Wall clock time and date at job start Tue Mar 31 2020 06:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 115.55373 * 2 1 4 4 C 1.52998 * 117.49725 * 145.71014 * 2 1 3 5 5 C 1.53003 * 117.49758 * 214.33281 * 2 1 3 6 6 H 1.09001 * 117.49714 * 0.02676 * 5 2 1 7 7 C 1.50697 * 117.50133 * 145.02060 * 5 2 1 8 8 O 1.21287 * 119.99775 * 0.02562 * 7 5 2 9 9 N 1.34773 * 120.00451 * 180.02562 * 7 5 2 10 10 C 1.46503 * 119.99600 * 359.97438 * 9 7 5 11 11 C 1.46499 * 120.00165 * 180.02562 * 9 7 5 12 12 C 1.52992 * 109.47658 * 89.99899 * 11 9 7 13 13 H 1.08998 * 109.46862 * 305.00512 * 12 11 9 14 14 O 1.42905 * 109.46980 * 64.99639 * 12 11 9 15 15 C 1.52997 * 109.47482 * 184.99947 * 12 11 9 16 16 N 1.46505 * 109.47212 * 179.97438 * 15 12 11 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 12 18 18 O 1.21280 * 120.00597 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99622 * 179.97438 * 17 16 15 20 20 S 1.81002 * 109.47156 * 180.02562 * 19 17 16 21 21 C 1.76204 * 100.00151 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99845 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00054 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00100 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99948 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47220 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47248 * 120.00156 * 25 23 21 28 28 H 1.48501 * 109.47068 * 240.00173 * 25 23 21 29 29 H 1.08999 * 109.47792 * 205.66902 * 1 2 3 30 30 H 1.09005 * 109.46990 * 325.67032 * 1 2 3 31 31 H 1.08999 * 109.47467 * 85.66285 * 1 2 3 32 32 H 1.09002 * 117.50156 * 0.02562 * 4 2 1 33 33 H 1.09003 * 117.49855 * 214.97258 * 4 2 1 34 34 H 1.08997 * 109.47297 * 269.99770 * 10 9 7 35 35 H 1.08993 * 109.47142 * 30.00125 * 10 9 7 36 36 H 1.09004 * 109.46651 * 150.00031 * 10 9 7 37 37 H 1.09001 * 109.46952 * 329.99135 * 11 9 7 38 38 H 1.09004 * 109.46722 * 210.00215 * 11 9 7 39 39 H 0.96696 * 114.00036 * 60.00352 * 14 12 11 40 40 H 1.09002 * 109.47153 * 59.99783 * 15 12 11 41 41 H 1.09001 * 109.46832 * 299.99974 * 15 12 11 42 42 H 0.96996 * 119.99606 * 0.02562 * 16 15 12 43 43 H 1.09001 * 109.47380 * 300.00190 * 19 17 16 44 44 H 1.09002 * 109.47060 * 60.00278 * 19 17 16 45 45 H 0.96999 * 120.00126 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2363 -1.1213 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 1.6111 -1.8577 -1.2694 7 6 3.5292 -0.7807 -1.4612 8 8 3.9720 0.3469 -1.4007 9 7 4.1933 -1.7294 -2.1505 10 6 3.6587 -3.0915 -2.2230 11 6 5.4504 -1.3989 -2.8264 12 6 6.6212 -1.6361 -1.8705 13 1 6.4602 -1.0719 -0.9519 14 8 6.7114 -3.0290 -1.5643 15 6 7.9212 -1.1740 -2.5317 16 7 9.0422 -1.4006 -1.6161 17 6 10.2940 -1.0675 -1.9881 18 8 10.4925 -0.5798 -3.0807 19 6 11.4470 -1.3001 -1.0461 20 16 12.9850 -0.7535 -1.8284 21 6 14.1321 -1.1311 -0.5452 22 1 13.7839 -1.5686 0.3788 23 6 15.4829 -0.8654 -0.7215 24 7 15.9071 -0.3308 -1.8471 25 14 16.6987 -1.2650 0.6391 26 1 15.9736 -1.8529 1.7940 27 1 17.7018 -2.2379 0.1366 28 1 17.3873 -0.0214 1.0686 29 1 -0.3635 -0.9262 0.4451 30 1 -0.3633 0.8487 0.5796 31 1 -0.3634 0.0777 -1.0247 32 1 1.6111 -1.8592 1.2673 33 1 3.1715 -0.8757 1.2679 34 1 4.0491 -3.6797 -1.3926 35 1 2.5709 -3.0583 -2.1651 36 1 3.9586 -3.5497 -3.1655 37 1 5.4354 -0.3521 -3.1299 38 1 5.5665 -2.0308 -3.7069 39 1 6.8548 -3.5930 -2.3366 40 1 7.8524 -0.1115 -2.7653 41 1 8.0821 -1.7382 -3.4503 42 1 8.8835 -1.7910 -0.7425 43 1 11.2859 -0.7349 -0.1281 44 1 11.5159 -2.3623 -0.8114 45 1 16.8511 -0.1454 -1.9705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756674801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:09 Heat of formation + Delta-G solvation = -100.977036 kcal Electronic energy + Delta-G solvation = -25198.010391 eV Core-core repulsion = 21342.670784 eV Total energy + Delta-G solvation = -3855.339608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.69046 -39.34905 -38.13891 -37.03140 -35.58784 -34.10311 -32.41517 -31.23610 -29.55804 -28.96843 -27.16073 -26.21964 -25.43312 -23.64500 -22.21437 -21.19957 -20.31794 -19.39396 -17.98177 -17.81218 -17.26445 -16.56747 -16.37113 -16.13693 -15.66868 -15.19417 -14.90515 -14.79126 -14.64879 -14.54313 -13.91245 -13.77414 -13.66186 -13.39934 -13.17634 -13.06133 -13.02740 -12.81946 -12.54497 -12.43398 -12.08191 -11.86046 -11.73875 -11.48476 -11.05844 -11.00496 -10.83342 -10.80591 -10.71947 -10.51687 -10.12384 -9.79303 -9.45261 -9.06607 -8.99338 -8.89845 -8.21742 -6.48475 -6.20495 -3.90828 2.09048 2.44048 3.04933 3.10645 3.22722 3.29241 3.34040 3.35974 3.69421 3.95747 4.07553 4.21722 4.27521 4.29716 4.44695 4.49379 4.61404 4.63628 4.74305 4.85697 5.02224 5.06056 5.14792 5.18126 5.20307 5.25466 5.27633 5.30688 5.32408 5.49077 5.54564 5.59277 5.69658 5.78165 5.85672 5.91936 6.01866 6.16902 6.58871 6.90205 7.24327 7.61467 7.72789 7.78125 8.37013 8.62043 9.25025 10.87038 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025475 B = 0.001812 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.859064 B =15452.856165 C =15799.352903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.145 4.145 5 C -0.193 4.193 6 H 0.124 0.876 7 C 0.542 3.458 8 O -0.537 6.537 9 N -0.606 5.606 10 C 0.081 3.919 11 C 0.087 3.913 12 C 0.083 3.917 13 H 0.108 0.892 14 O -0.553 6.553 15 C 0.093 3.907 16 N -0.732 5.732 17 C 0.532 3.468 18 O -0.520 6.520 19 C -0.153 4.153 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.375 0.625 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.402 0.598 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.935 -7.132 1.814 33.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.136 0.864 4 C -0.183 4.183 5 C -0.214 4.214 6 H 0.142 0.858 7 C 0.331 3.669 8 O -0.414 6.414 9 N -0.338 5.338 10 C -0.062 4.062 11 C -0.037 4.037 12 C 0.022 3.978 13 H 0.126 0.874 14 O -0.358 6.358 15 C -0.033 4.033 16 N -0.387 5.387 17 C 0.318 3.682 18 O -0.394 6.394 19 C -0.303 4.303 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.222 0.778 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -32.315 -5.435 0.498 32.772 hybrid contribution 0.630 -1.357 1.821 2.357 sum -31.685 -6.793 2.319 32.488 Atomic orbital electron populations 1.21402 0.92139 1.02325 1.02202 1.22407 0.95285 0.95156 1.01354 0.86449 1.23104 1.03226 1.01474 0.90485 1.22335 0.97660 1.05419 0.95987 0.85811 1.19737 0.84742 0.84302 0.78132 1.90724 1.68775 1.20977 1.60880 1.47590 1.23050 1.10827 1.52360 1.21863 0.99232 0.82312 1.02771 1.22126 0.82960 1.03914 0.94710 1.22594 0.92334 0.83032 0.99825 0.87416 1.86617 1.95214 1.16417 1.37586 1.21848 0.85643 1.02302 0.93488 1.45843 1.06222 1.66618 1.20054 1.20325 0.83087 0.76995 0.87788 1.90700 1.84167 1.42239 1.22316 1.23524 0.99628 1.05179 1.02000 1.85381 0.92830 1.81767 1.23470 1.22918 0.94012 1.48249 1.03115 0.90854 1.24995 0.97543 0.94643 0.96438 1.70030 1.15746 1.40396 1.24147 0.86109 0.80246 0.78192 0.80902 1.19615 1.20568 1.20570 0.92328 0.91552 0.91966 0.87698 0.88192 0.91637 0.91128 0.91114 0.88390 0.89555 0.77812 0.90516 0.91218 0.76319 0.89209 0.89175 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.19 37.15 0.38 -0.20 16 2 C -0.12 -0.84 5.92 -90.62 -0.54 -1.38 16 3 H 0.12 1.03 7.67 -51.93 -0.40 0.63 16 4 C -0.15 -0.90 9.88 -26.73 -0.26 -1.16 16 5 C -0.19 -1.31 5.01 -91.77 -0.46 -1.77 16 6 H 0.12 0.57 6.44 -51.93 -0.33 0.23 16 7 C 0.54 5.25 7.46 -10.99 -0.08 5.17 16 8 O -0.54 -7.30 15.84 5.55 0.09 -7.21 16 9 N -0.61 -4.51 2.84 -181.58 -0.52 -5.03 16 10 C 0.08 0.35 9.91 59.85 0.59 0.94 16 11 C 0.09 0.65 5.11 -4.05 -0.02 0.63 16 12 C 0.08 0.72 3.30 -26.74 -0.09 0.64 16 13 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 14 O -0.55 -4.41 12.64 -35.23 -0.45 -4.86 16 15 C 0.09 1.05 5.34 -4.04 -0.02 1.02 16 16 N -0.73 -10.13 5.45 -60.29 -0.33 -10.46 16 17 C 0.53 10.17 7.85 -10.99 -0.09 10.08 16 18 O -0.52 -11.98 15.86 5.56 0.09 -11.89 16 19 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 22 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 25 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.06 0.21 7.90 -51.93 -0.41 -0.20 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.44 8.05 -51.93 -0.42 0.03 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.21 5.99 -51.93 -0.31 -0.11 16 36 H 0.07 0.20 7.89 -51.93 -0.41 -0.21 16 37 H 0.10 0.89 7.42 -51.93 -0.39 0.51 16 38 H 0.09 0.44 7.89 -51.93 -0.41 0.03 16 39 H 0.37 1.87 9.05 45.56 0.41 2.28 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.40 4.78 8.35 -40.82 -0.34 4.44 16 43 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -37.75 394.43 -8.19 -45.95 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.35 Total: 2.63 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.17 Total: -2.11 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.11 Total: -41.17 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.27 Total: -23.96 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.75 -8.19 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756674801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.031 kcal (2) G-P(sol) polarization free energy of solvation -37.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds