Wall clock time and date at job start Tue Mar 31 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47132 * 2 1 4 4 C 1.35951 * 116.99633 * 180.02562 * 3 2 1 5 5 C 1.37992 * 120.05580 * 0.18835 * 4 3 2 6 6 C 1.40281 * 119.69550 * 180.25546 * 5 4 3 7 7 C 1.46387 * 120.10576 * 179.78680 * 6 5 4 8 8 C 1.37854 * 119.99832 * 143.06880 * 7 6 5 9 9 C 1.43200 * 119.99322 * 178.75824 * 8 7 6 10 10 N 8.15669 * 161.57258 * 195.09382 * 2 1 3 11 11 C 1.47112 * 120.00447 * 358.48139 * 8 7 6 12 12 O 1.21649 * 120.00258 * 103.31514 * 11 8 7 13 13 N 1.34776 * 120.00014 * 283.31968 * 11 8 7 14 14 C 1.46502 * 120.00296 * 184.86875 * 13 11 8 15 15 C 1.46507 * 120.00060 * 4.87057 * 13 11 8 16 16 C 1.40296 * 119.79463 * 359.50956 * 6 5 4 17 17 C 1.36535 * 120.10346 * 0.27757 * 16 6 5 18 18 C 1.39141 * 120.31363 * 359.97438 * 17 16 6 19 19 O 1.35539 * 119.90142 * 180.02562 * 18 17 16 20 20 C 1.34726 * 117.00122 * 5.49677 * 19 18 17 21 21 H 1.08005 * 119.99480 * 4.60673 * 20 19 18 22 22 C 1.38759 * 120.00295 * 184.60782 * 20 19 18 23 23 N 1.31477 * 120.00050 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99751 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46811 * 90.00414 * 24 22 20 26 26 H 1.48503 * 109.47034 * 210.00210 * 24 22 20 27 27 H 1.48497 * 109.47247 * 330.00371 * 24 22 20 28 28 H 1.09003 * 109.47369 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46678 * 300.00306 * 1 2 3 30 30 H 1.09002 * 109.47276 * 60.00051 * 1 2 3 31 31 H 1.08994 * 109.46815 * 239.99298 * 2 1 3 32 32 H 1.09001 * 109.46862 * 120.00289 * 2 1 3 33 33 H 1.08004 * 120.15560 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.99529 * 323.07413 * 7 6 5 35 35 H 1.09005 * 109.46911 * 59.99885 * 14 13 11 36 36 H 1.08999 * 109.47532 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47021 * 300.00272 * 14 13 11 38 38 H 1.08998 * 109.46927 * 84.85350 * 15 13 11 39 39 H 1.08996 * 109.46943 * 204.85154 * 15 13 11 40 40 H 1.08992 * 109.47005 * 324.85644 * 15 13 11 41 41 H 1.07995 * 119.94749 * 180.25371 * 16 6 5 42 42 H 1.07995 * 119.84144 * 179.97438 * 17 16 6 43 43 H 0.97003 * 119.99740 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5253 -0.0005 5 6 4.1958 0.4317 -0.0050 6 6 5.5853 0.6241 -0.0001 7 6 6.4863 -0.5296 0.0000 8 6 7.6650 -0.4836 -0.7135 9 6 8.5589 -1.6021 -0.6919 10 7 9.2685 -2.4894 -0.6714 11 6 8.0015 0.7120 -1.5019 12 8 8.8250 1.5041 -1.0843 13 7 7.3975 0.9298 -2.6869 14 6 7.8083 2.0616 -3.5214 15 6 6.3300 0.0347 -3.1404 16 6 6.1088 1.9258 -0.0011 17 6 5.2685 3.0019 -0.0012 18 6 3.8895 2.8161 -0.0007 19 8 3.0631 3.8904 -0.0013 20 6 3.6371 5.1037 -0.1173 21 1 4.7019 5.1840 -0.2790 22 6 2.8603 6.2501 -0.0290 23 7 3.4204 7.4341 -0.1427 24 14 1.0185 6.1110 0.2500 25 1 0.7376 6.1080 1.7083 26 1 0.3332 7.2661 -0.3836 27 1 0.5204 4.8485 -0.3526 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.7866 -0.5678 -0.0085 34 1 6.2276 -1.4167 0.5589 35 1 8.8628 1.9599 -3.7781 36 1 7.2117 2.0760 -4.4335 37 1 7.6559 2.9914 -2.9733 38 1 5.3803 0.3562 -2.7130 39 1 6.2679 0.0654 -4.2282 40 1 6.5478 -0.9832 -2.8175 41 1 7.1782 2.0767 -0.0015 42 1 5.6761 4.0020 -0.0016 43 1 2.8774 8.2355 -0.0805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059333748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:07 Heat of formation + Delta-G solvation = -11.982200 kcal Electronic energy + Delta-G solvation = -28285.964162 eV Core-core repulsion = 24299.039709 eV Total energy + Delta-G solvation = -3986.924453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.39869 -39.67336 -38.09300 -36.89595 -36.44317 -35.44769 -33.44348 -32.60191 -31.61107 -29.90413 -28.77276 -27.93247 -26.31877 -25.66128 -23.88952 -23.49584 -21.45804 -21.02650 -20.24689 -18.20537 -18.00973 -17.72318 -16.91458 -16.40287 -15.88403 -15.61115 -15.45697 -15.16748 -14.58999 -14.33703 -14.14075 -13.96598 -13.71758 -13.56323 -13.31760 -12.94171 -12.83194 -12.71193 -12.69754 -12.62784 -12.55066 -12.52106 -12.44137 -12.23557 -11.95929 -11.62683 -11.48468 -11.13307 -10.99002 -10.79146 -10.59032 -10.35575 -9.96625 -9.71051 -9.43101 -9.00389 -8.65017 -8.20717 -7.19678 -6.68523 -4.26260 0.55567 1.93623 2.09453 2.39584 2.72459 3.09961 3.11142 3.14532 3.30979 3.39285 3.55672 4.04794 4.06147 4.20134 4.45816 4.57409 4.85231 5.00036 5.00858 5.06290 5.11675 5.24875 5.29250 5.35733 5.38465 5.45677 5.58841 5.62999 5.69477 5.76359 5.84012 5.84569 5.91135 5.99410 6.05050 6.13907 6.29753 6.45623 6.59846 6.80208 7.04439 7.23425 7.29015 7.41314 7.51061 7.69297 7.90440 8.15198 8.63848 9.25148 10.36507 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.004160 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.657317 B = 6729.475156 C = 8268.366094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.306 6.306 4 C 0.053 3.947 5 C -0.130 4.130 6 C -0.181 4.181 7 C 0.071 3.929 8 C -0.165 4.165 9 C 0.274 3.726 10 N -0.434 5.434 11 C 0.586 3.414 12 O -0.532 6.532 13 N -0.605 5.605 14 C 0.090 3.910 15 C 0.079 3.921 16 C -0.060 4.060 17 C -0.207 4.207 18 C 0.159 3.841 19 O -0.181 6.181 20 C -0.386 4.386 21 H 0.113 0.887 22 C 0.069 3.931 23 N -0.857 5.857 24 Si 0.904 3.096 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.252 1.252 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -14.225 -4.330 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.221 6.221 4 C 0.008 3.992 5 C -0.149 4.149 6 C -0.182 4.182 7 C 0.048 3.952 8 C -0.172 4.172 9 C -0.040 4.040 10 N -0.110 5.110 11 C 0.373 3.627 12 O -0.410 6.410 13 N -0.338 5.338 14 C -0.053 4.053 15 C -0.064 4.064 16 C -0.078 4.078 17 C -0.226 4.226 18 C 0.103 3.897 19 O -0.083 6.083 20 C -0.460 4.460 21 H 0.130 0.870 22 C -0.138 4.138 23 N -0.492 5.492 24 Si 0.728 3.272 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.176 1.176 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.224 -14.659 -4.123 15.277 hybrid contribution -0.867 0.300 0.155 0.930 sum -2.091 -14.359 -3.968 15.043 Atomic orbital electron populations 1.21750 0.93379 1.02150 1.03602 1.22641 0.95535 0.83173 1.00645 1.86188 1.18596 1.27488 1.89856 1.17904 0.82470 0.91149 1.07705 1.20771 0.92172 0.96711 1.05249 1.18044 0.91812 0.91906 1.16467 1.22723 0.88172 0.96257 0.88088 1.17726 0.96673 0.92638 1.10137 1.25179 0.92958 0.92425 0.93424 1.81233 1.09023 1.11400 1.09391 1.17545 0.80273 0.84660 0.80192 1.90830 1.34370 1.46632 1.69123 1.47566 1.37336 1.29705 1.19167 1.21678 1.00149 0.89071 0.94382 1.21877 0.90600 0.93802 1.00166 1.21292 1.00438 0.90953 0.95129 1.20697 0.91278 1.00484 1.10180 1.18732 0.89345 0.85309 0.96292 1.83558 1.34648 1.13606 1.76460 1.20976 0.96376 0.78984 1.49699 0.86997 1.24554 1.00786 0.93391 0.95101 1.69606 1.37626 0.97574 1.44357 0.86179 0.82518 0.79025 0.79447 1.19557 1.20484 1.17570 0.90896 0.91638 0.91612 0.92630 0.92630 0.85570 0.84610 0.92263 0.90538 0.91314 0.91508 0.91011 0.91283 0.84947 0.83961 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.15 16 2 C 0.06 0.66 5.46 37.16 0.20 0.86 16 3 O -0.31 -5.35 9.92 -34.12 -0.34 -5.69 16 4 C 0.05 0.94 6.70 -39.11 -0.26 0.67 16 5 C -0.13 -1.81 8.79 -38.90 -0.34 -2.15 16 6 C -0.18 -2.57 4.47 -105.08 -0.47 -3.04 16 7 C 0.07 0.82 9.22 -36.45 -0.34 0.49 16 8 C -0.16 -2.16 3.94 -104.51 -0.41 -2.57 16 9 C 0.27 3.81 15.36 -22.46 -0.34 3.47 16 10 N -0.43 -6.69 18.54 41.85 0.78 -5.91 16 11 C 0.59 8.80 4.13 -12.66 -0.05 8.75 16 12 O -0.53 -9.79 15.55 5.23 0.08 -9.70 16 13 N -0.61 -7.66 3.24 -190.92 -0.62 -8.28 16 14 C 0.09 1.03 10.17 59.85 0.61 1.64 16 15 C 0.08 0.76 9.54 59.85 0.57 1.33 16 16 C -0.06 -1.02 8.25 -39.42 -0.33 -1.34 16 17 C -0.21 -4.08 9.06 -39.86 -0.36 -4.45 16 18 C 0.16 3.35 6.68 -38.68 -0.26 3.09 16 19 O -0.18 -4.44 8.35 -13.54 -0.11 -4.55 16 20 C -0.39 -10.04 9.91 30.93 0.31 -9.73 16 21 H 0.11 2.96 5.48 -52.48 -0.29 2.68 16 22 C 0.07 1.79 5.50 -17.51 -0.10 1.69 16 23 N -0.86 -23.05 13.96 55.48 0.77 -22.27 16 24 Si 0.90 20.30 28.62 -169.99 -4.86 15.43 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.25 -5.75 7.11 56.52 0.40 -5.35 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 32 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 33 H 0.13 1.33 6.29 -52.48 -0.33 1.00 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.71 7.50 -51.93 -0.39 0.32 16 39 H 0.07 0.54 7.81 -51.93 -0.41 0.13 16 40 H 0.07 0.60 6.99 -51.93 -0.36 0.24 16 41 H 0.13 2.36 4.98 -52.49 -0.26 2.10 16 42 H 0.14 3.01 5.67 -52.49 -0.30 2.71 16 43 H 0.29 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -30.69 371.81 -5.09 -35.78 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.20 Total: 2.04 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.19 Total: -2.45 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.93 Total: -36.46 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.37 Total: -19.94 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.86 Total: 15.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.69 -5.09 -35.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059333748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.797 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds