Wall clock time and date at job start Tue Mar 31 2020 05:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81398 * 109.46868 * 2 1 4 4 O 1.42096 * 110.54395 * 68.37116 * 3 2 1 5 5 O 1.42102 * 110.54164 * 291.61785 * 3 2 1 6 6 N 1.65600 * 104.45005 * 179.97438 * 3 2 1 7 7 C 1.46934 * 120.62973 * 269.97808 * 6 3 2 8 8 C 1.53184 * 108.77341 * 233.62955 * 7 6 3 9 9 C 1.53048 * 109.31404 * 305.36270 * 8 7 6 10 10 C 1.53039 * 109.53636 * 61.36299 * 9 8 7 11 11 H 1.09011 * 109.49489 * 58.59382 * 10 9 8 12 12 C 1.50697 * 109.49502 * 178.68022 * 10 9 8 13 13 O 1.21300 * 119.99707 * 119.84091 * 12 10 9 14 14 N 1.34776 * 120.00479 * 299.84444 * 12 10 9 15 15 C 1.37100 * 119.99724 * 179.97438 * 14 12 10 16 16 H 1.07994 * 119.99788 * 222.93393 * 15 14 12 17 17 C 1.38957 * 119.99928 * 42.94078 * 15 14 12 18 18 N 1.31410 * 119.99864 * 18.93442 * 17 15 14 19 19 Si 1.86798 * 119.99581 * 198.93538 * 17 15 14 20 20 H 1.48496 * 109.47034 * 60.00134 * 19 17 15 21 21 H 1.48506 * 109.46909 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47357 * 299.99912 * 19 17 15 23 23 C 1.46494 * 119.99951 * 359.97438 * 14 12 10 24 24 C 1.52998 * 117.49593 * 187.99843 * 23 14 12 25 25 C 1.52999 * 117.49796 * 119.33702 * 23 14 12 26 26 C 1.46922 * 120.63397 * 89.99466 * 6 3 2 27 27 H 1.08995 * 109.47277 * 300.00207 * 1 2 3 28 28 H 1.09003 * 109.46738 * 60.00955 * 1 2 3 29 29 H 1.09007 * 109.46753 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47277 * 239.99793 * 2 1 3 31 31 H 1.09003 * 109.46738 * 119.99045 * 2 1 3 32 32 H 1.09005 * 109.58207 * 353.41501 * 7 6 3 33 33 H 1.08999 * 109.58295 * 113.69382 * 7 6 3 34 34 H 1.08999 * 109.50387 * 65.31241 * 8 7 6 35 35 H 1.09003 * 109.49676 * 185.41393 * 8 7 6 36 36 H 1.08996 * 109.45728 * 301.34831 * 9 8 7 37 37 H 1.09002 * 109.46000 * 181.38537 * 9 8 7 38 38 H 0.97001 * 119.99517 * 174.91515 * 18 17 15 39 39 H 1.08994 * 115.55001 * 333.66407 * 23 14 12 40 40 H 1.08993 * 117.50346 * 359.97438 * 24 23 14 41 41 H 1.09008 * 117.49670 * 145.02283 * 24 23 14 42 42 H 1.09000 * 117.49355 * 214.97387 * 25 23 14 43 43 H 1.08997 * 117.50071 * 359.97313 * 25 23 14 44 44 H 1.09000 * 109.58193 * 6.58531 * 26 6 3 45 45 H 1.09001 * 109.59222 * 246.16025 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3439 1.2369 5 8 1.8386 2.3438 -1.2371 6 7 3.7843 1.5654 0.0007 7 6 4.5295 1.5006 1.2654 8 6 5.6191 2.5772 1.2512 9 6 6.4855 2.4042 0.0015 10 6 5.6202 2.5762 -1.2489 11 1 5.1568 3.5628 -1.2378 12 6 6.4803 2.4378 -2.4786 13 8 6.2460 1.5646 -3.2874 14 7 7.5098 3.2840 -2.6798 15 6 8.2925 3.1577 -3.7983 16 1 9.3659 3.2450 -3.7188 17 6 7.7045 2.9173 -5.0342 18 7 6.4287 3.1744 -5.2159 19 14 8.7278 2.2286 -6.4370 20 1 9.2851 0.9100 -6.0423 21 1 7.8719 2.0638 -7.6395 22 1 9.8394 3.1639 -6.7445 23 6 7.7924 4.3389 -1.7033 24 6 8.8497 5.3805 -2.0748 25 6 9.1597 4.3183 -1.0170 26 6 4.5306 1.4996 -1.2631 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.8504 1.6789 2.0992 33 1 4.9864 0.5165 1.3702 34 1 5.1558 3.5637 1.2389 35 1 6.2405 2.4777 2.1413 36 1 6.9289 1.4084 0.0021 37 1 7.2768 3.1538 0.0016 38 1 6.0351 3.0768 -6.0971 39 1 6.9390 4.6757 -1.1149 40 1 9.3352 5.2807 -3.0455 41 1 8.6920 6.4026 -1.7303 42 1 9.2057 4.6421 0.0228 43 1 9.8487 3.5197 -1.2917 44 1 3.8522 1.6772 -2.0976 45 1 4.9897 0.5163 -1.3657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:38 Heat of formation + Delta-G solvation = -64.150111 kcal Electronic energy + Delta-G solvation = -28213.351949 eV Core-core repulsion = 24359.609277 eV Total energy + Delta-G solvation = -3853.742672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -39.38436 -37.48424 -37.10683 -35.98756 -35.87391 -33.31060 -32.87146 -32.36291 -31.01292 -30.43163 -25.43436 -24.65370 -23.89588 -23.22243 -21.69095 -21.31075 -20.49806 -19.08862 -18.60908 -17.74215 -16.54902 -16.27314 -16.08974 -16.03891 -14.94888 -14.79930 -14.52790 -14.21712 -13.98137 -13.91315 -13.76600 -13.48713 -13.26152 -13.03227 -12.67703 -12.51386 -12.44335 -12.05672 -12.03798 -11.86534 -11.76914 -11.69652 -11.24456 -10.96451 -10.86000 -10.81801 -10.76886 -10.66664 -10.61968 -10.51578 -10.24683 -10.07236 -9.86021 -9.64733 -8.85277 -8.67157 -7.92960 -6.99385 -6.07719 -3.82911 0.23866 2.65554 3.31865 3.39228 3.41676 3.84664 4.08469 4.11919 4.28159 4.40939 4.61997 4.71921 4.81051 4.87702 4.96903 5.09419 5.19197 5.27663 5.34991 5.44076 5.49131 5.49574 5.58137 5.59707 5.64458 5.69230 5.77806 5.83414 5.95736 6.06597 6.10641 6.16765 6.22156 6.27644 6.45270 6.48243 6.58341 6.65674 6.78460 6.78854 6.96080 7.63998 8.29129 9.08738 9.17888 9.69239 10.31583 11.01146 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.004195 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.806898 B = 6673.337662 C = 7843.633092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.605 3.395 4 O -0.960 6.960 5 O -0.946 6.946 6 N -1.000 6.000 7 C 0.117 3.883 8 C -0.128 4.128 9 C -0.119 4.119 10 C -0.111 4.111 11 H 0.083 0.917 12 C 0.490 3.510 13 O -0.534 6.534 14 N -0.424 5.424 15 C -0.352 4.352 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.829 5.829 19 Si 0.912 3.088 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.077 3.923 24 C -0.178 4.178 25 C -0.207 4.207 26 C 0.142 3.858 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.265 0.735 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -3.932 14.233 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.699 3.301 4 O -0.950 6.950 5 O -0.936 6.936 6 N -0.838 5.838 7 C -0.008 4.008 8 C -0.167 4.167 9 C -0.156 4.156 10 C -0.134 4.134 11 H 0.101 0.899 12 C 0.277 3.723 13 O -0.411 6.411 14 N -0.144 5.144 15 C -0.479 4.479 16 H 0.094 0.906 17 C -0.137 4.137 18 N -0.462 5.462 19 Si 0.740 3.260 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.205 1.205 23 C -0.029 4.029 24 C -0.215 4.215 25 C -0.247 4.247 26 C 0.017 3.983 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.511 -3.686 13.661 15.576 hybrid contribution 0.646 -0.893 -0.734 1.324 sum -5.865 -4.579 12.927 14.916 Atomic orbital electron populations 1.21498 0.90789 1.04839 1.03375 1.30600 1.06936 1.27374 1.11572 1.05174 0.73221 0.77429 0.74308 1.93558 1.83511 1.72474 1.45500 1.93634 1.83112 1.72090 1.44806 1.57726 1.23820 1.89607 1.12628 1.21461 0.95037 0.99564 0.84737 1.21859 0.97071 0.99239 0.98579 1.21734 0.98037 1.03326 0.92530 1.21472 0.96288 1.00113 0.95573 0.89902 1.19530 0.83288 0.83130 0.86354 1.90524 1.69542 1.35077 1.46004 1.42724 1.28904 1.24058 1.18739 1.18793 0.89728 1.54722 0.84616 0.90559 1.25211 0.95211 0.95168 0.98070 1.69828 1.11951 1.41599 1.22860 0.86284 0.79353 0.79854 0.80546 1.20041 1.21233 1.20469 1.21725 0.91279 0.93948 0.95950 1.23127 1.04348 0.93608 1.00463 1.23331 1.02048 1.02737 0.96541 1.21251 0.94407 0.99467 0.83185 0.91138 0.90898 0.90204 0.84878 0.85314 0.89325 0.91559 0.91424 0.90862 0.91722 0.89695 0.92486 0.87736 0.87499 0.89904 0.89837 0.89055 0.88319 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.92 37.16 0.37 -0.88 16 2 C -0.64 -5.92 6.90 37.16 0.26 -5.66 16 3 S 2.61 35.06 5.45 -107.50 -0.59 34.47 16 4 O -0.96 -14.43 16.58 -57.54 -0.95 -15.39 16 5 O -0.95 -16.74 16.59 -57.54 -0.95 -17.69 16 6 N -1.00 -13.77 3.22 -113.52 -0.37 -14.13 16 7 C 0.12 1.33 6.43 -3.71 -0.02 1.31 16 8 C -0.13 -1.54 6.08 -26.61 -0.16 -1.71 16 9 C -0.12 -1.79 4.80 -26.69 -0.13 -1.92 16 10 C -0.11 -2.11 1.88 -91.66 -0.17 -2.28 16 11 H 0.08 1.62 7.57 -51.92 -0.39 1.22 16 12 C 0.49 12.07 6.37 -10.99 -0.07 12.00 16 13 O -0.53 -15.20 13.58 5.54 0.08 -15.12 16 14 N -0.42 -10.36 2.85 -107.74 -0.31 -10.66 16 15 C -0.35 -9.46 7.82 -14.93 -0.12 -9.58 16 16 H 0.08 1.98 7.41 -52.49 -0.39 1.60 16 17 C 0.07 2.08 4.36 -17.47 -0.08 2.00 16 18 N -0.83 -24.62 11.66 55.50 0.65 -23.97 16 19 Si 0.91 21.86 29.60 -169.99 -5.03 16.83 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.08 1.51 4.31 -67.94 -0.29 1.22 16 24 C -0.18 -3.18 9.81 -26.69 -0.26 -3.44 16 25 C -0.21 -3.41 9.39 -26.69 -0.25 -3.66 16 26 C 0.14 2.46 5.06 -3.72 -0.02 2.44 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.09 0.90 6.86 -51.93 -0.36 0.54 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.28 4.38 -51.93 -0.23 1.06 16 38 H 0.27 7.58 8.32 -40.82 -0.34 7.24 16 39 H 0.11 1.87 6.24 -51.93 -0.32 1.55 16 40 H 0.11 2.14 6.84 -51.93 -0.36 1.78 16 41 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 44 H 0.10 1.92 6.86 -51.93 -0.36 1.56 16 45 H 0.08 1.28 7.96 -51.93 -0.41 0.86 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -35.78 364.12 -9.96 -45.73 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.02 Total: 4.60 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.95 Total: -10.15 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.03 Total: -48.77 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -1.83 Total: -48.20 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 35.06 SS G_CDS: -0.59 Total: 34.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.78 -9.96 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.415 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds