Wall clock time and date at job start Tue Mar 31 2020 05:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00266 * 2 1 4 4 N 1.34777 * 119.99997 * 179.97438 * 2 1 3 5 5 C 1.47582 * 134.49474 * 179.97438 * 4 2 1 6 6 C 1.53952 * 86.11714 * 155.36434 * 5 4 2 7 7 N 1.46491 * 113.74147 * 137.95462 * 6 5 4 8 8 C 1.34783 * 120.00149 * 156.92558 * 7 6 5 9 9 O 1.21720 * 119.99754 * 359.97438 * 8 7 6 10 10 C 1.46254 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.35024 * 119.99741 * 186.98126 * 10 8 7 12 12 C 1.46955 * 120.00243 * 10.95710 * 11 10 8 13 13 C 1.40017 * 120.10355 * 226.00587 * 12 11 10 14 14 C 1.37602 * 119.89826 * 179.79356 * 13 12 11 15 15 C 1.39177 * 120.10029 * 0.48531 * 14 13 12 16 16 O 1.35574 * 119.89819 * 179.77071 * 15 14 13 17 17 C 1.34779 * 116.99846 * 174.20145 * 16 15 14 18 18 H 1.07997 * 120.00295 * 5.06535 * 17 16 15 19 19 C 1.38715 * 119.99787 * 185.06328 * 17 16 15 20 20 N 1.31509 * 120.00179 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00016 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47079 * 60.00358 * 21 19 17 23 23 H 1.48503 * 109.47355 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47419 * 300.00234 * 21 19 17 25 25 C 1.39170 * 120.20246 * 359.74075 * 15 14 13 26 26 C 1.37600 * 120.10304 * 0.02840 * 25 15 14 27 27 C 1.47810 * 134.45559 * 359.87259 * 4 2 1 28 28 H 1.08998 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46750 * 300.00341 * 1 2 3 30 30 H 1.09001 * 109.47181 * 60.00075 * 1 2 3 31 31 H 1.08998 * 113.76489 * 41.06405 * 5 4 2 32 32 H 1.09000 * 113.87467 * 269.67960 * 5 4 2 33 33 H 1.09002 * 113.73888 * 269.15985 * 6 5 4 34 34 H 0.96999 * 120.00504 * 336.92530 * 7 6 5 35 35 H 1.07997 * 120.00125 * 7.24622 * 10 8 7 36 36 H 1.07999 * 119.99294 * 190.96368 * 11 10 8 37 37 H 1.07999 * 120.04955 * 359.97438 * 13 12 11 38 38 H 1.08001 * 119.94899 * 180.23233 * 14 13 12 39 39 H 0.97004 * 120.00039 * 180.02562 * 20 19 17 40 40 H 1.08007 * 119.95108 * 180.02562 * 25 15 14 41 41 H 1.08004 * 120.04926 * 180.02562 * 26 25 15 42 42 H 1.09002 * 113.77702 * 90.37225 * 27 4 2 43 43 H 1.09009 * 113.83585 * 318.91266 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6097 -1.5366 0.0002 6 6 3.1595 -2.8618 0.6416 7 7 3.8396 -4.0405 0.0992 8 6 3.9170 -5.1700 0.8305 9 8 3.4222 -5.2105 1.9419 10 6 4.5965 -6.3466 0.2892 11 6 4.5532 -7.5185 0.9584 12 6 3.6351 -7.6828 2.0941 13 6 4.0880 -8.2637 3.2848 14 6 3.2259 -8.4116 4.3471 15 6 1.9029 -7.9940 4.2357 16 8 1.0558 -8.1459 5.2832 17 6 -0.1761 -7.6141 5.1560 18 1 -0.4775 -7.1676 4.2200 19 6 -1.0569 -7.6405 6.2273 20 7 -0.6897 -8.1838 7.3672 21 14 -2.7641 -6.9029 6.0513 22 1 -3.4971 -7.6045 4.9670 23 1 -3.5041 -7.0567 7.3296 24 1 -2.6482 -5.4605 5.7175 25 6 1.4471 -7.4204 3.0524 26 6 2.3033 -7.2641 1.9866 27 6 1.7847 -2.5912 0.0035 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.2235 -0.9179 0.6549 32 1 4.0350 -1.6531 -0.9966 33 1 3.1496 -2.8408 1.7313 34 1 4.2343 -4.0081 -0.7863 35 1 5.1365 -6.2769 -0.6435 36 1 5.1934 -8.3352 0.6589 37 1 5.1131 -8.5925 3.3705 38 1 3.5753 -8.8561 5.2672 39 1 -1.3058 -8.2026 8.1163 40 1 0.4197 -7.0973 2.9705 41 1 1.9487 -6.8185 1.0689 42 1 1.6713 -3.0179 -0.9931 43 1 0.9439 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255088674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:42 Heat of formation + Delta-G solvation = -3.576075 kcal Electronic energy + Delta-G solvation = -27108.090655 eV Core-core repulsion = 23121.530718 eV Total energy + Delta-G solvation = -3986.559936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.80381 -39.57582 -38.75681 -37.88530 -36.44651 -33.85053 -33.10797 -32.14753 -30.97096 -30.12274 -28.60453 -27.68156 -26.51340 -25.38111 -23.80895 -21.96209 -21.60179 -20.94304 -19.59586 -19.01209 -18.00854 -17.44720 -17.31582 -16.92460 -16.49023 -16.05046 -15.22888 -14.84238 -14.59047 -14.47860 -14.41760 -14.00727 -13.68433 -13.46318 -13.38818 -13.29773 -13.05248 -12.90754 -12.70048 -12.69052 -12.58505 -12.28580 -12.13015 -11.70921 -11.57507 -11.35523 -10.99159 -10.82430 -10.63137 -10.46100 -10.18975 -9.58904 -9.43744 -9.22725 -9.19554 -9.05496 -8.72505 -7.98654 -6.92328 -6.47710 -4.03480 1.19327 2.32381 2.35781 2.39405 2.63000 3.11373 3.13814 3.15699 3.26645 3.46635 3.95149 4.02199 4.25627 4.54498 4.65299 4.75916 4.87891 4.99387 5.00833 5.08677 5.13482 5.14912 5.17222 5.28591 5.30877 5.37009 5.52988 5.59919 5.69926 5.73619 5.81985 6.20265 6.25666 6.32715 6.40804 6.55924 6.74157 6.99777 7.09110 7.29296 7.31153 7.41929 7.47508 7.53035 7.83753 7.88445 7.98625 8.41287 8.97855 9.69098 10.70033 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.003428 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.304816 B = 8165.803429 C =10946.130720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.538 3.462 3 O -0.550 6.550 4 N -0.644 5.644 5 C 0.097 3.903 6 C 0.119 3.881 7 N -0.728 5.728 8 C 0.542 3.458 9 O -0.505 6.505 10 C -0.267 4.267 11 C 0.030 3.970 12 C -0.188 4.188 13 C -0.046 4.046 14 C -0.207 4.207 15 C 0.170 3.830 16 O -0.172 6.172 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.241 4.241 26 C 0.009 3.991 27 C 0.085 3.915 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.399 0.601 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.271 0.729 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.683 7.579 -18.387 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.329 3.671 3 O -0.427 6.427 4 N -0.381 5.381 5 C -0.026 4.026 6 C 0.012 3.988 7 N -0.381 5.381 8 C 0.332 3.668 9 O -0.380 6.380 10 C -0.288 4.288 11 C 0.011 3.989 12 C -0.189 4.189 13 C -0.064 4.064 14 C -0.226 4.226 15 C 0.115 3.885 16 O -0.075 6.075 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.260 4.260 26 C -0.009 4.009 27 C -0.039 4.039 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.233 0.767 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.417 8.157 -17.070 19.977 hybrid contribution -0.670 0.494 -0.744 1.117 sum 5.746 8.651 -17.814 20.620 Atomic orbital electron populations 1.21819 0.90983 1.04548 1.05324 1.20520 0.90299 0.81454 0.74847 1.90729 1.70808 1.30477 1.50702 1.49880 1.08748 1.05753 1.73743 1.23497 0.84311 0.93599 1.01180 1.22894 0.91100 0.83826 1.00931 1.45880 1.59626 1.12323 1.20278 1.18571 0.79469 0.83283 0.85486 1.91025 1.45168 1.82737 1.19087 1.22580 1.09429 0.93482 1.03302 1.22362 0.90939 0.94833 0.90784 1.18285 0.94164 1.11277 0.95217 1.20615 0.97610 0.96112 0.92079 1.20010 0.91691 1.10816 1.00125 1.19530 0.89973 0.91426 0.87596 1.83904 1.22844 1.65792 1.34915 1.21332 0.87173 1.38085 1.00013 0.88982 1.25312 0.99913 0.96967 0.94294 1.70009 1.36404 1.40814 1.02195 0.85783 0.80150 0.79427 0.78098 1.19443 1.20221 1.19460 1.20945 1.00978 1.09908 0.94190 1.20527 0.91950 0.91883 0.96582 1.23896 0.99805 0.78492 1.01686 0.90408 0.88481 0.88647 0.89274 0.89448 0.85352 0.76701 0.86035 0.85984 0.87172 0.86641 0.91877 0.85847 0.88530 0.89155 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.34 36.00 0.37 -0.91 16 2 C 0.54 6.16 8.17 -10.99 -0.09 6.07 16 3 O -0.55 -8.58 17.83 5.56 0.10 -8.48 16 4 N -0.64 -6.26 3.61 -178.29 -0.64 -6.91 16 5 C 0.10 0.80 8.59 -2.96 -0.03 0.78 16 6 C 0.12 1.09 4.40 -70.13 -0.31 0.79 16 7 N -0.73 -6.31 5.37 -56.77 -0.30 -6.62 16 8 C 0.54 6.91 6.86 -13.04 -0.09 6.82 16 9 O -0.51 -8.97 11.97 5.17 0.06 -8.91 16 10 C -0.27 -2.91 9.92 -37.50 -0.37 -3.28 16 11 C 0.03 0.38 9.79 -37.20 -0.36 0.02 16 12 C -0.19 -3.25 4.43 -105.03 -0.46 -3.72 16 13 C -0.05 -0.83 9.78 -39.15 -0.38 -1.21 16 14 C -0.21 -4.48 9.97 -39.46 -0.39 -4.88 16 15 C 0.17 4.19 6.66 -38.89 -0.26 3.93 16 16 O -0.17 -4.96 9.74 0.73 0.01 -4.95 16 17 C -0.39 -10.94 9.48 30.91 0.29 -10.65 16 18 H 0.09 2.39 5.18 -52.49 -0.27 2.12 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 21 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.24 -5.38 9.14 -39.47 -0.36 -5.74 16 26 C 0.01 0.17 6.69 -39.14 -0.26 -0.09 16 27 C 0.09 0.69 7.96 -2.83 -0.02 0.67 16 28 H 0.08 0.49 7.22 -51.93 -0.37 0.11 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.13 1.53 7.50 -51.93 -0.39 1.14 16 34 H 0.40 2.16 8.69 -40.82 -0.35 1.80 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.12 2.76 5.62 -52.48 -0.29 2.47 16 41 H 0.10 1.64 7.27 -52.48 -0.38 1.26 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.78 7.97 -51.92 -0.41 0.36 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -36.27 371.39 -7.69 -43.97 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.42 Total: 5.74 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.83 Total: -10.40 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.19 Total: -37.95 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.27 -7.69 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255088674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.392 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds