Wall clock time and date at job start Tue Mar 31 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.50697 * 109.47319 * 120.00047 * 2 1 3 5 5 O 1.21282 * 119.99969 * 119.99757 * 4 2 1 6 6 N 1.34777 * 120.00014 * 300.00171 * 4 2 1 7 7 C 1.46493 * 119.99889 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47389 * 179.97438 * 7 6 4 9 9 H 1.09012 * 109.46798 * 65.00067 * 8 7 6 10 10 C 1.52999 * 109.47754 * 185.00029 * 8 7 6 11 11 O 1.42896 * 109.46778 * 54.99845 * 10 8 7 12 12 N 1.46493 * 109.47132 * 305.00549 * 8 7 6 13 13 C 1.34773 * 120.00567 * 154.99749 * 12 8 7 14 14 O 1.21287 * 119.99435 * 359.97438 * 13 12 8 15 15 C 1.50701 * 120.00485 * 179.97438 * 13 12 8 16 16 S 1.81006 * 109.47064 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99840 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99835 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00034 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99866 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99778 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46963 * 89.99989 * 21 19 17 23 23 H 1.48501 * 109.47092 * 209.99890 * 21 19 17 24 24 H 1.48496 * 109.47237 * 329.99683 * 21 19 17 25 25 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 26 26 C 1.53000 * 117.49997 * 179.97438 * 25 2 1 27 27 C 1.53002 * 60.02940 * 252.49592 * 26 25 2 28 28 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 31 31 H 0.96996 * 120.00040 * 359.97438 * 6 4 2 32 32 H 1.08998 * 109.47441 * 300.00143 * 7 6 4 33 33 H 1.09008 * 109.47467 * 60.00134 * 7 6 4 34 34 H 1.08991 * 109.47520 * 174.99960 * 10 8 7 35 35 H 1.09003 * 109.47197 * 295.00751 * 10 8 7 36 36 H 0.96706 * 114.00294 * 179.97438 * 11 10 8 37 37 H 0.97003 * 120.00086 * 334.99630 * 12 8 7 38 38 H 1.08995 * 109.47209 * 300.00163 * 15 13 12 39 39 H 1.09000 * 109.47006 * 60.00389 * 15 13 12 40 40 H 0.96997 * 120.00205 * 179.97438 * 20 19 17 41 41 H 1.09008 * 115.56055 * 325.68508 * 25 2 1 42 42 H 1.09002 * 117.49833 * 359.97438 * 26 25 2 43 43 H 1.09002 * 117.49953 * 144.99738 * 26 25 2 44 44 H 1.09000 * 117.49996 * 107.50493 * 27 26 25 45 45 H 1.08999 * 117.49664 * 252.51862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1946 -0.9409 3.6506 8 6 1.6853 -0.2193 4.9000 9 1 0.5988 -0.2955 4.9459 10 6 2.2950 -0.8647 6.1460 11 8 3.7193 -0.8692 6.0315 12 7 2.0738 1.1920 4.8412 13 6 1.3584 2.1164 5.5121 14 8 0.3926 1.7799 6.1640 15 6 1.7583 3.5681 5.4521 16 16 0.6104 4.5518 6.4476 17 6 1.2944 6.1575 6.2058 18 1 2.1701 6.2838 5.5864 19 6 0.7072 7.2603 6.8105 20 7 1.2179 8.4599 6.6295 21 14 -0.8078 7.0419 7.8812 22 1 -0.3907 6.8048 9.2865 23 1 -1.6432 8.2678 7.8129 24 1 -1.5940 5.8796 7.3953 25 6 2.0399 -0.7211 -1.2493 26 6 3.5550 -0.8274 -1.4346 27 6 2.7419 0.1229 -2.3160 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.1494 0.5389 2.5436 32 1 1.8310 -1.9684 3.6505 33 1 3.2847 -0.9413 3.6508 34 1 2.0032 -0.2965 7.0292 35 1 1.9347 -1.8893 6.2377 36 1 4.1735 -1.2643 6.7884 37 1 2.8460 1.4612 4.3195 38 1 2.7693 3.6829 5.8430 39 1 1.7276 3.9110 4.4179 40 1 0.8073 9.2306 7.0517 41 1 1.4309 -1.5583 -1.5906 42 1 4.1883 -0.3832 -0.6668 43 1 3.9430 -1.7349 -1.8974 44 1 2.8404 1.1920 -2.1278 45 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756510461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:01 Heat of formation + Delta-G solvation = -109.552346 kcal Electronic energy + Delta-G solvation = -25910.079825 eV Core-core repulsion = 22054.368364 eV Total energy + Delta-G solvation = -3855.711461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.45678 -39.60269 -37.62952 -37.11078 -35.48289 -33.85125 -32.59585 -32.47574 -30.82352 -28.54246 -26.31423 -25.65142 -24.76457 -22.55213 -22.02060 -21.57823 -20.48417 -19.97784 -18.10463 -17.72364 -17.39631 -16.71771 -16.45624 -15.97629 -15.57564 -15.33093 -15.10464 -14.97292 -14.76504 -14.44297 -14.00490 -13.87318 -13.82853 -13.38837 -13.06064 -12.84801 -12.81711 -12.56891 -12.46542 -12.07178 -11.89830 -11.74575 -11.61134 -11.32563 -11.30929 -11.04977 -10.66779 -10.65754 -10.32707 -10.31049 -9.89917 -9.80582 -9.63194 -9.29255 -9.14869 -9.03684 -8.55694 -6.96879 -6.32677 -4.04982 2.45892 2.65848 2.79484 2.88696 3.23372 3.29856 3.45985 3.58024 3.66844 4.01444 4.23694 4.28889 4.36170 4.46490 4.58211 4.68235 4.80297 4.83100 4.92574 4.96187 5.05189 5.06374 5.11005 5.17844 5.22322 5.39720 5.43499 5.44321 5.47356 5.59074 5.69937 5.71434 5.75123 5.77767 5.90045 5.96282 5.99058 6.15096 6.40557 7.24577 7.36667 7.50222 7.90369 8.02149 8.36131 8.38252 9.13278 10.76617 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.002759 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.646138 B =10144.392535 C =11577.776146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.099 0.901 4 C 0.517 3.483 5 O -0.532 6.532 6 N -0.732 5.732 7 C 0.117 3.883 8 C 0.140 3.860 9 H 0.106 0.894 10 C 0.066 3.934 11 O -0.569 6.569 12 N -0.727 5.727 13 C 0.532 3.468 14 O -0.520 6.520 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.135 4.135 26 C -0.156 4.156 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.403 0.597 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.381 0.619 37 H 0.403 0.597 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -20.638 -12.024 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.117 0.883 4 C 0.304 3.696 5 O -0.408 6.408 6 N -0.385 5.385 7 C -0.007 4.007 8 C 0.034 3.966 9 H 0.124 0.876 10 C -0.014 4.014 11 O -0.374 6.374 12 N -0.381 5.381 13 C 0.319 3.681 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.154 4.154 26 C -0.193 4.193 27 C -0.221 4.221 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.238 0.762 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.228 0.772 37 H 0.238 0.762 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.986 -21.435 -11.543 24.366 hybrid contribution 0.782 0.879 0.215 1.196 sum 1.768 -20.557 -11.328 23.538 Atomic orbital electron populations 1.21755 0.92344 1.02801 1.03051 1.20914 0.97674 1.00092 0.91653 0.88346 1.20633 0.79977 0.84667 0.84361 1.90703 1.37322 1.26036 1.86729 1.46049 1.54337 1.32524 1.05566 1.21547 1.00939 0.95985 0.82268 1.21255 1.00498 0.81373 0.93501 0.87601 1.22547 0.81451 0.99407 0.97997 1.86447 1.18300 1.85200 1.47472 1.45988 1.33117 1.05960 1.53075 1.20344 0.82295 0.87316 0.78177 1.90704 1.27043 1.81652 1.40083 1.23280 1.05120 0.93462 1.05649 1.84766 1.38694 1.03434 1.64559 1.22309 1.17685 0.90025 1.36928 0.89381 1.24718 0.97100 0.94111 0.95394 1.69934 1.40305 0.98458 1.42931 0.86731 0.83523 0.79761 0.81795 1.19232 1.19932 1.15941 1.21935 0.96134 1.01536 0.95780 1.22779 0.93448 1.01079 1.02003 1.23116 1.05004 0.97684 0.96246 0.91066 0.92016 0.91855 0.76203 0.90317 0.89629 0.92089 0.92637 0.77233 0.76187 0.88426 0.88456 0.91902 0.87591 0.88980 0.88906 0.88757 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.07 37.16 0.34 -0.63 16 2 C -0.08 -0.67 2.88 -91.78 -0.26 -0.93 16 3 H 0.10 0.72 7.90 -51.93 -0.41 0.31 16 4 C 0.52 5.37 7.03 -10.99 -0.08 5.29 16 5 O -0.53 -7.30 15.08 5.56 0.08 -7.21 16 6 N -0.73 -6.56 5.28 -60.30 -0.32 -6.88 16 7 C 0.12 1.08 5.12 -4.04 -0.02 1.06 16 8 C 0.14 1.39 2.53 -67.93 -0.17 1.22 16 9 H 0.11 1.12 7.58 -51.92 -0.39 0.73 16 10 C 0.07 0.61 6.85 37.16 0.25 0.87 16 11 O -0.57 -5.21 12.63 -35.23 -0.45 -5.66 16 12 N -0.73 -8.33 4.46 -53.80 -0.24 -8.57 16 13 C 0.53 8.53 7.81 -10.99 -0.09 8.44 16 14 O -0.52 -10.09 15.52 5.55 0.09 -10.00 16 15 C -0.12 -2.27 6.16 36.01 0.22 -2.05 16 16 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 17 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 18 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 19 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 20 N -0.88 -26.20 13.97 55.49 0.78 -25.43 16 21 Si 0.86 21.35 27.74 -169.99 -4.72 16.63 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.24 -5.82 6.74 56.52 0.38 -5.43 16 25 C -0.14 -1.15 4.73 -90.59 -0.43 -1.58 16 26 C -0.16 -1.42 8.97 -26.73 -0.24 -1.66 16 27 C -0.18 -1.36 10.18 -26.69 -0.27 -1.63 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 31 H 0.40 3.26 7.56 -40.82 -0.31 2.95 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.92 7.39 -51.92 -0.38 0.53 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.03 9.12 45.56 0.42 2.45 16 37 H 0.40 4.08 8.60 -40.82 -0.35 3.73 16 38 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.10 1.63 8.14 -51.92 -0.42 1.20 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.11 0.89 8.11 -51.92 -0.42 0.47 16 42 H 0.09 0.93 8.10 -51.93 -0.42 0.50 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -35.04 390.65 -7.88 -42.92 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.47 Total: 7.06 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.53 Total: -3.33 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.22 Total: -40.87 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.28 Total: -22.87 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.72 Total: 16.63 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.04 -7.88 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756510461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.637 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds