Wall clock time and date at job start Tue Mar 31 2020 05:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81405 * 109.46952 * 2 1 4 4 O 1.42096 * 110.54246 * 68.37795 * 3 2 1 5 5 O 1.42099 * 110.54202 * 291.62417 * 3 2 1 6 6 N 1.65599 * 104.44788 * 180.02562 * 3 2 1 7 7 C 1.46929 * 120.63344 * 89.99768 * 6 3 2 8 8 C 1.53190 * 108.77627 * 126.37092 * 7 6 3 9 9 C 1.53042 * 109.31464 * 54.63446 * 8 7 6 10 10 C 1.50696 * 109.45989 * 178.61633 * 9 8 7 11 11 O 1.21295 * 120.00101 * 9.43199 * 10 9 8 12 12 N 1.34775 * 119.99736 * 189.43796 * 10 9 8 13 13 C 1.37104 * 119.99788 * 184.72302 * 12 10 9 14 14 H 1.08002 * 119.99859 * 331.96804 * 13 12 10 15 15 C 1.38945 * 120.00056 * 151.97219 * 13 12 10 16 16 N 1.31410 * 120.00168 * 348.30744 * 15 13 12 17 17 Si 1.86797 * 119.99888 * 168.30543 * 15 13 12 18 18 H 1.48506 * 109.47161 * 90.00060 * 17 15 13 19 19 H 1.48501 * 109.46886 * 209.99657 * 17 15 13 20 20 H 1.48492 * 109.47426 * 329.99980 * 17 15 13 21 21 C 1.46494 * 120.00406 * 4.71938 * 12 10 9 22 22 C 1.52999 * 117.50244 * 135.22018 * 21 12 10 23 23 C 1.52999 * 117.49991 * 66.59584 * 21 12 10 24 24 C 1.53035 * 109.53573 * 298.63784 * 9 8 7 25 25 C 1.46929 * 120.62935 * 269.98003 * 6 3 2 26 26 H 1.09000 * 109.47114 * 299.99985 * 1 2 3 27 27 H 1.09006 * 109.47526 * 60.00125 * 1 2 3 28 28 H 1.08996 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47114 * 240.00015 * 2 1 3 30 30 H 1.08999 * 109.46960 * 119.99516 * 2 1 3 31 31 H 1.09005 * 109.58577 * 6.58320 * 7 6 3 32 32 H 1.08999 * 109.70460 * 246.23156 * 7 6 3 33 33 H 1.09001 * 109.49413 * 294.68266 * 8 7 6 34 34 H 1.08999 * 109.49786 * 174.59344 * 8 7 6 35 35 H 1.09002 * 109.45621 * 58.65715 * 9 8 7 36 36 H 0.96996 * 120.00657 * 185.05773 * 16 15 13 37 37 H 1.09001 * 115.54600 * 280.92983 * 21 12 10 38 38 H 1.08997 * 117.49740 * 359.97438 * 22 21 12 39 39 H 1.08999 * 117.49853 * 145.02503 * 22 21 12 40 40 H 1.09005 * 117.50052 * 214.98386 * 23 21 12 41 41 H 1.09003 * 117.49665 * 359.97438 * 23 21 12 42 42 H 1.09004 * 109.49781 * 181.31228 * 24 9 8 43 43 H 1.09000 * 109.50094 * 301.40965 * 24 9 8 44 44 H 1.08999 * 109.58693 * 353.40981 * 25 6 3 45 45 H 1.08995 * 109.58665 * 113.84510 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.5295 1.5000 -1.2653 8 6 5.6192 2.5766 -1.2516 9 6 6.4856 2.4041 -0.0019 10 6 7.5796 3.4405 -0.0024 11 8 7.5610 4.3415 -0.8142 12 7 8.5787 3.3661 0.8991 13 6 9.5204 4.3605 0.9622 14 1 9.7595 4.9346 0.0792 15 6 10.1672 4.6296 2.1621 16 7 9.7243 4.1005 3.2804 17 14 11.6665 5.7437 2.1856 18 1 11.2351 7.1500 2.3893 19 1 12.5679 5.3370 3.2934 20 1 12.3882 5.6297 0.8929 21 6 8.6584 2.2228 1.8115 22 6 10.0295 1.5746 2.0139 23 6 8.9537 0.8512 1.2013 24 6 5.6202 2.5768 1.2485 25 6 4.5305 1.5001 1.2633 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8505 1.6779 -2.0992 32 1 4.9883 0.5169 -1.3711 33 1 5.1558 3.5631 -1.2398 34 1 6.2405 2.4767 -2.1417 35 1 6.9289 1.4083 -0.0020 36 1 10.1295 4.3456 4.1269 37 1 7.9865 2.2581 2.6691 38 1 10.8721 1.9986 1.4677 39 1 10.2599 1.1834 3.0048 40 1 8.4764 -0.0161 1.6577 41 1 9.0882 0.7994 0.1209 42 1 6.2423 2.4769 2.1380 43 1 5.1568 3.5633 1.2369 44 1 3.8522 1.6782 2.0977 45 1 4.9896 0.5169 1.3661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:35 Heat of formation + Delta-G solvation = -72.945351 kcal Electronic energy + Delta-G solvation = -27927.148971 eV Core-core repulsion = 24073.024908 eV Total energy + Delta-G solvation = -3854.124063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.45706 -37.57020 -37.22482 -36.06152 -35.96394 -33.43171 -33.06119 -32.16832 -31.14880 -30.70420 -25.95796 -24.47190 -23.95115 -23.10113 -21.87094 -21.34090 -20.43425 -19.03104 -18.56508 -17.62607 -16.88251 -16.54465 -16.30135 -15.86837 -15.09858 -15.01106 -14.49624 -14.25987 -14.21811 -14.12340 -13.88596 -13.46538 -13.32394 -13.19072 -12.81948 -12.70502 -12.21801 -12.14473 -12.09809 -12.00740 -11.88865 -11.73446 -11.39298 -11.10935 -11.01302 -10.85745 -10.80817 -10.72419 -10.50710 -10.38897 -10.23504 -10.18642 -9.69367 -9.38432 -9.01711 -8.81474 -8.22993 -7.60426 -6.27845 -3.85933 0.11708 2.55088 3.18349 3.26619 3.31261 3.75193 3.89695 3.96571 4.14188 4.28718 4.51176 4.66119 4.68863 4.77626 4.85971 5.07359 5.14925 5.23470 5.32014 5.35659 5.38726 5.43504 5.54475 5.55216 5.64810 5.75822 5.83455 5.86760 5.92022 6.06124 6.10175 6.19521 6.22129 6.36654 6.45439 6.55860 6.71132 6.75978 6.79551 6.92410 7.15709 7.61942 8.20455 8.53608 9.22912 9.46038 10.03167 10.78827 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.003247 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.222993 B = 8620.360515 C = 8811.852250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.636 4.636 3 S 2.606 3.394 4 O -0.953 6.953 5 O -0.954 6.954 6 N -0.997 5.997 7 C 0.119 3.881 8 C -0.108 4.108 9 C -0.097 4.097 10 C 0.464 3.536 11 O -0.584 6.584 12 N -0.423 5.423 13 C -0.313 4.313 14 H 0.094 0.906 15 C 0.042 3.958 16 N -0.872 5.872 17 Si 0.917 3.083 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.133 3.867 22 C -0.139 4.139 23 C -0.226 4.226 24 C -0.120 4.120 25 C 0.121 3.879 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.266 0.734 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 -13.989 -2.451 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.699 3.301 4 O -0.943 6.943 5 O -0.944 6.944 6 N -0.836 5.836 7 C -0.006 4.006 8 C -0.147 4.147 9 C -0.119 4.119 10 C 0.252 3.748 11 O -0.468 6.468 12 N -0.141 5.141 13 C -0.441 4.441 14 H 0.111 0.889 15 C -0.162 4.162 16 N -0.510 5.510 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.027 3.973 22 C -0.176 4.176 23 C -0.264 4.264 24 C -0.160 4.160 25 C -0.004 4.004 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.876 -12.788 -2.641 18.338 hybrid contribution 1.092 -0.275 0.350 1.179 sum -11.784 -13.063 -2.291 17.742 Atomic orbital electron populations 1.21497 0.90781 1.04842 1.03432 1.30608 1.06958 1.27400 1.11458 1.05177 0.73205 0.77354 0.74352 1.93592 1.83305 1.72224 1.45187 1.93587 1.83336 1.72251 1.45234 1.57676 1.23712 1.89607 1.12594 1.21551 0.95088 0.99652 0.84351 1.21616 0.96006 0.99210 0.97882 1.21146 0.95178 0.99910 0.95618 1.20015 0.82909 0.87321 0.84514 1.90518 1.77642 1.37943 1.40700 1.43046 1.22959 1.17724 1.30386 1.19489 1.15207 1.12859 0.96540 0.88850 1.25239 0.98980 0.97257 0.94753 1.69848 1.41013 1.42562 0.97553 0.86067 0.81406 0.80189 0.77901 1.20410 1.20916 1.19572 1.21056 0.99763 0.82672 0.93784 1.22677 0.93841 1.01708 0.99391 1.23544 1.06728 0.96705 0.99470 1.21824 0.96399 0.99268 0.98474 1.21534 0.94926 0.99653 0.84321 0.90998 0.91022 0.90210 0.85192 0.85140 0.89063 0.91526 0.90691 0.90558 0.89578 0.92354 0.87740 0.89199 0.89806 0.89609 0.89829 0.89491 0.91167 0.88951 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.92 37.16 0.37 -0.62 16 2 C -0.64 -4.48 6.90 37.16 0.26 -4.23 16 3 S 2.61 30.17 5.45 -107.50 -0.59 29.59 16 4 O -0.95 -14.04 16.59 -57.54 -0.95 -14.99 16 5 O -0.95 -13.91 16.59 -57.54 -0.95 -14.86 16 6 N -1.00 -11.86 3.22 -113.52 -0.37 -12.22 16 7 C 0.12 1.41 6.43 -3.71 -0.02 1.38 16 8 C -0.11 -1.73 4.68 -26.61 -0.12 -1.86 16 9 C -0.10 -1.70 1.76 -91.73 -0.16 -1.87 16 10 C 0.46 11.00 6.82 -10.99 -0.07 10.93 16 11 O -0.58 -16.08 15.74 5.54 0.09 -15.99 16 12 N -0.42 -10.36 2.91 -107.73 -0.31 -10.68 16 13 C -0.31 -8.55 8.75 -14.93 -0.13 -8.68 16 14 H 0.09 2.72 7.48 -52.49 -0.39 2.32 16 15 C 0.04 1.09 4.60 -17.47 -0.08 1.01 16 16 N -0.87 -22.35 10.85 55.50 0.60 -21.74 16 17 Si 0.92 20.60 29.57 -169.99 -5.03 15.57 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 C 0.13 2.76 2.71 -67.93 -0.18 2.57 16 22 C -0.14 -2.72 8.50 -26.73 -0.23 -2.95 16 23 C -0.23 -3.80 8.65 -26.73 -0.23 -4.03 16 24 C -0.12 -1.96 5.23 -26.61 -0.14 -2.10 16 25 C 0.12 1.46 6.43 -3.71 -0.02 1.43 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.09 1.01 6.86 -51.93 -0.36 0.65 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.35 6.13 -51.93 -0.32 1.03 16 36 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 37 H 0.11 2.20 6.57 -51.93 -0.34 1.86 16 38 H 0.09 1.94 7.78 -51.93 -0.40 1.54 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 42 H 0.09 1.46 5.65 -51.93 -0.29 1.16 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.09 1.06 6.86 -51.93 -0.36 0.70 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -34.30 364.89 -9.87 -44.18 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.08 Total: 4.66 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.78 Total: -9.00 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.08 Total: -44.64 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -1.82 Total: -45.84 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 16 Polarization: 30.17 SS G_CDS: -0.59 Total: 29.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.30 -9.87 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.770 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds