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.67526 -38.37452 -37.79207 -36.60168 -36.09548 -35.55408 -32.85183 -31.99889 -30.11087 -27.92263 -27.15315 -26.23738 -24.63148 -23.89397 -22.64754 -21.55848 -19.34531 -19.29592 -18.66793 -17.96107 -17.20078 -16.99780 -16.77399 -16.34256 -15.73912 -15.52170 -14.78249 -14.57776 -14.45790 -14.20616 -13.98321 -13.86688 -13.60436 -13.08336 -12.97476 -12.82826 -12.72330 -12.70000 -12.49183 -12.29942 -12.14656 -12.01726 -11.48899 -11.39779 -11.19565 -10.99132 -10.86652 -10.84589 -10.71043 -10.58735 -10.31543 -10.10284 -9.99776 -9.69436 -9.66020 -8.92641 -8.66592 -6.98052 -5.78871 -3.06950 -0.36767 1.44654 2.34204 2.76274 3.17431 3.42188 3.47737 3.48848 3.55429 3.64005 4.03724 4.35302 4.37325 4.57131 4.65336 4.70542 4.85975 4.90586 4.98829 5.14452 5.20830 5.28772 5.39752 5.43310 5.50903 5.56970 5.73507 5.79956 5.83423 5.94310 5.97015 6.12863 6.19841 6.34009 6.39904 6.48989 6.64434 6.70250 6.86979 7.10149 7.24695 7.69185 7.96421 8.40480 9.51726 10.09257 10.43877 11.44016 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.030329 B = 0.002390 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.989317 B =11714.269220 C =11876.284057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.723 5.723 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.137 4.137 17 C 0.104 3.896 18 N -0.602 5.602 19 C 0.538 3.462 20 O -0.533 6.533 21 C -0.097 4.097 22 C -0.594 4.594 23 S 2.416 3.584 24 O -0.910 6.910 25 O -0.921 6.921 26 C -0.579 4.579 27 C 0.114 3.886 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.149 0.851 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.155 0.845 44 H 0.074 0.926 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -2.373 23.685 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.066 0.934 4 N -0.365 5.365 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.153 4.153 16 C -0.175 4.175 17 C -0.019 4.019 18 N -0.334 5.334 19 C 0.323 3.677 20 O -0.410 6.410 21 C -0.120 4.120 22 C -0.722 4.722 23 S 2.596 3.404 24 O -0.907 6.907 25 O -0.918 6.918 26 C -0.707 4.707 27 C -0.008 4.008 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.219 0.781 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.173 0.827 44 H 0.092 0.908 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.756 -2.048 24.620 24.859 hybrid contribution -0.015 0.378 -2.274 2.305 sum -2.770 -1.670 22.346 22.579 Atomic orbital electron populations 1.22570 0.99450 1.00942 0.99891 1.20110 0.91813 0.95270 0.85889 0.93438 1.42456 1.78158 1.10701 1.05175 1.19251 1.36318 0.93876 0.87318 0.91221 1.24720 1.02261 0.95981 0.98046 1.69649 1.51125 1.08637 1.28903 0.86205 0.77802 0.78597 0.83691 1.21768 1.21825 1.20800 1.21822 1.00943 0.95315 0.94202 0.90851 1.21638 1.00621 0.95332 0.97672 1.21959 1.01575 0.99310 0.94653 1.21864 1.00563 0.80273 0.99180 1.48094 1.55403 1.11116 1.18768 1.19627 0.77728 0.87304 0.83063 1.90714 1.54583 1.16121 1.79542 1.21592 0.95349 1.00640 0.94416 1.31008 1.12726 1.11820 1.16607 1.08285 0.79666 0.76597 0.75814 1.93736 1.71095 1.38930 1.86983 1.93662 1.78659 1.70321 1.49153 1.30872 1.11466 1.14658 1.13738 1.21878 1.00071 0.95917 0.82927 0.94423 0.92875 0.93149 0.78131 0.93559 0.90371 0.91609 0.91428 0.90656 0.90145 0.90963 0.84637 0.83254 0.84862 0.85111 0.82667 0.90808 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.80 37.15 0.33 -2.52 16 2 C 0.18 3.39 2.72 -67.93 -0.19 3.20 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.72 -17.39 5.04 -53.43 -0.27 -17.66 16 5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 9 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C -0.10 -1.58 2.34 -90.34 -0.21 -1.79 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.58 4.64 -26.53 -0.12 -1.70 16 16 C -0.14 -1.41 6.08 -26.62 -0.16 -1.57 16 17 C 0.10 0.88 6.26 -3.71 -0.02 0.86 16 18 N -0.60 -6.75 2.97 -172.77 -0.51 -7.26 16 19 C 0.54 6.23 7.20 -10.98 -0.08 6.15 16 20 O -0.53 -8.18 15.36 5.55 0.09 -8.10 16 21 C -0.10 -0.69 2.47 -91.73 -0.23 -0.92 16 22 C -0.59 -2.71 7.15 37.18 0.27 -2.44 16 23 S 2.42 12.83 7.55 -107.50 -0.81 12.02 16 24 O -0.91 -7.42 18.18 -57.30 -1.04 -8.47 16 25 O -0.92 -8.16 18.18 -57.30 -1.04 -9.20 16 26 C -0.58 -3.52 7.18 37.18 0.27 -3.26 16 27 C 0.11 1.52 5.49 -3.71 -0.02 1.50 16 28 H 0.04 0.53 6.32 -51.93 -0.33 0.20 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 31 H 0.38 9.69 6.08 -40.82 -0.25 9.44 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.08 1.29 6.50 -51.93 -0.34 0.96 16 34 H 0.07 0.86 6.52 -51.93 -0.34 0.52 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.08 0.46 5.44 -51.93 -0.28 0.18 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.14 0.69 7.27 -51.93 -0.38 0.32 16 40 H 0.15 0.66 8.11 -51.93 -0.42 0.24 16 41 H 0.13 0.30 7.93 -51.93 -0.41 -0.12 16 42 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.16 1.07 7.57 -51.93 -0.39 0.68 16 44 H 0.07 0.91 6.18 -51.93 -0.32 0.59 16 45 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -37.21 361.41 -9.52 -46.73 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.66 Total: 5.84 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -0.42 Total: -9.58 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.06 Total: -51.93 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -2.00 Total: -25.76 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 12.83 SS G_CDS: -0.81 Total: 12.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.21 -9.52 -46.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496431070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.491 kcal (2) G-P(sol) polarization free energy of solvation -37.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds