Wall clock time and date at job start Tue Mar 31 2020 05:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47506 * 2 1 4 4 C 1.35661 * 117.00539 * 179.97438 * 3 2 1 5 5 C 1.39077 * 119.88651 * 179.97438 * 4 3 2 6 6 C 1.37116 * 120.11591 * 180.02562 * 5 4 3 7 7 C 1.40047 * 119.88418 * 359.97438 * 6 5 4 8 8 C 1.46847 * 120.11494 * 180.02562 * 7 6 5 9 9 O 1.21294 * 120.00611 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.52996 * 109.47701 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47696 * 179.97438 * 11 10 8 13 13 O 1.21299 * 119.99595 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00524 * 179.97438 * 12 11 10 15 15 C 1.37101 * 120.00279 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00102 * 17.72321 * 15 14 12 17 17 C 1.38947 * 120.00249 * 197.72183 * 15 14 12 18 18 N 1.31414 * 119.99658 * 21.39435 * 17 15 14 19 19 Si 1.86793 * 120.00363 * 201.39847 * 17 15 14 20 20 H 1.48502 * 109.47388 * 59.99750 * 19 17 15 21 21 H 1.48503 * 109.47455 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47171 * 300.00006 * 19 17 15 23 23 C 1.46500 * 120.00025 * 359.97438 * 14 12 11 24 24 C 1.47200 * 109.47330 * 84.23109 * 23 14 12 25 25 N 9.85781 * 157.09659 * 320.48402 * 4 1 2 26 26 C 1.40043 * 119.76858 * 0.27817 * 7 6 5 27 27 C 1.37118 * 119.88262 * 359.46426 * 26 7 6 28 28 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47211 * 300.00645 * 1 2 3 30 30 H 1.09001 * 109.46464 * 60.00133 * 1 2 3 31 31 H 1.09002 * 109.47334 * 239.99780 * 2 1 3 32 32 H 1.09003 * 109.47362 * 119.99902 * 2 1 3 33 33 H 1.07995 * 119.94555 * 0.02562 * 5 4 3 34 34 H 1.08002 * 120.06352 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47164 * 300.00514 * 10 8 7 36 36 H 1.09002 * 109.46949 * 59.99875 * 10 8 7 37 37 H 1.09002 * 109.46589 * 300.00078 * 11 10 8 38 38 H 1.09002 * 109.47211 * 59.99803 * 11 10 8 39 39 H 0.97003 * 120.00075 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.47287 * 204.23478 * 23 14 12 41 41 H 1.09005 * 109.46586 * 324.23509 * 23 14 12 42 42 H 1.07997 * 120.05658 * 179.69446 * 26 7 6 43 43 H 1.07998 * 119.94388 * 180.25446 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3513 1.5250 0.0005 5 6 3.8803 2.8112 0.0000 6 6 5.2389 2.9964 0.0000 7 6 6.0942 1.8874 0.0011 8 6 7.5501 2.0799 0.0017 9 8 8.0138 3.2007 0.0017 10 6 8.4681 0.8847 0.0023 11 6 9.9228 1.3589 0.0035 12 6 10.8408 0.1639 0.0047 13 8 10.3771 -0.9570 0.0050 14 7 12.1769 0.3404 0.0053 15 6 13.0120 -0.7469 0.0069 16 1 12.6346 -1.7181 -0.2770 17 6 14.3440 -0.5993 0.3739 18 7 14.7145 0.4293 1.1030 19 14 15.6080 -1.8628 -0.1693 20 1 15.6485 -1.9166 -1.6528 21 1 16.9459 -1.4788 0.3483 22 1 15.2347 -3.1975 0.3643 23 6 12.7369 1.6941 0.0043 24 6 12.7947 2.2023 1.3846 25 7 12.8423 2.5913 2.4420 26 6 5.5564 0.5944 -0.0037 27 6 4.1963 0.4203 0.0016 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2199 3.6657 -0.0004 34 1 5.6488 3.9956 -0.0008 35 1 8.2816 0.2837 0.8922 36 1 8.2823 0.2835 -0.8877 37 1 10.1096 1.9601 -0.8863 38 1 10.1083 1.9600 0.8936 39 1 15.6444 0.5322 1.3595 40 1 13.7420 1.6712 -0.4169 41 1 12.1055 2.3480 -0.5975 42 1 6.2117 -0.2640 -0.0079 43 1 3.7804 -0.5764 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058309679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:58 Heat of formation + Delta-G solvation = -51.581965 kcal Electronic energy + Delta-G solvation = -26612.051546 eV Core-core repulsion = 22623.409918 eV Total energy + Delta-G solvation = -3988.641628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.64973 -39.54883 -38.67683 -37.31697 -35.87588 -34.44225 -32.81290 -32.30585 -31.74458 -31.21924 -30.12984 -27.46516 -26.28773 -24.63854 -23.99440 -23.13844 -21.76008 -19.78907 -18.91884 -18.66760 -17.88171 -17.01612 -16.54855 -16.36715 -16.35857 -15.84591 -15.36194 -15.02841 -14.61080 -14.29580 -14.13857 -13.96525 -13.83311 -13.70195 -13.59247 -13.09610 -12.98782 -12.71668 -12.60377 -12.47471 -12.16510 -12.10101 -11.93026 -11.61707 -11.43236 -11.29166 -11.14711 -11.11975 -11.03088 -10.80626 -10.54713 -10.43558 -10.27071 -9.58427 -9.37081 -9.24481 -8.59951 -8.50282 -8.03854 -6.49632 -3.99130 0.58324 1.11587 2.40701 2.75340 3.12385 3.22112 3.24372 3.58514 3.61316 3.82171 4.04281 4.06811 4.17636 4.38460 4.46341 4.52974 4.63645 4.78488 4.85434 4.91948 4.95127 5.07349 5.12192 5.17645 5.27517 5.32061 5.35596 5.46134 5.53745 5.56992 5.73249 5.75864 5.92066 5.94141 6.04148 6.16724 6.25355 6.30493 6.34616 6.40322 6.54374 7.01042 7.47462 7.63698 7.90747 8.28362 8.79212 9.00283 9.20711 9.74410 10.56443 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022851 B = 0.002184 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.049056 B =12815.419232 C =13747.406845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.314 6.314 4 C 0.158 3.842 5 C -0.168 4.168 6 C -0.022 4.022 7 C -0.206 4.206 8 C 0.398 3.602 9 O -0.457 6.457 10 C -0.144 4.144 11 C -0.127 4.127 12 C 0.455 3.545 13 O -0.578 6.578 14 N -0.442 5.442 15 C -0.315 4.315 16 H 0.108 0.892 17 C 0.031 3.969 18 N -0.877 5.877 19 Si 0.928 3.072 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.219 3.781 24 C 0.248 3.752 25 N -0.472 5.472 26 C -0.027 4.027 27 C -0.224 4.224 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.274 0.726 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.141 0.859 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.273 1.822 -5.976 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.112 3.888 5 C -0.187 4.187 6 C -0.040 4.040 7 C -0.207 4.207 8 C 0.277 3.723 9 O -0.333 6.333 10 C -0.182 4.182 11 C -0.167 4.167 12 C 0.244 3.756 13 O -0.462 6.462 14 N -0.162 5.162 15 C -0.442 4.442 16 H 0.126 0.874 17 C -0.173 4.173 18 N -0.515 5.515 19 Si 0.754 3.246 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.091 3.909 24 C -0.071 4.071 25 N -0.152 5.152 26 C -0.045 4.045 27 C -0.242 4.242 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.103 0.897 42 H 0.159 0.841 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.151 2.615 -4.335 22.722 hybrid contribution 0.885 -1.048 -0.413 1.432 sum -21.266 1.567 -4.748 21.846 Atomic orbital electron populations 1.21784 0.92561 1.03032 1.03583 1.22873 0.96032 0.81630 1.01852 1.86025 1.19106 1.29837 1.87726 1.19356 0.82262 0.94274 0.92935 1.20270 0.95201 0.94855 1.08356 1.21134 0.91775 0.99313 0.91806 1.20511 0.95456 0.94027 1.10685 1.22507 0.88398 0.90605 0.70830 1.90516 1.78847 1.27271 1.36700 1.21711 0.93840 0.96938 1.05720 1.21406 0.93346 0.97904 1.04087 1.20103 0.82763 0.90054 0.82665 1.90524 1.75215 1.25675 1.54777 1.43625 1.04209 1.04621 1.63754 1.19664 0.89818 0.90185 1.44522 0.87428 1.25290 0.98689 0.98202 0.95083 1.69869 1.18732 1.30985 1.31938 0.85963 0.78951 0.80461 0.79180 1.19713 1.21049 1.19849 1.18759 1.02786 0.83846 0.85464 1.28922 0.91073 0.91594 0.95468 1.80534 1.10935 1.11344 1.12356 1.21273 0.94631 0.96837 0.91762 1.21123 0.94307 0.98269 1.10535 0.90194 0.91465 0.91461 0.91633 0.91638 0.84720 0.84163 0.87811 0.87651 0.89435 0.89789 0.91564 0.85562 0.89670 0.84115 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.28 37.16 0.38 -0.31 16 2 C 0.05 0.31 5.45 37.16 0.20 0.52 16 3 O -0.31 -2.90 10.12 -18.69 -0.19 -3.09 16 4 C 0.16 1.59 6.70 -38.96 -0.26 1.32 16 5 C -0.17 -1.70 9.95 -39.68 -0.39 -2.10 16 6 C -0.02 -0.25 9.57 -39.31 -0.38 -0.62 16 7 C -0.21 -2.50 5.87 -105.06 -0.62 -3.12 16 8 C 0.40 5.64 7.11 -30.83 -0.22 5.43 16 9 O -0.46 -7.59 15.97 5.54 0.09 -7.50 16 10 C -0.14 -2.14 3.59 -27.88 -0.10 -2.24 16 11 C -0.13 -2.22 3.59 -27.89 -0.10 -2.32 16 12 C 0.46 10.08 7.57 -10.99 -0.08 9.99 16 13 O -0.58 -14.38 15.63 5.54 0.09 -14.29 16 14 N -0.44 -10.29 2.60 -117.93 -0.31 -10.59 16 15 C -0.31 -8.05 9.32 -14.93 -0.14 -8.19 16 16 H 0.11 2.88 7.39 -52.49 -0.39 2.50 16 17 C 0.03 0.77 4.87 -17.47 -0.08 0.68 16 18 N -0.88 -22.24 9.48 55.50 0.53 -21.71 16 19 Si 0.93 19.57 29.60 -169.99 -5.03 14.54 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C 0.22 4.42 4.91 -6.83 -0.03 4.39 16 24 C 0.25 5.62 12.92 -21.03 -0.27 5.35 16 25 N -0.47 -11.53 18.48 41.84 0.77 -10.75 16 26 C -0.03 -0.28 9.44 -39.31 -0.37 -0.65 16 27 C -0.22 -2.10 8.99 -39.68 -0.36 -2.46 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.35 7.65 -51.93 -0.40 -0.05 16 32 H 0.07 0.35 7.65 -51.93 -0.40 -0.04 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 35 H 0.10 1.54 8.05 -51.93 -0.42 1.12 16 36 H 0.11 1.45 8.03 -51.93 -0.42 1.03 16 37 H 0.09 1.36 7.37 -51.93 -0.38 0.98 16 38 H 0.08 1.54 7.47 -51.93 -0.39 1.16 16 39 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.13 2.59 6.46 -51.93 -0.34 2.26 16 41 H 0.09 1.35 6.68 -51.93 -0.35 1.00 16 42 H 0.14 1.30 7.04 -52.49 -0.37 0.93 16 43 H 0.13 0.94 6.27 -52.49 -0.33 0.62 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -32.41 371.82 -6.67 -39.08 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.40 Total: 3.05 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -2.82 Total: 5.67 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.99 Total: -43.06 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.01 Total: -24.88 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.41 -6.67 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058309679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.504 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds