Wall clock time and date at job start Tue Mar 31 2020 07:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47551 * 2 1 4 4 N 1.46506 * 109.47072 * 120.00056 * 2 1 3 5 5 C 1.36938 * 120.00027 * 286.05650 * 4 2 1 6 6 H 1.08004 * 119.99347 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00196 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99848 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47089 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47385 * 119.99736 * 9 7 5 12 12 H 1.48498 * 109.46829 * 239.99840 * 9 7 5 13 13 C 1.53001 * 109.46888 * 239.99622 * 2 1 3 14 14 H 1.09003 * 109.58946 * 291.26146 * 13 2 1 15 15 C 1.53192 * 109.58857 * 51.54058 * 13 2 1 16 16 C 1.53033 * 109.31513 * 174.42227 * 15 13 2 17 17 C 1.53039 * 109.54068 * 298.63625 * 16 15 13 18 18 C 1.53191 * 109.31117 * 61.36508 * 17 16 15 19 19 N 1.46925 * 109.58741 * 170.97507 * 13 2 1 20 20 C 1.34770 * 120.63135 * 6.61040 * 19 13 2 21 21 O 1.21284 * 120.00261 * 354.31039 * 20 19 13 22 22 C 1.50701 * 120.00224 * 174.31117 * 20 19 13 23 23 C 1.53045 * 113.15398 * 280.54596 * 22 20 19 24 24 S 1.81499 * 89.86498 * 211.86793 * 23 22 20 25 25 O 1.42097 * 112.71311 * 280.42877 * 24 23 22 26 26 O 1.42096 * 112.85716 * 136.68169 * 24 23 22 27 27 C 1.53049 * 113.15350 * 180.11811 * 22 20 19 28 28 H 1.09010 * 109.46567 * 303.19422 * 1 2 3 29 29 H 1.09004 * 109.46952 * 63.18572 * 1 2 3 30 30 H 1.08993 * 109.48002 * 183.19046 * 1 2 3 31 31 H 0.96997 * 119.99843 * 106.05144 * 4 2 1 32 32 H 0.96999 * 120.00425 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.50047 * 294.38044 * 15 13 2 34 34 H 1.09001 * 109.49578 * 54.47083 * 15 13 2 35 35 H 1.08999 * 109.46042 * 58.65965 * 16 15 13 36 36 H 1.09001 * 109.46200 * 178.61573 * 16 15 13 37 37 H 1.08993 * 109.50504 * 181.31654 * 17 16 15 38 38 H 1.09000 * 109.50005 * 301.38428 * 17 16 15 39 39 H 1.09002 * 109.58800 * 65.15488 * 18 17 16 40 40 H 1.09000 * 109.58877 * 185.44129 * 18 17 16 41 41 H 1.08999 * 112.49921 * 50.33292 * 22 20 19 42 42 H 1.09004 * 113.14390 * 327.11455 * 23 22 20 43 43 H 1.09003 * 113.14445 * 96.58966 * 23 22 20 44 44 H 1.08997 * 113.14449 * 263.40558 * 27 22 20 45 45 H 1.09002 * 113.14695 * 32.88428 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.9373 -0.0811 2.4198 6 1 1.5137 0.9089 2.5028 7 6 2.4004 -0.7352 3.5531 8 7 2.9170 -1.9415 3.4517 9 14 2.2906 0.0965 5.2220 10 1 1.6750 1.4389 5.0665 11 1 1.4565 -0.7285 6.1323 12 1 3.6534 0.2406 5.7939 13 6 2.0399 -0.7213 -1.2492 14 1 1.8106 -1.7845 -1.1765 15 6 1.3648 -0.1344 -2.4928 16 6 1.9792 -0.7618 -3.7461 17 6 3.4721 -0.4303 -3.8051 18 6 4.1712 -1.0207 -2.5765 19 7 3.4930 -0.5377 -1.3654 20 6 4.1897 0.0652 -0.3818 21 8 3.6066 0.5537 0.5628 22 6 5.6934 0.1323 -0.4556 23 6 6.3754 -1.1711 -0.0331 24 16 7.7832 -0.2217 0.6079 25 8 8.6765 0.1940 -0.4160 26 8 8.2376 -0.6921 1.8694 27 6 6.3234 0.8472 0.7421 28 1 -0.3633 0.5627 0.8601 29 1 -0.3633 0.4636 -0.9172 30 1 -0.3635 -1.0259 0.0572 31 1 2.3989 -1.5797 1.1215 32 1 3.2404 -2.3989 4.2437 33 1 0.2969 -0.3511 -2.4636 34 1 1.5169 0.9447 -2.5142 35 1 1.8485 -1.8434 -3.7121 36 1 1.4836 -0.3640 -4.6316 37 1 3.9043 -0.8576 -4.7099 38 1 3.6045 0.6516 -3.8147 39 1 4.1178 -2.1087 -2.6133 40 1 5.2147 -0.7062 -2.5635 41 1 6.0475 0.5098 -1.4148 42 1 5.8307 -1.7073 0.7440 43 1 6.6374 -1.8104 -0.8763 44 1 6.5419 1.8972 0.5478 45 1 5.7687 0.7007 1.6689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752147404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:19 Heat of formation + Delta-G solvation = -25.159599 kcal Electronic energy + Delta-G solvation = -28817.082451 eV Core-core repulsion = 24965.030534 eV Total energy + Delta-G solvation = -3852.051917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.36307 -37.60538 -37.20398 -36.10465 -35.84811 -34.61612 -32.57382 -32.23910 -29.91221 -27.83833 -26.56112 -25.72799 -24.28947 -23.47538 -22.54108 -20.46850 -20.03143 -18.83620 -18.75528 -17.23034 -16.61692 -16.38837 -16.18460 -15.62913 -15.33952 -15.16981 -14.77699 -14.42642 -13.94446 -13.75385 -13.61445 -13.42039 -13.10981 -12.96954 -12.80954 -12.36572 -12.20484 -12.17788 -12.16580 -12.01842 -11.65210 -11.47428 -11.36350 -11.19738 -10.91289 -10.87696 -10.77827 -10.67386 -10.63700 -10.38749 -10.24985 -10.12606 -9.71172 -9.45632 -8.71545 -8.29931 -8.03715 -6.54102 -5.53759 -2.74858 0.20011 2.00550 3.24874 3.32730 3.55358 3.61273 3.63062 3.72153 4.13526 4.30507 4.64737 4.71861 4.75766 4.85477 4.90765 4.98116 5.10637 5.18515 5.26472 5.38527 5.43499 5.48472 5.58919 5.73821 5.78394 5.82991 5.86331 5.93094 5.97308 6.06121 6.08098 6.13443 6.18691 6.33639 6.43336 6.45430 6.75842 6.91008 7.03221 7.35815 7.92309 7.93972 8.63708 8.93852 9.75808 10.31622 10.67429 11.70517 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.008094 B = 0.007432 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.405337 B = 3766.632664 C = 6748.718500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.179 3.821 3 H 0.064 0.936 4 N -0.695 5.695 5 C -0.184 4.184 6 H 0.063 0.937 7 C -0.026 4.026 8 N -0.944 5.944 9 Si 0.895 3.105 10 H -0.285 1.285 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.148 3.852 14 H 0.065 0.935 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.135 4.135 18 C 0.110 3.890 19 N -0.613 5.613 20 C 0.501 3.499 21 O -0.424 6.424 22 C -0.092 4.092 23 C -0.583 4.583 24 S 2.400 3.600 25 O -0.925 6.925 26 O -0.922 6.922 27 C -0.571 4.571 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.377 0.623 32 H 0.248 0.752 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.157 0.843 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 2.263 -17.086 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.069 3.931 3 H 0.082 0.918 4 N -0.335 5.335 5 C -0.316 4.316 6 H 0.081 0.919 7 C -0.219 4.219 8 N -0.596 5.596 9 Si 0.729 3.271 10 H -0.210 1.210 11 H -0.225 1.225 12 H -0.223 1.223 13 C 0.045 3.955 14 H 0.083 0.917 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.173 4.173 18 C -0.014 4.014 19 N -0.350 5.350 20 C 0.283 3.717 21 O -0.290 6.290 22 C -0.116 4.116 23 C -0.712 4.712 24 S 2.582 3.418 25 O -0.922 6.922 26 O -0.919 6.919 27 C -0.700 4.700 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.210 0.790 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.176 0.824 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.630 2.642 -16.129 17.287 hybrid contribution -1.017 0.009 0.573 1.167 sum 4.613 2.651 -15.556 16.441 Atomic orbital electron populations 1.22594 0.99847 1.00855 0.99739 1.20488 0.90414 0.97117 0.85055 0.91837 1.42300 1.71930 1.17456 1.01810 1.19058 1.30053 0.98271 0.84202 0.91862 1.24535 1.03207 0.97013 0.97176 1.69628 1.49065 1.13235 1.27650 0.86251 0.76987 0.78287 0.85623 1.21035 1.22527 1.22285 1.21489 0.78724 0.99607 0.95722 0.91717 1.22021 1.00027 1.00684 0.94012 1.21512 0.95273 1.00868 0.97967 1.21924 0.96294 1.01482 0.97629 1.21620 0.96426 0.98766 0.84601 1.47753 1.07506 1.61290 1.18491 1.19523 0.87109 0.82119 0.82973 1.91157 1.67463 1.40377 1.30052 1.21576 0.97712 0.93790 0.98489 1.30931 1.18865 1.08141 1.13222 1.08607 0.76862 0.80841 0.75453 1.93679 1.61235 1.79487 1.57828 1.93656 1.81574 1.77048 1.39642 1.30822 1.18699 1.13413 1.07115 0.92827 0.94393 0.93682 0.78998 0.94173 0.90597 0.91649 0.91957 0.92125 0.91247 0.91620 0.91927 0.90300 0.86148 0.82444 0.85851 0.85939 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.85 37.16 0.33 -2.73 16 2 C 0.18 3.51 1.80 -67.93 -0.12 3.38 16 3 H 0.06 1.38 6.34 -51.93 -0.33 1.05 16 4 N -0.69 -16.94 3.16 -53.43 -0.17 -17.11 16 5 C -0.18 -5.11 8.30 -15.06 -0.13 -5.23 16 6 H 0.06 1.79 7.83 -52.48 -0.41 1.38 16 7 C -0.03 -0.75 5.50 -17.43 -0.10 -0.85 16 8 N -0.94 -28.58 13.06 55.49 0.72 -27.86 16 9 Si 0.90 23.35 29.55 -169.99 -5.02 18.32 16 10 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 13 C 0.15 2.30 2.57 -67.60 -0.17 2.12 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.13 -1.55 4.56 -26.61 -0.12 -1.67 16 16 C -0.12 -1.13 5.88 -26.69 -0.16 -1.29 16 17 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 18 C 0.11 1.14 6.30 -3.69 -0.02 1.12 16 19 N -0.61 -8.85 2.98 -165.19 -0.49 -9.35 16 20 C 0.50 8.43 6.88 -10.99 -0.08 8.36 16 21 O -0.42 -9.16 8.90 5.55 0.05 -9.11 16 22 C -0.09 -1.18 2.51 -91.72 -0.23 -1.41 16 23 C -0.58 -6.83 7.45 37.18 0.28 -6.55 16 24 S 2.40 28.43 7.55 -107.50 -0.81 27.62 16 25 O -0.93 -12.13 18.18 -57.31 -1.04 -13.17 16 26 O -0.92 -14.90 18.18 -57.31 -1.04 -15.94 16 27 C -0.57 -7.43 7.18 37.18 0.27 -7.16 16 28 H 0.05 1.06 8.07 -51.92 -0.42 0.64 16 29 H 0.04 0.56 6.26 -51.93 -0.32 0.23 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.38 9.90 7.71 -40.82 -0.31 9.59 16 32 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 0.88 6.62 -51.93 -0.34 0.53 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.68 5.75 -51.93 -0.30 0.38 16 41 H 0.12 1.15 7.03 -51.93 -0.36 0.78 16 42 H 0.16 2.29 8.11 -51.93 -0.42 1.87 16 43 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.16 2.69 7.58 -51.93 -0.39 2.30 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -36.90 357.77 -9.81 -46.71 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.98 Total: 7.76 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.41 Total: -13.27 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.06 Total: -54.31 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.03 Total: -38.23 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Atomic # 16 Polarization: 28.43 SS G_CDS: -0.81 Total: 27.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.90 -9.81 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752147404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.553 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds