Wall clock time and date at job start Tue Mar 31 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00271 * 2 1 4 4 C 1.52994 * 109.47613 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47472 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47386 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00287 * 180.02562 * 6 5 4 8 8 O 1.21655 * 119.99493 * 359.97438 * 7 6 5 9 9 C 1.47104 * 120.00180 * 180.02562 * 7 6 5 10 10 C 1.43203 * 119.99932 * 359.97438 * 9 7 6 11 11 N 7.61027 * 171.36524 * 0.02562 * 2 1 3 12 12 C 1.37887 * 119.99945 * 179.97438 * 9 7 6 13 13 C 1.46304 * 119.99989 * 186.28371 * 12 9 7 14 14 C 1.40219 * 120.24846 * 32.24331 * 13 12 9 15 15 C 1.37631 * 119.86642 * 180.02562 * 14 13 12 16 16 C 1.38712 * 120.39366 * 359.97438 * 15 14 13 17 17 C 1.38044 * 120.51271 * 359.97438 * 16 15 14 18 18 C 1.38778 * 120.11666 * 0.02562 * 17 16 15 19 19 O 1.35441 * 120.19197 * 179.97438 * 18 17 16 20 20 C 1.34738 * 117.00012 * 5.64662 * 19 18 17 21 21 H 1.07990 * 120.00293 * 354.89965 * 20 19 18 22 22 C 1.38777 * 120.00004 * 174.90647 * 20 19 18 23 23 N 1.31480 * 119.99464 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00261 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47302 * 89.99520 * 24 22 20 26 26 H 1.48501 * 109.47120 * 209.99755 * 24 22 20 27 27 H 1.48499 * 109.46867 * 329.99573 * 24 22 20 28 28 H 1.08997 * 109.47329 * 299.99573 * 1 2 3 29 29 H 1.09003 * 109.47054 * 59.99935 * 1 2 3 30 30 H 1.08997 * 109.46640 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46713 * 60.00246 * 3 2 1 32 32 H 1.08993 * 109.47133 * 300.00602 * 3 2 1 33 33 H 1.09002 * 109.46898 * 60.00201 * 4 3 2 34 34 H 1.09004 * 109.47116 * 300.00678 * 4 3 2 35 35 H 1.09002 * 109.47187 * 60.00021 * 5 4 3 36 36 H 1.09001 * 109.46722 * 300.00363 * 5 4 3 37 37 H 0.97000 * 119.99947 * 0.02562 * 6 5 4 38 38 H 1.07994 * 119.99754 * 6.29019 * 12 9 7 39 39 H 1.07997 * 120.06392 * 0.04310 * 14 13 12 40 40 H 1.07999 * 119.80077 * 180.02562 * 15 14 13 41 41 H 1.07999 * 119.74739 * 179.72871 * 16 15 14 42 42 H 1.08004 * 119.94249 * 179.97438 * 17 16 15 43 43 H 0.97004 * 119.99154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 7 5.6182 2.4667 0.0013 7 6 6.3822 3.5771 0.0023 8 8 5.8589 4.6753 0.0028 9 6 7.8486 3.4609 0.0018 10 6 8.4645 2.1681 0.0007 11 7 8.9530 1.1426 0.0005 12 6 8.6302 4.5969 0.0023 13 6 10.0823 4.4858 -0.1369 14 6 10.6415 3.4532 -0.9032 15 6 12.0086 3.3558 -1.0285 16 6 12.8380 4.2739 -0.4013 17 6 12.3046 5.2974 0.3561 18 6 10.9290 5.4156 0.4966 19 8 10.4040 6.4189 1.2398 20 6 11.2637 7.3381 1.7209 21 1 12.3265 7.2103 1.5784 22 6 10.7833 8.4491 2.3998 23 7 9.4893 8.6048 2.5730 24 14 11.9750 9.7231 3.0675 25 1 12.2142 10.7653 2.0370 26 1 11.3979 10.3518 4.2828 27 1 13.2604 9.0650 3.4136 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6436 -0.8892 34 1 3.8568 0.6438 0.8908 35 1 3.8358 3.1231 0.8913 36 1 3.8365 3.1235 -0.8887 37 1 6.0354 1.5910 0.0005 38 1 8.1704 5.5686 0.1056 39 1 10.0007 2.7360 -1.3944 40 1 12.4382 2.5603 -1.6193 41 1 13.9095 4.1850 -0.5030 42 1 12.9590 6.0069 0.8407 43 1 9.1536 9.3812 3.0478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022345125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:03 Heat of formation + Delta-G solvation = -41.030707 kcal Electronic energy + Delta-G solvation = -26300.735456 eV Core-core repulsion = 22312.551365 eV Total energy + Delta-G solvation = -3988.184091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.79650 -39.27586 -38.28721 -37.11188 -36.11614 -35.46293 -33.39601 -32.60555 -32.08729 -29.69814 -29.13547 -27.35835 -25.71922 -25.40182 -23.88636 -22.07586 -21.74395 -20.92045 -20.82580 -18.41018 -18.25740 -17.06476 -16.76112 -16.63155 -15.91579 -15.53812 -15.33486 -15.02420 -14.94630 -14.65135 -14.40398 -14.16277 -14.03484 -13.97067 -13.68952 -13.22938 -12.88869 -12.73733 -12.54775 -12.45441 -12.19899 -12.12374 -11.96649 -11.90060 -11.60516 -11.42458 -11.36038 -11.09942 -10.98008 -10.86616 -10.61118 -10.02404 -9.87673 -9.70381 -9.50088 -9.10238 -9.05202 -8.12099 -7.40264 -6.74677 -4.30128 0.73298 2.12598 2.24924 2.93069 2.95218 2.99291 3.00278 3.05376 3.09186 3.60317 3.73531 3.91201 4.33727 4.36050 4.62540 4.71295 4.78421 4.79235 4.88870 4.98513 5.02645 5.03890 5.14812 5.24716 5.31265 5.39523 5.43897 5.50374 5.60813 5.81329 5.82165 5.87701 5.91491 6.22922 6.36082 6.39038 6.45803 6.53693 6.78937 6.83423 6.96616 7.07275 7.11781 7.49546 7.54930 7.67901 7.82100 8.38462 8.68069 9.30278 10.40329 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.002463 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.287381 B =11364.594309 C =13221.039502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.065 3.935 4 C -0.133 4.133 5 C 0.125 3.875 6 N -0.735 5.735 7 C 0.584 3.416 8 O -0.534 6.534 9 C -0.212 4.212 10 C 0.271 3.729 11 N -0.446 5.446 12 C 0.140 3.860 13 C -0.204 4.204 14 C -0.034 4.034 15 C -0.218 4.218 16 C -0.045 4.045 17 C -0.232 4.232 18 C 0.182 3.818 19 O -0.149 6.149 20 C -0.395 4.395 21 H 0.099 0.901 22 C 0.045 3.955 23 N -0.839 5.839 24 Si 0.946 3.054 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.265 1.265 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.159 0.841 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -9.834 -5.015 14.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.171 4.171 5 C 0.001 3.999 6 N -0.387 5.387 7 C 0.373 3.627 8 O -0.412 6.412 9 C -0.220 4.220 10 C -0.041 4.041 11 N -0.124 5.124 12 C 0.116 3.884 13 C -0.206 4.206 14 C -0.052 4.052 15 C -0.237 4.237 16 C -0.064 4.064 17 C -0.251 4.251 18 C 0.123 3.877 19 O -0.048 6.048 20 C -0.470 4.470 21 H 0.117 0.883 22 C -0.164 4.164 23 N -0.470 5.470 24 Si 0.770 3.230 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.189 1.189 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.177 0.823 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.152 0.848 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.046 -10.522 -4.788 14.679 hybrid contribution 0.481 0.768 0.363 0.976 sum -8.565 -9.755 -4.424 13.715 Atomic orbital electron populations 1.22746 0.80810 1.02796 1.00122 1.87861 1.19885 1.28012 1.95483 1.22388 0.93268 0.84742 1.00842 1.21693 0.93873 0.97248 1.04245 1.21134 0.79710 0.96092 1.02953 1.45771 1.06543 1.09095 1.77293 1.17522 0.85525 0.83964 0.75685 1.90844 1.73942 1.25976 1.50424 1.17766 0.91891 0.86821 1.25484 1.25493 0.93240 0.92612 0.92797 1.81215 1.07740 1.11823 1.11629 1.23093 0.91514 0.97786 0.75999 1.17985 0.91237 1.01251 1.10136 1.21129 0.95259 0.93652 0.95174 1.20547 0.93217 1.02590 1.07365 1.21016 0.98921 0.92877 0.93585 1.21166 0.94723 1.02648 1.06564 1.19405 0.91317 0.88068 0.88865 1.83831 1.36865 1.30063 1.54033 1.21517 0.89791 1.00131 1.35577 0.88318 1.25442 0.97101 0.97461 0.96357 1.69999 1.12223 1.28473 1.36286 0.85623 0.79170 0.79532 0.78694 1.19488 1.19932 1.18916 0.93941 0.93976 0.89612 0.92737 0.92778 0.90347 0.90299 0.90987 0.91073 0.76695 0.82321 0.86489 0.87010 0.86818 0.84775 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.79 10.70 -35.23 -0.38 -4.16 16 3 C 0.06 0.53 5.94 37.15 0.22 0.75 16 4 C -0.13 -1.15 5.70 -26.74 -0.15 -1.30 16 5 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 6 N -0.73 -9.39 5.51 -61.48 -0.34 -9.73 16 7 C 0.58 9.55 7.75 -12.66 -0.10 9.45 16 8 O -0.53 -10.37 16.30 5.23 0.09 -10.29 16 9 C -0.21 -3.57 5.84 -104.50 -0.61 -4.18 16 10 C 0.27 4.48 10.53 -22.47 -0.24 4.25 16 11 N -0.45 -7.69 18.04 41.83 0.75 -6.94 16 12 C 0.14 2.62 9.04 -36.47 -0.33 2.29 16 13 C -0.20 -4.03 5.56 -104.94 -0.58 -4.61 16 14 C -0.03 -0.60 8.29 -39.06 -0.32 -0.92 16 15 C -0.22 -3.65 10.02 -39.63 -0.40 -4.05 16 16 C -0.05 -0.76 10.03 -39.48 -0.40 -1.16 16 17 C -0.23 -4.55 9.16 -39.45 -0.36 -4.91 16 18 C 0.18 3.99 6.67 -38.41 -0.26 3.73 16 19 O -0.15 -3.79 9.17 1.25 0.01 -3.77 16 20 C -0.40 -9.94 9.49 30.93 0.29 -9.64 16 21 H 0.10 2.26 5.21 -52.49 -0.27 1.99 16 22 C 0.04 1.11 5.50 -17.50 -0.10 1.02 16 23 N -0.84 -22.57 13.67 55.49 0.76 -21.81 16 24 Si 0.95 18.73 29.55 -169.99 -5.02 13.70 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 27 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 4.59 7.35 -40.82 -0.30 4.29 16 38 H 0.16 3.18 7.55 -52.49 -0.40 2.78 16 39 H 0.12 1.96 5.66 -52.49 -0.30 1.66 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.13 2.56 5.64 -52.48 -0.30 2.26 16 43 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -29.76 379.56 -5.99 -35.75 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.35 Total: 8.21 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.24 Total: -6.68 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 1.17 Total: -38.47 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.28 Total: -18.22 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.76 -5.99 -35.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022345125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.281 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds