Wall clock time and date at job start Tue Mar 31 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81398 * 109.46868 * 2 1 4 4 O 1.42096 * 110.54395 * 68.37116 * 3 2 1 5 5 O 1.42102 * 110.54164 * 291.61785 * 3 2 1 6 6 N 1.65600 * 104.45005 * 179.97438 * 3 2 1 7 7 C 1.46934 * 120.62973 * 269.97808 * 6 3 2 8 8 C 1.53184 * 108.77341 * 233.62955 * 7 6 3 9 9 C 1.53048 * 109.31404 * 305.36270 * 8 7 6 10 10 C 1.53039 * 109.53636 * 61.36299 * 9 8 7 11 11 H 1.09011 * 109.49489 * 58.59382 * 10 9 8 12 12 C 1.50697 * 109.49502 * 178.68022 * 10 9 8 13 13 O 1.21300 * 119.99707 * 119.84091 * 12 10 9 14 14 N 1.34776 * 120.00479 * 299.84444 * 12 10 9 15 15 C 1.37100 * 119.99724 * 179.97438 * 14 12 10 16 16 H 1.07994 * 119.99788 * 222.93393 * 15 14 12 17 17 C 1.38957 * 119.99928 * 42.94078 * 15 14 12 18 18 N 1.31410 * 119.99864 * 18.93442 * 17 15 14 19 19 Si 1.86798 * 119.99581 * 198.93538 * 17 15 14 20 20 H 1.48496 * 109.47034 * 60.00134 * 19 17 15 21 21 H 1.48506 * 109.46909 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47357 * 299.99912 * 19 17 15 23 23 C 1.46494 * 119.99951 * 359.97438 * 14 12 10 24 24 C 1.52998 * 117.49593 * 187.99843 * 23 14 12 25 25 C 1.52999 * 117.49796 * 119.33702 * 23 14 12 26 26 C 1.46922 * 120.63397 * 89.99466 * 6 3 2 27 27 H 1.08995 * 109.47277 * 300.00207 * 1 2 3 28 28 H 1.09003 * 109.46738 * 60.00955 * 1 2 3 29 29 H 1.09007 * 109.46753 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47277 * 239.99793 * 2 1 3 31 31 H 1.09003 * 109.46738 * 119.99045 * 2 1 3 32 32 H 1.09005 * 109.58207 * 353.41501 * 7 6 3 33 33 H 1.08999 * 109.58295 * 113.69382 * 7 6 3 34 34 H 1.08999 * 109.50387 * 65.31241 * 8 7 6 35 35 H 1.09003 * 109.49676 * 185.41393 * 8 7 6 36 36 H 1.08996 * 109.45728 * 301.34831 * 9 8 7 37 37 H 1.09002 * 109.46000 * 181.38537 * 9 8 7 38 38 H 0.97001 * 119.99517 * 174.91515 * 18 17 15 39 39 H 1.08994 * 115.55001 * 333.66407 * 23 14 12 40 40 H 1.08993 * 117.50346 * 359.97438 * 24 23 14 41 41 H 1.09008 * 117.49670 * 145.02283 * 24 23 14 42 42 H 1.09000 * 117.49355 * 214.97387 * 25 23 14 43 43 H 1.08997 * 117.50071 * 359.97313 * 25 23 14 44 44 H 1.09000 * 109.58193 * 6.58531 * 26 6 3 45 45 H 1.09001 * 109.59222 * 246.16025 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3439 1.2369 5 8 1.8386 2.3438 -1.2371 6 7 3.7843 1.5654 0.0007 7 6 4.5295 1.5006 1.2654 8 6 5.6191 2.5772 1.2512 9 6 6.4855 2.4042 0.0015 10 6 5.6202 2.5762 -1.2489 11 1 5.1568 3.5628 -1.2378 12 6 6.4803 2.4378 -2.4786 13 8 6.2460 1.5646 -3.2874 14 7 7.5098 3.2840 -2.6798 15 6 8.2925 3.1577 -3.7983 16 1 9.3659 3.2450 -3.7188 17 6 7.7045 2.9173 -5.0342 18 7 6.4287 3.1744 -5.2159 19 14 8.7278 2.2286 -6.4370 20 1 9.2851 0.9100 -6.0423 21 1 7.8719 2.0638 -7.6395 22 1 9.8394 3.1639 -6.7445 23 6 7.7924 4.3389 -1.7033 24 6 8.8497 5.3805 -2.0748 25 6 9.1597 4.3183 -1.0170 26 6 4.5306 1.4996 -1.2631 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.8504 1.6789 2.0992 33 1 4.9864 0.5165 1.3702 34 1 5.1558 3.5637 1.2389 35 1 6.2405 2.4777 2.1413 36 1 6.9289 1.4084 0.0021 37 1 7.2768 3.1538 0.0016 38 1 6.0351 3.0768 -6.0971 39 1 6.9390 4.6757 -1.1149 40 1 9.3352 5.2807 -3.0455 41 1 8.6920 6.4026 -1.7303 42 1 9.2057 4.6421 0.0228 43 1 9.8487 3.5197 -1.2917 44 1 3.8522 1.6772 -2.0976 45 1 4.9897 0.5163 -1.3657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:37 Heat of formation + Delta-G solvation = -90.047101 kcal Electronic energy + Delta-G solvation = -28214.474927 eV Core-core repulsion = 24359.609277 eV Total energy + Delta-G solvation = -3854.865650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98249 -38.83496 -38.27448 -37.67339 -37.04273 -34.78840 -34.04799 -33.68875 -32.62051 -31.92476 -27.31429 -25.70015 -24.84820 -24.62874 -23.08745 -22.81526 -21.84344 -20.77771 -19.73027 -18.93509 -18.08875 -17.78870 -17.42757 -17.22506 -16.70617 -16.16044 -15.81578 -15.64192 -15.29186 -15.17413 -14.96713 -14.79977 -14.58202 -14.13830 -14.03133 -13.71592 -13.67794 -13.42676 -13.23599 -13.14910 -12.99193 -12.94178 -12.77495 -12.64127 -12.44057 -12.28790 -12.21300 -12.07090 -11.97374 -11.83766 -11.63901 -11.45764 -11.26368 -11.13676 -10.67976 -10.01592 -9.75107 -8.92726 -8.17219 -5.94868 -0.78032 1.36852 1.45324 1.49018 1.58506 2.27098 2.42859 2.85846 3.03267 3.13569 3.18797 3.37667 3.56748 3.75127 3.84893 3.97656 3.99769 4.11915 4.18242 4.20278 4.32146 4.35318 4.39073 4.46670 4.56965 4.65143 4.67140 4.81365 4.85081 4.89526 4.91566 5.04589 5.04809 5.06955 5.11146 5.26878 5.30600 5.34508 5.49108 5.49919 5.51307 5.63816 6.21960 7.06349 7.23133 7.73812 8.39558 8.91306 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.004195 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.806898 B = 6673.337662 C = 7843.633092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.607 4.607 3 S 2.599 3.401 4 O -0.979 6.979 5 O -1.002 7.002 6 N -0.999 5.999 7 C 0.107 3.893 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.104 4.104 11 H 0.070 0.930 12 C 0.475 3.525 13 O -0.585 6.585 14 N -0.440 5.440 15 C -0.357 4.357 16 H 0.080 0.920 17 C 0.021 3.979 18 N -0.873 5.873 19 Si 0.970 3.030 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.258 1.258 23 C 0.047 3.953 24 C -0.179 4.179 25 C -0.171 4.171 26 C 0.153 3.847 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.143 0.857 31 H 0.164 0.836 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.258 0.742 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -4.794 17.386 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.740 4.740 3 S 2.698 3.302 4 O -0.970 6.970 5 O -0.993 6.993 6 N -0.836 5.836 7 C -0.017 4.017 8 C -0.164 4.164 9 C -0.147 4.147 10 C -0.128 4.128 11 H 0.089 0.911 12 C 0.263 3.737 13 O -0.467 6.467 14 N -0.160 5.160 15 C -0.484 4.484 16 H 0.097 0.903 17 C -0.185 4.185 18 N -0.508 5.508 19 Si 0.796 3.204 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.182 1.182 23 C -0.058 4.058 24 C -0.217 4.217 25 C -0.210 4.210 26 C 0.027 3.973 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.145 0.855 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.685 -4.460 16.860 18.343 hybrid contribution 0.401 -0.641 -1.623 1.791 sum -5.284 -5.101 15.236 16.914 Atomic orbital electron populations 1.21707 0.89901 1.06634 1.03624 1.30341 1.07543 1.22274 1.13869 1.05173 0.72949 0.79267 0.72813 1.93522 1.83534 1.74430 1.45480 1.93568 1.83761 1.75004 1.46940 1.57581 1.23836 1.90105 1.12117 1.21804 0.95214 1.00865 0.83792 1.21885 0.97205 0.99176 0.98087 1.21685 0.97857 1.03360 0.91822 1.21405 0.96406 0.99972 0.94979 0.91131 1.20501 0.83481 0.82321 0.87366 1.90471 1.70990 1.37157 1.48065 1.42948 1.28692 1.25319 1.19004 1.19078 0.90256 1.53542 0.85530 0.90273 1.26048 0.96121 0.95561 1.00754 1.69965 1.13837 1.44130 1.22881 0.85370 0.78341 0.79155 0.77575 1.20463 1.21630 1.18203 1.21972 0.93356 0.94065 0.96410 1.23181 1.03087 0.95341 1.00100 1.23336 0.98355 1.01051 0.98243 1.20867 0.93492 0.98838 0.84099 0.90224 0.91661 0.87491 0.83919 0.81806 0.87529 0.88860 0.92157 0.87208 0.91698 0.89496 0.93264 0.86253 0.90200 0.86860 0.85533 0.90354 0.91571 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.92 71.98 0.71 -1.61 16 2 C -0.61 -9.69 6.90 71.98 0.50 -9.20 16 3 S 2.60 68.83 5.45 -56.49 -0.31 68.52 16 4 O -0.98 -28.36 16.58 -127.65 -2.12 -30.48 16 5 O -1.00 -37.32 16.59 -127.65 -2.12 -39.44 16 6 N -1.00 -26.64 3.22 -513.08 -1.65 -28.29 16 7 C 0.11 2.11 6.43 86.36 0.56 2.67 16 8 C -0.12 -2.61 6.08 30.67 0.19 -2.43 16 9 C -0.11 -3.13 4.80 30.62 0.15 -2.98 16 10 C -0.10 -4.05 1.88 -11.47 -0.02 -4.07 16 11 H 0.07 2.87 7.57 -2.38 -0.02 2.85 16 12 C 0.47 24.28 6.37 87.66 0.56 24.84 16 13 O -0.59 -35.10 13.58 -3.09 -0.04 -35.15 16 14 N -0.44 -21.99 2.85 -613.15 -1.75 -23.74 16 15 C -0.36 -19.67 7.82 84.04 0.66 -19.02 16 16 H 0.08 4.19 7.41 -2.91 -0.02 4.17 16 17 C 0.02 1.23 4.36 84.93 0.37 1.60 16 18 N -0.87 -54.47 11.66 21.67 0.25 -54.22 16 19 Si 0.97 46.21 29.60 68.60 2.03 48.24 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 C 0.05 1.80 4.31 44.99 0.19 1.99 16 24 C -0.18 -6.16 9.81 30.62 0.30 -5.86 16 25 C -0.17 -5.17 9.39 30.62 0.29 -4.89 16 26 C 0.15 5.48 5.06 86.36 0.44 5.92 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 1.78 6.86 -2.38 -0.02 1.76 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 2.43 4.38 -2.39 -0.01 2.42 16 38 H 0.26 15.64 8.32 -92.71 -0.77 14.87 16 39 H 0.12 4.16 6.24 -2.39 -0.01 4.15 16 40 H 0.08 3.19 6.84 -2.39 -0.02 3.18 16 41 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 42 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.07 2.78 6.86 -2.39 -0.02 2.76 16 45 H 0.08 2.68 7.96 -2.39 -0.02 2.67 16 Total: -1.00 -83.86 364.12 0.16 -83.70 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.98 Total: 23.89 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.88 Total: -13.03 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.15 Total: -106.25 kcal Atomic # 8 Polarization: -100.79 SS G_CDS: -4.28 Total: -105.06 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 68.83 SS G_CDS: -0.31 Total: 68.52 kcal Total: -83.86 0.16 -83.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.348 kcal (2) G-P(sol) polarization free energy of solvation -83.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds