Wall clock time and date at job start Tue Mar 31 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.46680 * 2 1 4 4 C 1.34806 * 117.00059 * 180.02562 * 3 2 1 5 5 O 1.21560 * 119.99575 * 359.97438 * 4 3 2 6 6 C 1.46994 * 120.00448 * 180.02562 * 4 3 2 7 7 C 1.37974 * 120.62231 * 359.97438 * 6 4 3 8 8 N 1.33983 * 122.28527 * 180.02562 * 7 6 4 9 9 C 1.46495 * 118.53110 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47252 * 265.02268 * 9 8 7 11 11 C 1.50704 * 109.47078 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00233 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99890 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00062 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99995 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47349 * 90.00146 * 15 13 11 17 17 H 1.48503 * 109.47060 * 209.99714 * 15 13 11 18 18 H 1.48501 * 109.46958 * 329.99711 * 15 13 11 19 19 C 1.37557 * 122.93307 * 359.97438 * 8 7 6 20 20 N 1.32774 * 120.36324 * 180.02562 * 19 8 7 21 21 C 1.31607 * 121.75969 * 179.97438 * 20 19 8 22 22 C 1.50701 * 119.18547 * 179.97438 * 21 20 19 23 23 C 1.38634 * 121.62857 * 359.70113 * 21 20 19 24 24 C 1.38297 * 119.30404 * 0.57439 * 23 21 20 25 25 C 1.39666 * 117.97317 * 359.46576 * 24 23 21 26 26 C 1.47263 * 120.62902 * 180.02562 * 6 4 3 27 27 O 1.21845 * 121.45680 * 359.96291 * 26 6 4 28 28 H 1.08992 * 109.47318 * 299.99998 * 1 2 3 29 29 H 1.09000 * 109.46865 * 60.00033 * 1 2 3 30 30 H 1.08998 * 109.46834 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47318 * 240.00002 * 2 1 3 32 32 H 1.08999 * 109.47280 * 119.99627 * 2 1 3 33 33 H 1.07997 * 118.85671 * 0.03088 * 7 6 4 34 34 H 1.09004 * 109.47566 * 25.02426 * 9 8 7 35 35 H 1.09000 * 109.47056 * 145.02546 * 9 8 7 36 36 H 1.09000 * 109.47216 * 300.00087 * 10 9 8 37 37 H 1.08995 * 109.47723 * 60.00235 * 10 9 8 38 38 H 0.96997 * 120.00053 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.46496 * 90.00291 * 22 21 20 40 40 H 1.09000 * 109.46897 * 209.99812 * 22 21 20 41 41 H 1.08996 * 109.46969 * 330.00109 * 22 21 20 42 42 H 1.08001 * 120.34507 * 180.31881 * 23 21 20 43 43 H 1.08002 * 121.01723 * 179.74462 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3504 1.5458 -0.0005 5 8 4.0909 0.5817 -0.0005 6 6 3.9122 2.9041 0.0000 7 6 3.0836 4.0074 0.0005 8 7 3.5596 5.2598 0.0005 9 6 2.6051 6.3711 0.0005 10 6 2.3677 6.8395 -1.4365 11 6 1.3862 7.9831 -1.4364 12 1 0.9727 8.3398 -0.5047 13 6 1.0160 8.5740 -2.6259 14 7 0.1591 9.5717 -2.6259 15 14 1.7317 7.9575 -4.2375 16 1 0.8633 6.8854 -4.7868 17 1 1.8062 9.0795 -5.2074 18 1 3.0944 7.4175 -3.9995 19 6 4.9045 5.5487 0.0005 20 7 5.3200 6.8098 0.0010 21 6 6.5996 7.1175 0.0015 22 6 7.0065 8.5685 0.0015 23 6 7.5825 6.1398 0.0077 24 6 7.2119 4.8074 0.0014 25 6 5.8479 4.5068 0.0005 26 6 5.3699 3.1131 -0.0011 27 8 6.1468 2.1744 -0.0019 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0143 3.8561 0.0010 34 1 1.6619 6.0400 0.4352 35 1 3.0071 7.1954 0.5896 36 1 3.3108 7.1706 -1.8712 37 1 1.9656 6.0153 -2.0257 38 1 -0.1010 9.9876 -3.4627 39 1 7.1042 8.9184 1.0292 40 1 7.9617 8.6780 -0.5119 41 1 6.2479 9.1585 -0.5127 42 1 8.6266 6.4158 0.0132 43 1 7.9545 4.0232 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069896770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:33 Heat of formation + Delta-G solvation = -71.041910 kcal Electronic energy + Delta-G solvation = -28003.842742 eV Core-core repulsion = 24014.357268 eV Total energy + Delta-G solvation = -3989.485474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54632 -40.06069 -38.57919 -38.19306 -36.17165 -34.00897 -32.95265 -32.68354 -31.94349 -31.49903 -29.84843 -28.24238 -25.52998 -25.07034 -23.98900 -22.87370 -22.13840 -21.40243 -20.77876 -19.05216 -18.37580 -17.70172 -16.91452 -16.55626 -16.46582 -15.93229 -15.66320 -15.40869 -14.99961 -14.56954 -14.39867 -14.21817 -13.75548 -13.69129 -13.66381 -13.49006 -13.12917 -12.88667 -12.85413 -12.69706 -12.60020 -12.22548 -12.19674 -11.92524 -11.63958 -11.57053 -11.22348 -10.49103 -10.48522 -10.43473 -10.27368 -10.08603 -10.01067 -9.87432 -9.51111 -9.31594 -9.23817 -8.72795 -7.92689 -6.23528 -4.24686 0.45990 0.59557 1.57068 2.33773 2.47782 2.70186 3.17986 3.22847 3.26942 3.30045 3.89208 3.93325 4.25974 4.28434 4.38454 4.52191 4.67402 4.85550 4.86049 4.91696 5.10121 5.12400 5.17410 5.19622 5.23881 5.38878 5.44559 5.49624 5.56109 5.68251 5.69522 5.78847 5.82233 5.88424 5.91971 6.11164 6.13865 6.28125 6.53182 6.58359 6.72095 6.93171 7.07896 7.51174 7.76819 7.88144 8.04756 8.26589 8.77378 9.36995 10.88910 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.007996 B = 0.004988 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.790056 B = 5612.368430 C = 8391.386136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.366 6.366 4 C 0.531 3.469 5 O -0.498 6.498 6 C -0.348 4.348 7 C 0.268 3.732 8 N -0.463 5.463 9 C 0.100 3.900 10 C -0.022 4.022 11 C -0.523 4.523 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.895 5.895 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.385 3.615 20 N -0.499 5.499 21 C 0.196 3.804 22 C -0.111 4.111 23 C -0.210 4.210 24 C 0.010 3.990 25 C -0.237 4.237 26 C 0.445 3.555 27 O -0.465 6.465 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.185 0.815 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.029 0.971 37 H 0.015 0.985 38 H 0.266 0.734 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.144 0.856 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -9.138 6.806 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 O -0.284 6.284 4 C 0.376 3.624 5 O -0.386 6.386 6 C -0.359 4.359 7 C 0.130 3.870 8 N -0.149 5.149 9 C -0.019 4.019 10 C -0.060 4.060 11 C -0.562 4.562 12 H 0.095 0.905 13 C -0.127 4.127 14 N -0.532 5.532 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.192 1.192 19 C 0.154 3.846 20 N -0.212 5.212 21 C 0.054 3.946 22 C -0.168 4.168 23 C -0.230 4.230 24 C -0.015 4.015 25 C -0.243 4.243 26 C 0.327 3.673 27 O -0.343 6.343 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.202 0.798 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.048 0.952 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.162 0.838 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.980 -8.978 6.694 13.751 hybrid contribution 0.698 -0.921 -1.042 1.556 sum 8.679 -9.899 5.652 14.327 Atomic orbital electron populations 1.21814 0.92691 1.02802 1.03695 1.22942 0.95084 0.80243 1.02478 1.86518 1.24285 1.32274 1.85334 1.20043 0.80098 0.88828 0.73427 1.90878 1.59960 1.41683 1.46056 1.20861 0.94925 0.89811 1.30254 1.22445 1.00521 0.82032 0.81986 1.43605 1.05099 1.07729 1.58428 1.22614 0.89737 0.86603 1.02958 1.19911 0.98409 0.97339 0.90337 1.20769 1.24870 1.15205 0.95323 0.90479 1.24904 0.94371 0.94434 0.98944 1.69879 1.32637 1.23324 1.27393 0.86859 0.80294 0.78800 0.83845 1.20086 1.21047 1.19210 1.18234 0.84001 0.89478 0.92843 1.67125 1.18595 1.17870 1.17636 1.21354 0.86831 0.97340 0.89124 1.20869 1.02576 0.89692 1.03671 1.21934 1.01154 0.92706 1.07245 1.21498 0.94044 0.97036 0.88960 1.20892 0.94654 0.95148 1.13612 1.19067 0.86958 0.86990 0.74262 1.90713 1.58299 1.44085 1.41220 0.91430 0.91314 0.90428 0.91378 0.91407 0.79822 0.88866 0.87781 0.95238 0.96659 0.92398 0.89673 0.90167 0.89368 0.83783 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.07 0.74 6.20 37.16 0.23 0.97 16 3 O -0.37 -5.03 9.43 -40.78 -0.38 -5.41 16 4 C 0.53 8.85 7.89 34.28 0.27 9.12 16 5 O -0.50 -9.84 15.36 -26.11 -0.40 -10.24 16 6 C -0.35 -5.63 6.04 -102.78 -0.62 -6.25 16 7 C 0.27 3.76 9.78 -16.71 -0.16 3.59 16 8 N -0.46 -7.17 2.62 -116.02 -0.30 -7.47 16 9 C 0.10 1.65 5.13 -4.05 -0.02 1.63 16 10 C -0.02 -0.47 4.33 -27.88 -0.12 -0.59 16 11 C -0.52 -13.39 9.66 -34.44 -0.33 -13.73 16 12 H 0.08 2.09 7.99 -52.49 -0.42 1.67 16 13 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 15 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 19 C 0.39 6.21 7.32 -155.55 -1.14 5.07 16 20 N -0.50 -7.90 8.97 -8.51 -0.08 -7.98 16 21 C 0.20 2.49 6.78 -82.54 -0.56 1.93 16 22 C -0.11 -1.05 10.14 36.01 0.37 -0.69 16 23 C -0.21 -2.30 9.72 -39.41 -0.38 -2.68 16 24 C 0.01 0.13 9.77 -39.03 -0.38 -0.25 16 25 C -0.24 -3.73 5.89 -104.79 -0.62 -4.35 16 26 C 0.44 7.86 7.15 -32.21 -0.23 7.63 16 27 O -0.46 -9.42 15.91 -14.99 -0.24 -9.66 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.18 2.04 7.33 -52.49 -0.38 1.65 16 34 H 0.09 1.34 7.83 -51.93 -0.41 0.93 16 35 H 0.10 1.78 7.43 -51.93 -0.39 1.39 16 36 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 37 H 0.02 0.32 7.57 -51.93 -0.39 -0.07 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.15 1.72 7.85 -52.49 -0.41 1.31 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -34.36 370.64 -8.87 -43.24 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.74 Total: -1.55 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.42 Total: 2.53 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.39 Total: -40.50 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.02 Total: -25.31 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.36 -8.87 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069896770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.803 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds