Wall clock time and date at job start Tue Mar 31 2020 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47217 * 2 1 4 4 S 1.81400 * 109.47328 * 120.00419 * 2 1 3 5 5 O 1.42101 * 108.57453 * 305.51006 * 4 2 1 6 6 O 1.42095 * 108.57786 * 174.48564 * 4 2 1 7 7 C 1.81401 * 101.92191 * 59.99645 * 4 2 1 8 8 C 1.50704 * 109.46877 * 180.02562 * 7 4 2 9 9 O 1.21278 * 119.99954 * 359.97438 * 8 7 4 10 10 N 1.34774 * 119.99856 * 180.02562 * 8 7 4 11 11 C 1.46776 * 125.33922 * 180.02562 * 10 8 7 12 12 C 1.53967 * 106.62681 * 198.49320 * 11 10 8 13 13 H 1.09005 * 113.01221 * 94.28380 * 12 11 10 14 14 C 1.53931 * 109.25084 * 221.80967 * 12 11 10 15 15 N 1.46044 * 107.07602 * 82.51420 * 14 12 11 16 16 C 1.36936 * 125.23958 * 198.01461 * 15 14 12 17 17 H 1.07994 * 120.00118 * 179.32756 * 16 15 14 18 18 C 1.38817 * 119.99504 * 359.32392 * 16 15 14 19 19 N 1.31615 * 120.00022 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99778 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47221 * 59.99871 * 20 18 16 22 22 H 1.48496 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46728 * 299.99871 * 20 18 16 24 24 C 1.46644 * 109.43258 * 17.43170 * 15 14 12 25 25 C 1.53693 * 108.00744 * 359.74435 * 24 15 14 26 26 H 1.08999 * 112.56222 * 105.91167 * 25 24 15 27 27 C 1.46666 * 125.33817 * 359.97054 * 10 8 7 28 28 H 1.08993 * 109.47110 * 59.99618 * 1 2 3 29 29 H 1.08998 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46736 * 299.99925 * 1 2 3 31 31 H 1.09002 * 109.46736 * 240.00075 * 2 1 3 32 32 H 1.09000 * 109.47143 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47361 * 300.00151 * 3 2 1 34 34 H 1.09002 * 109.47207 * 60.00363 * 3 2 1 35 35 H 1.08997 * 109.47075 * 60.00201 * 7 4 2 36 36 H 1.08999 * 109.46951 * 299.99976 * 7 4 2 37 37 H 1.09001 * 110.02904 * 79.20269 * 11 10 8 38 38 H 1.09002 * 110.02393 * 317.78937 * 11 10 8 39 39 H 1.09000 * 110.00753 * 200.95229 * 14 12 11 40 40 H 1.09002 * 110.01148 * 322.32489 * 14 12 11 41 41 H 0.97009 * 119.99826 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.75787 * 240.11000 * 24 15 14 43 43 H 1.08995 * 109.76195 * 119.38126 * 24 15 14 44 44 H 1.09005 * 109.77152 * 59.86015 * 27 10 8 45 45 H 1.09002 * 109.77945 * 299.10127 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1348 -0.8552 1.4810 5 8 1.5480 -0.2495 2.6248 6 8 3.5497 -0.9572 1.3989 7 6 1.4229 -2.5109 1.2746 8 6 1.8271 -3.3800 2.4375 9 8 2.5269 -2.9272 3.3185 10 7 1.4118 -4.6607 2.4980 11 6 1.7336 -5.6078 3.5722 12 6 1.4665 -7.0168 3.0119 13 1 2.3581 -7.4860 2.5959 14 6 0.7678 -7.8670 4.0883 15 7 -0.6551 -7.5426 4.0341 16 6 -1.5628 -7.8016 5.0261 17 1 -2.5964 -7.5146 4.9007 18 6 -1.1544 -8.4330 6.1930 19 7 0.1053 -8.7823 6.3459 20 14 -2.3928 -8.7870 7.5460 21 1 -3.4650 -9.6681 7.0176 22 1 -1.7094 -9.4624 8.6782 23 1 -2.9883 -7.5111 8.0180 24 6 -0.9573 -6.8845 2.7590 25 6 0.3499 -6.7783 1.9576 26 1 0.3925 -7.4875 1.1310 27 6 0.5665 -5.3264 1.5012 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.7893 -2.9509 0.3471 36 1 0.3361 -2.4370 1.2372 37 1 1.0958 -5.4227 4.4365 38 1 2.7821 -5.5105 3.8539 39 1 0.9007 -8.9267 3.8708 40 1 1.1765 -7.6335 5.0714 41 1 0.3907 -9.2233 7.1615 42 1 -1.3578 -5.8878 2.9445 43 1 -1.6839 -7.4760 2.2020 44 1 1.0625 -5.3153 0.5306 45 1 -0.3934 -4.8147 1.4308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699994494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:54 Heat of formation + Delta-G solvation = -71.453621 kcal Electronic energy + Delta-G solvation = -27260.484282 eV Core-core repulsion = 23406.424906 eV Total energy + Delta-G solvation = -3854.059376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.35800 -38.45290 -37.15152 -36.14437 -35.50793 -35.13710 -32.47338 -31.20334 -29.94679 -29.55839 -27.74285 -25.58296 -25.47472 -23.27590 -22.87025 -20.18758 -19.67554 -19.52547 -18.81310 -17.79937 -17.14315 -16.71495 -16.41647 -16.23658 -15.87311 -15.14524 -14.88024 -14.76562 -14.69240 -13.78483 -13.75350 -13.57133 -13.43502 -13.18190 -12.97327 -12.81178 -12.52203 -12.17200 -12.13610 -12.09807 -12.04554 -11.91895 -11.88075 -11.61922 -11.55633 -11.25631 -11.01590 -10.83439 -10.55981 -10.48625 -10.22223 -10.11281 -10.07314 -9.91921 -9.69048 -8.66399 -8.55431 -6.90036 -5.74002 -3.13073 -0.36249 2.42875 2.48978 2.84206 3.38367 3.42944 3.44213 3.53588 3.68879 4.07137 4.13029 4.19472 4.43548 4.57468 4.63992 4.67515 4.78625 4.95256 4.99595 5.06879 5.09116 5.14269 5.26878 5.38064 5.45081 5.54346 5.55286 5.56468 5.64381 5.74257 5.81913 6.07061 6.22657 6.28783 6.35856 6.56037 6.65248 6.72060 7.37208 7.49816 7.56825 7.76570 7.95654 8.26811 9.17629 9.77322 10.39082 11.32662 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.002818 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.307863 B = 9933.969070 C =10048.081250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.583 4.583 3 C -0.142 4.142 4 S 2.451 3.549 5 O -0.915 6.915 6 O -0.921 6.921 7 C -0.656 4.656 8 C 0.552 3.448 9 O -0.534 6.534 10 N -0.597 5.597 11 C 0.115 3.885 12 C -0.122 4.122 13 H 0.089 0.911 14 C 0.172 3.828 15 N -0.600 5.600 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.143 3.857 25 C -0.110 4.110 26 H 0.097 0.903 27 C 0.107 3.893 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.097 0.903 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.066 0.934 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 14.311 -18.678 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.692 4.692 3 C -0.201 4.201 4 S 2.627 3.373 5 O -0.912 6.912 6 O -0.918 6.918 7 C -0.783 4.783 8 C 0.338 3.662 9 O -0.412 6.412 10 N -0.329 5.329 11 C -0.006 4.006 12 C -0.142 4.142 13 H 0.107 0.893 14 C 0.047 3.953 15 N -0.326 5.326 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.017 3.983 25 C -0.129 4.129 26 H 0.115 0.885 27 C -0.016 4.016 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.600 14.804 -17.315 22.928 hybrid contribution -1.296 -0.727 -0.300 1.516 sum 1.304 14.076 -17.614 22.586 Atomic orbital electron populations 1.21763 0.89896 1.03732 1.05217 1.30189 1.07120 1.10246 1.21631 1.21630 1.02189 0.91512 1.04741 1.07670 0.76030 0.76551 0.77053 1.93577 1.79179 1.73616 1.44840 1.93572 1.26494 1.85278 1.86476 1.30871 1.15903 1.23892 1.07629 1.18606 0.80562 0.81477 0.85566 1.90861 1.38365 1.72242 1.39764 1.48175 1.49793 1.10012 1.24957 1.22195 1.01513 0.86832 0.90046 1.23312 0.97726 0.95530 0.97678 0.89259 1.21262 0.83323 0.94156 0.96600 1.44033 1.05174 1.69317 1.14077 1.18986 0.90091 1.32685 0.94040 0.90465 1.24803 0.96619 1.00577 0.98297 1.69850 1.14088 1.45830 1.27141 0.86150 0.79964 0.77989 0.81357 1.21174 1.21511 1.21087 1.21191 0.93223 0.96042 0.87830 1.22764 0.97622 0.93940 0.98577 0.88464 1.22017 0.94396 0.93940 0.91251 0.90098 0.91150 0.90108 0.84525 0.90718 0.89952 0.90618 0.82507 0.82326 0.89787 0.90876 0.96099 0.88545 0.93508 0.95933 0.95731 0.91600 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.94 37.16 0.33 -0.40 16 2 C -0.58 -3.60 3.31 -26.73 -0.09 -3.69 16 3 C -0.14 -0.89 9.20 37.15 0.34 -0.55 16 4 S 2.45 28.15 3.48 -107.50 -0.37 27.77 16 5 O -0.92 -14.07 17.76 -59.53 -1.06 -15.13 16 6 O -0.92 -13.92 17.95 -59.52 -1.07 -14.99 16 7 C -0.66 -6.41 5.01 36.01 0.18 -6.23 16 8 C 0.55 8.84 7.86 -10.98 -0.09 8.76 16 9 O -0.53 -10.90 15.90 2.56 0.04 -10.86 16 10 N -0.60 -9.37 3.31 -172.29 -0.57 -9.94 16 11 C 0.12 2.10 6.13 -3.39 -0.02 2.08 16 12 C -0.12 -2.13 4.17 -88.35 -0.37 -2.49 16 13 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.17 3.93 4.73 -3.80 -0.02 3.92 16 15 N -0.60 -14.56 3.36 -172.48 -0.58 -15.14 16 16 C -0.23 -6.21 10.25 -15.06 -0.15 -6.37 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 19 N -0.92 -26.27 10.17 55.49 0.56 -25.70 16 20 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.14 2.73 6.63 -3.60 -0.02 2.70 16 25 C -0.11 -1.65 3.98 -88.60 -0.35 -2.00 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 C 0.11 1.32 5.87 -3.57 -0.02 1.30 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.22 6.55 -51.93 -0.34 -0.12 16 30 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.16 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.16 1.03 6.87 -51.92 -0.36 0.67 16 37 H 0.08 1.80 7.71 -51.93 -0.40 1.40 16 38 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 2.51 6.04 -51.93 -0.31 2.20 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.02 0.44 7.33 -51.93 -0.38 0.06 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.78 7.47 -51.93 -0.39 0.39 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -37.60 368.20 -10.11 -47.71 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -7.21 Total: -2.80 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.38 Total: -3.26 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.59 Total: -50.78 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -2.08 Total: -40.98 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 28.15 SS G_CDS: -0.37 Total: 27.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.60 -10.11 -47.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699994494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.743 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds