Wall clock time and date at job start Tue Mar 31 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46874 * 2 1 4 4 C 1.35903 * 116.99521 * 180.02562 * 3 2 1 5 5 C 1.38749 * 120.05802 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94474 * 180.02562 * 5 4 3 7 7 C 1.38294 * 120.05398 * 0.02766 * 6 5 4 8 8 C 1.38233 * 120.11135 * 359.95202 * 7 6 5 9 9 C 1.50706 * 119.97070 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46962 * 90.00217 * 9 8 7 11 11 C 1.35021 * 120.44089 * 94.71938 * 10 9 8 12 12 N 1.36839 * 119.68035 * 180.26960 * 11 10 9 13 13 C 1.46501 * 119.68602 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47619 * 270.00251 * 13 12 11 15 15 H 1.07999 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00050 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99812 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00154 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47598 * 89.99295 * 18 16 14 20 20 H 1.48500 * 109.47080 * 209.99936 * 18 16 14 21 21 H 1.48510 * 109.46759 * 329.99585 * 18 16 14 22 22 C 1.34543 * 120.62104 * 0.02562 * 12 11 10 23 23 O 1.21585 * 119.53075 * 180.02562 * 22 12 11 24 24 N 1.34593 * 120.93065 * 359.97438 * 22 12 11 25 25 H 0.97005 * 119.86817 * 179.97438 * 24 22 12 26 26 C 1.34834 * 120.26722 * 359.97438 * 24 22 12 27 27 O 1.21781 * 120.30935 * 179.97438 * 26 24 22 28 28 C 1.38166 * 120.05934 * 0.28145 * 8 7 6 29 29 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46883 * 299.99831 * 1 2 3 31 31 H 1.08992 * 109.47048 * 59.99950 * 1 2 3 32 32 H 1.08999 * 109.46883 * 240.00169 * 2 1 3 33 33 H 1.09002 * 109.47043 * 120.00067 * 2 1 3 34 34 H 1.07998 * 120.02969 * 0.04675 * 5 4 3 35 35 H 1.07997 * 119.97611 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.93978 * 179.97438 * 7 6 5 37 37 H 1.08993 * 109.47310 * 329.99889 * 9 8 7 38 38 H 1.09004 * 109.47084 * 210.00165 * 9 8 7 39 39 H 1.07993 * 120.15979 * 0.27862 * 11 10 9 40 40 H 1.08994 * 109.47168 * 30.01329 * 13 12 11 41 41 H 1.09004 * 109.46884 * 150.00574 * 13 12 11 42 42 H 0.97000 * 120.00019 * 180.02562 * 17 16 14 43 43 H 1.07997 * 120.03260 * 179.74668 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0005 6 6 5.5689 0.6094 -0.0005 7 6 6.0962 1.8879 0.0000 8 6 5.2552 2.9849 -0.0004 9 6 5.8332 4.3767 -0.0004 10 6 6.0264 4.8404 -1.4213 11 6 5.0772 5.5793 -2.0347 12 7 5.2663 5.9874 -3.3271 13 6 4.2363 6.7887 -3.9929 14 6 3.2600 5.8749 -4.6877 15 1 3.3931 4.8043 -4.6379 16 6 2.1962 6.4055 -5.3861 17 7 1.3439 5.6080 -5.9920 18 14 1.9655 8.2572 -5.4717 19 1 2.6877 8.7920 -6.6538 20 1 0.5190 8.5708 -5.5917 21 1 2.5065 8.8810 -4.2373 22 6 6.3887 5.6589 -3.9922 23 8 6.5363 6.0325 -5.1398 24 7 7.3508 4.9234 -3.4049 25 1 8.1537 4.6951 -3.8990 26 6 7.2030 4.5027 -2.1324 27 8 8.0729 3.8368 -1.6003 28 6 3.8851 2.8066 0.0045 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.7886 -0.5728 -0.0008 35 1 6.2281 -0.2460 -0.0009 36 1 7.1669 2.0293 0.0004 37 1 6.7943 4.3710 0.5137 38 1 5.1505 5.0537 0.5131 39 1 4.1733 5.8471 -1.5079 40 1 3.7081 7.3893 -3.2526 41 1 4.7045 7.4452 -4.7264 42 1 0.5957 5.9813 -6.4837 43 1 3.2284 3.6640 0.0082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001748651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:55 Heat of formation + Delta-G solvation = -60.221520 kcal Electronic energy + Delta-G solvation = -27940.787577 eV Core-core repulsion = 23951.771310 eV Total energy + Delta-G solvation = -3989.016267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78227 -40.06308 -38.67378 -37.66020 -36.62976 -34.50452 -33.81029 -32.65175 -32.02750 -30.54904 -29.41032 -28.32058 -26.18224 -24.45527 -23.69764 -23.50034 -22.39528 -21.61980 -20.55695 -18.77538 -18.13003 -17.60367 -17.33300 -16.65557 -16.11727 -16.02023 -15.92862 -15.74133 -15.44623 -14.62024 -14.40066 -14.19167 -13.86445 -13.54990 -13.49099 -13.32462 -13.19085 -13.01931 -12.69634 -12.62768 -12.12885 -12.06903 -11.85482 -11.72959 -11.54661 -11.34386 -10.95008 -10.79617 -10.72352 -10.69110 -10.41854 -10.09269 -9.91523 -9.89658 -9.66600 -8.82443 -8.71600 -8.04906 -7.86095 -6.30935 -4.35697 1.28926 1.51068 1.62131 2.41956 2.62824 3.13580 3.18428 3.21689 3.23016 3.61177 3.84859 3.93854 4.18073 4.75642 4.79231 4.81275 4.92971 4.96413 5.02618 5.09358 5.10811 5.19148 5.28692 5.41200 5.53906 5.59437 5.62298 5.67578 5.76565 5.92331 5.95863 5.98593 6.16649 6.21555 6.35942 6.42083 6.43907 6.58372 6.67219 6.82222 6.85502 6.90366 7.21067 7.51934 7.69948 7.89100 8.16133 8.43251 8.69693 9.23488 10.81381 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.004461 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.806991 B = 6275.047086 C = 8732.357394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.315 6.315 4 C 0.129 3.871 5 C -0.216 4.216 6 C -0.085 4.085 7 C -0.142 4.142 8 C -0.037 4.037 9 C 0.004 3.996 10 C -0.304 4.304 11 C 0.217 3.783 12 N -0.505 5.505 13 C 0.209 3.791 14 C -0.548 4.548 15 H 0.080 0.920 16 C 0.082 3.918 17 N -0.883 5.883 18 Si 0.875 3.125 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.264 1.264 22 C 0.690 3.310 23 O -0.532 6.532 24 N -0.663 5.663 25 H 0.424 0.576 26 C 0.562 3.438 27 O -0.535 6.535 28 C -0.145 4.145 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.173 0.827 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.269 0.731 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -6.379 15.186 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.229 6.229 4 C 0.084 3.916 5 C -0.234 4.234 6 C -0.103 4.103 7 C -0.160 4.160 8 C -0.037 4.037 9 C -0.034 4.034 10 C -0.314 4.314 11 C 0.088 3.912 12 N -0.220 5.220 13 C 0.090 3.910 14 C -0.585 4.585 15 H 0.098 0.902 16 C -0.123 4.123 17 N -0.520 5.520 18 Si 0.701 3.299 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.188 1.188 22 C 0.392 3.608 23 O -0.404 6.404 24 N -0.331 5.331 25 H 0.264 0.736 26 C 0.359 3.641 27 O -0.413 6.413 28 C -0.164 4.164 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.190 0.810 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.328 -6.267 14.622 16.253 hybrid contribution 0.028 0.326 -0.618 0.699 sum 3.355 -5.942 14.004 15.578 Atomic orbital electron populations 1.21777 0.92823 1.02647 1.03752 1.22736 0.95854 0.82236 1.01110 1.86089 1.19167 1.28968 1.88696 1.18926 0.82117 0.94132 0.96457 1.21168 0.94500 0.97741 1.10040 1.20897 0.94143 0.97293 0.97943 1.21086 1.00381 0.91721 1.02847 1.19654 0.92047 0.95562 0.96465 1.18924 1.01886 0.91847 0.90772 1.19934 0.97410 1.13756 1.00301 1.22291 0.97217 0.88065 0.83598 1.45163 1.17819 1.47656 1.11392 1.20275 0.85011 0.91498 0.94249 1.21098 1.08742 0.94871 1.33835 0.90234 1.24786 0.95120 0.98224 0.94165 1.69870 1.14415 1.35243 1.32443 0.86876 0.78109 0.85372 0.79521 1.19562 1.20600 1.18840 1.15949 0.80211 0.79758 0.84923 1.91035 1.78326 1.56028 1.15011 1.44658 1.22056 1.50485 1.15876 0.73568 1.17010 0.87793 0.79074 0.80264 1.90814 1.43991 1.38895 1.67558 1.20313 0.94615 0.94940 1.06502 0.90585 0.91596 0.91189 0.92134 0.92355 0.86034 0.86193 0.85281 0.89311 0.89810 0.80978 0.93059 0.92661 0.92051 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.58 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.47 10.14 -19.43 -0.20 -4.66 16 4 C 0.13 1.86 6.69 -39.22 -0.26 1.60 16 5 C -0.22 -2.80 9.04 -39.43 -0.36 -3.15 16 6 C -0.08 -1.08 10.04 -39.60 -0.40 -1.48 16 7 C -0.14 -1.97 9.64 -39.56 -0.38 -2.35 16 8 C -0.04 -0.51 5.11 -104.65 -0.54 -1.04 16 9 C 0.00 0.05 5.24 -29.03 -0.15 -0.10 16 10 C -0.30 -4.50 5.13 -104.49 -0.54 -5.04 16 11 C 0.22 3.32 10.01 -16.46 -0.16 3.15 16 12 N -0.51 -9.60 2.59 -122.83 -0.32 -9.91 16 13 C 0.21 4.48 4.16 -5.19 -0.02 4.46 16 14 C -0.55 -14.42 9.94 -34.44 -0.34 -14.77 16 15 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.88 -25.62 13.96 55.43 0.77 -24.85 16 18 Si 0.88 19.53 27.47 -169.99 -4.67 14.86 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 22 C 0.69 13.61 8.37 -87.29 -0.73 12.88 16 23 O -0.53 -12.22 16.66 5.29 0.09 -12.13 16 24 N -0.66 -11.10 5.23 -18.50 -0.10 -11.19 16 25 H 0.42 6.22 8.89 -40.82 -0.36 5.86 16 26 C 0.56 9.32 7.72 -14.96 -0.12 9.20 16 27 O -0.53 -9.48 16.55 5.12 0.08 -9.40 16 28 C -0.15 -2.07 9.64 -39.43 -0.38 -2.45 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 34 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.80 7.46 -52.49 -0.39 1.40 16 37 H 0.09 1.06 7.74 -51.93 -0.40 0.66 16 38 H 0.08 0.80 8.00 -51.93 -0.42 0.38 16 39 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.05 0.98 7.09 -51.93 -0.37 0.61 16 41 H 0.06 1.24 6.80 -51.93 -0.35 0.89 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -32.92 367.85 -8.23 -41.15 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.55 Total: 7.76 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -3.89 Total: 2.84 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.36 Total: -45.96 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.02 Total: -26.19 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.92 -8.23 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001748651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.074 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds