Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39603 * 120.10763 * 338.06622 * 3 2 1 5 5 C 1.38009 * 120.01013 * 179.97438 * 4 3 2 6 6 C 1.38225 * 120.22188 * 359.97438 * 5 4 3 7 7 C 1.39004 * 120.21167 * 0.04244 * 6 5 4 8 8 N 1.39745 * 120.00712 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00292 * 215.29854 * 8 7 6 10 10 O 1.21376 * 120.00136 * 4.98448 * 9 8 7 11 11 C 1.49350 * 120.00387 * 184.98297 * 9 8 7 12 12 O 1.21366 * 119.99896 * 354.41846 * 11 9 8 13 13 N 1.34777 * 120.00581 * 174.41490 * 11 9 8 14 14 C 1.46499 * 119.99770 * 354.62469 * 13 11 9 15 15 C 1.50702 * 109.47229 * 84.97251 * 14 13 11 16 16 H 1.08004 * 119.99766 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00384 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99600 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00423 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47286 * 59.99244 * 19 17 15 21 21 H 1.48492 * 109.47399 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46758 * 299.99582 * 19 17 15 23 23 C 1.46494 * 120.00235 * 174.62049 * 13 11 9 24 24 C 1.53004 * 109.47268 * 92.18739 * 23 13 11 25 25 O 1.42905 * 109.47036 * 64.99774 * 24 23 13 26 26 C 1.42900 * 113.99983 * 180.02562 * 25 24 23 27 27 C 1.38700 * 119.98777 * 359.96098 * 7 6 5 28 28 H 4.52055 * 14.03290 * 0.02562 * 4 2 1 29 29 H 1.07997 * 119.99111 * 359.95292 * 4 3 2 30 30 H 1.07996 * 119.89136 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.89507 * 180.02562 * 6 5 4 32 32 H 0.97006 * 120.00101 * 35.29950 * 8 7 6 33 33 H 1.08999 * 109.47446 * 204.96982 * 14 13 11 34 34 H 1.09001 * 109.47114 * 324.97466 * 14 13 11 35 35 H 0.96997 * 120.00053 * 180.02562 * 18 17 15 36 36 H 1.09002 * 109.47342 * 212.18344 * 23 13 11 37 37 H 1.08999 * 109.47720 * 332.18604 * 23 13 11 38 38 H 1.09001 * 109.47390 * 184.99787 * 24 23 13 39 39 H 1.09001 * 109.46858 * 305.00343 * 24 23 13 40 40 H 1.08995 * 109.46961 * 59.99601 * 26 25 24 41 41 H 1.08999 * 109.47118 * 179.97438 * 26 25 24 42 42 H 1.09003 * 109.46488 * 300.00268 * 26 25 24 43 43 H 1.08006 * 120.11063 * 180.29876 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3068 -1.1193 0.4511 5 6 4.6869 -1.1167 0.4497 6 6 5.3801 -0.0078 0.0022 7 6 4.6917 1.1125 -0.4487 8 7 5.3968 2.2311 -0.9008 9 6 4.9153 3.4689 -0.6721 10 8 3.9180 3.6169 0.0036 11 6 5.6089 4.6586 -1.2502 12 8 6.6607 4.5207 -1.8398 13 7 5.0669 5.8854 -1.1172 14 6 3.7424 6.0390 -0.5103 15 6 3.8803 6.0948 0.9893 16 1 4.8569 6.0226 1.4448 17 6 2.7597 6.2370 1.7800 18 7 1.5704 6.3245 1.2253 19 14 2.9307 6.3069 3.6388 20 1 3.7838 7.4629 4.0143 21 1 1.5882 6.4626 4.2539 22 1 3.5563 5.0512 4.1258 23 6 5.8022 7.0651 -1.5793 24 6 5.4064 7.3794 -3.0235 25 8 4.0274 7.7515 -3.0692 26 6 3.5536 8.0665 -4.3801 27 6 3.3047 1.1193 -0.4511 28 1 -1.0500 -0.0011 -0.0001 29 1 2.7688 -1.9877 0.8015 30 1 5.2271 -1.9840 0.7995 31 1 6.4601 -0.0116 0.0030 32 1 6.2329 2.1166 -1.3792 33 1 3.2838 6.9611 -0.8675 34 1 3.1157 5.1909 -0.7862 35 1 0.7821 6.4249 1.7814 36 1 5.5603 7.9164 -0.9429 37 1 6.8731 6.8680 -1.5308 38 1 6.0171 8.2014 -3.3969 39 1 5.5655 6.4974 -3.6439 40 1 3.6743 7.1986 -5.0283 41 1 2.4992 8.3381 -4.3298 42 1 4.1259 8.9026 -4.7820 43 1 2.7677 1.9869 -0.8055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132931876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -9.357776 kcal Electronic energy + Delta-G solvation = -28187.040524 eV Core-core repulsion = 24200.229874 eV Total energy + Delta-G solvation = -3986.810650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57349 -39.21932 -37.89577 -37.26511 -35.53729 -34.41850 -33.20627 -32.47005 -30.27527 -29.96138 -29.44195 -27.03891 -26.14875 -24.69473 -23.43709 -22.82384 -22.71342 -21.16092 -19.31394 -18.88570 -17.16083 -16.69565 -16.58594 -16.38366 -16.05554 -15.78359 -15.43360 -15.27031 -14.80461 -14.67431 -14.39708 -14.29448 -14.02275 -13.60014 -13.28539 -13.24141 -12.83127 -12.27578 -12.05466 -11.88531 -11.79333 -11.59565 -11.56570 -11.49551 -11.12593 -10.94274 -10.85807 -10.74336 -10.43641 -10.37893 -9.99117 -9.91071 -9.63075 -9.42863 -8.73890 -8.48025 -8.23607 -7.98859 -7.82336 -5.93572 -3.94607 1.00179 1.39469 2.15182 2.79559 2.94839 3.12907 3.37837 3.41725 3.45272 3.82696 4.04474 4.12034 4.16284 4.38523 4.53494 4.96024 5.01906 5.16078 5.23729 5.32572 5.42832 5.44017 5.56513 5.56834 5.59166 5.60187 5.60853 5.79825 5.83071 5.91906 6.16776 6.24032 6.34334 6.40822 6.55243 6.63497 6.71498 7.07942 7.35923 7.43520 7.52474 7.60797 7.66757 7.95391 8.13637 8.27565 8.35612 8.66343 9.03610 9.66620 11.15382 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.008799 B = 0.004556 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.412530 B = 6143.995527 C = 7476.023091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 C 0.028 3.972 4 C -0.118 4.118 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.162 3.838 8 N -0.665 5.665 9 C 0.484 3.516 10 O -0.421 6.421 11 C 0.506 3.494 12 O -0.565 6.565 13 N -0.550 5.550 14 C 0.235 3.765 15 C -0.512 4.512 16 H 0.051 0.949 17 C 0.070 3.930 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.118 3.882 24 C 0.048 3.952 25 O -0.374 6.374 26 C 0.033 3.967 27 C -0.094 4.094 28 H 0.224 0.776 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.416 0.584 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -8.859 -7.877 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.027 3.973 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.160 4.160 7 C 0.068 3.932 8 N -0.315 5.315 9 C 0.265 3.735 10 O -0.287 6.287 11 C 0.289 3.711 12 O -0.448 6.448 13 N -0.279 5.279 14 C 0.117 3.883 15 C -0.551 4.551 16 H 0.069 0.931 17 C -0.132 4.132 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.005 4.005 24 C -0.030 4.030 25 O -0.293 6.293 26 C -0.064 4.064 27 C -0.114 4.114 28 H 0.240 0.760 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.253 0.747 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.470 -8.624 -7.471 12.254 hybrid contribution 0.359 0.065 0.672 0.765 sum 4.829 -8.558 -6.799 11.950 Atomic orbital electron populations 1.24832 0.95728 0.99478 0.99384 1.19975 0.92001 1.01127 1.01289 1.15752 0.86675 0.94236 1.00600 1.21098 0.94128 0.97474 1.01024 1.20781 0.93639 0.97932 0.99633 1.21018 1.00081 0.93678 1.01207 1.17541 0.90956 0.87239 0.97511 1.43276 1.26701 1.03713 1.57801 1.20450 0.86354 0.83964 0.82704 1.91066 1.22040 1.84182 1.31429 1.19777 0.85229 0.84941 0.81202 1.90642 1.23904 1.86051 1.44172 1.48235 1.21037 1.03536 1.55109 1.19912 0.76035 0.99645 0.92722 1.21155 0.93029 1.50085 0.90805 0.93055 1.24758 0.95080 0.95143 0.98197 1.69910 0.97784 1.49895 1.35266 0.86687 0.77047 0.78399 0.86002 1.20445 1.21301 1.20396 1.21536 0.96733 0.88954 0.93317 1.22982 0.83182 0.98559 0.98273 1.88079 1.25381 1.88316 1.27507 1.22690 1.00137 0.98451 0.85106 1.21262 0.92563 0.98103 0.99515 0.75964 0.85770 0.85301 0.85361 0.74657 0.93391 0.92666 0.92941 0.88779 0.89028 0.92828 0.93225 0.94624 0.89747 0.94645 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 19.25 29.55 0.57 -1.85 16 2 C -0.14 -2.30 13.24 -38.84 -0.51 -2.82 16 3 C 0.03 0.45 5.72 -107.03 -0.61 -0.16 16 4 C -0.12 -1.54 9.75 -39.16 -0.38 -1.92 16 5 C -0.10 -1.16 10.02 -39.67 -0.40 -1.56 16 6 C -0.14 -1.77 9.96 -39.30 -0.39 -2.16 16 7 C 0.16 2.59 6.23 -83.80 -0.52 2.07 16 8 N -0.67 -10.95 5.32 -10.33 -0.05 -11.00 16 9 C 0.48 9.95 7.42 -11.63 -0.09 9.86 16 10 O -0.42 -10.23 9.97 5.47 0.05 -10.17 16 11 C 0.51 10.48 7.68 -11.63 -0.09 10.39 16 12 O -0.57 -11.35 16.09 5.48 0.09 -11.26 16 13 N -0.55 -11.77 2.44 -175.61 -0.43 -12.19 16 14 C 0.24 5.98 4.52 -5.19 -0.02 5.96 16 15 C -0.51 -14.22 7.74 -34.44 -0.27 -14.49 16 16 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 17 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 18 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 19 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.12 2.08 5.79 -4.04 -0.02 2.06 16 24 C 0.05 0.74 6.28 37.16 0.23 0.98 16 25 O -0.37 -6.59 9.41 -35.23 -0.33 -6.92 16 26 C 0.03 0.43 11.01 101.05 1.11 1.55 16 27 C -0.09 -1.67 8.34 -38.98 -0.33 -1.99 16 28 H 0.22 2.08 7.80 -54.09 -0.42 1.66 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.42 5.76 8.30 -40.82 -0.34 5.42 16 33 H 0.05 1.30 7.02 -51.93 -0.36 0.93 16 34 H 0.06 1.54 5.92 -51.93 -0.31 1.23 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 37 H 0.09 1.48 7.44 -51.93 -0.39 1.09 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.14 2.83 6.56 -52.48 -0.34 2.49 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -33.75 377.93 -6.59 -40.34 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.51 Total: 6.05 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -1.82 Total: 7.82 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.25 Total: -48.85 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.19 Total: -28.35 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.75 -6.59 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132931876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.983 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds