Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45650 * 117.70834 * 2 1 4 4 C 1.52989 * 110.77772 * 158.09724 * 3 2 1 5 5 N 1.47267 * 108.18313 * 46.72619 * 4 3 2 6 6 C 1.34772 * 121.35077 * 118.47857 * 5 4 3 7 7 O 1.21724 * 120.00241 * 359.97438 * 6 5 4 8 8 C 1.46255 * 119.99865 * 179.97438 * 6 5 4 9 9 C 1.35030 * 120.00043 * 173.02157 * 8 6 5 10 10 C 1.46961 * 119.99770 * 346.79267 * 9 8 6 11 11 C 1.40030 * 120.09547 * 135.37090 * 10 9 8 12 12 C 1.37594 * 119.89080 * 179.97438 * 11 10 9 13 13 C 1.39177 * 120.10864 * 0.25290 * 12 11 10 14 14 O 1.35570 * 119.90120 * 179.74614 * 13 12 11 15 15 C 1.34776 * 117.00134 * 7.20618 * 14 13 12 16 16 H 1.08009 * 119.99915 * 6.21213 * 15 14 13 17 17 C 1.38718 * 120.00281 * 186.20751 * 15 14 13 18 18 N 1.31508 * 119.99821 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00228 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46711 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47116 * 120.00256 * 19 17 15 22 22 H 1.48496 * 109.46910 * 240.00154 * 19 17 15 23 23 C 1.39176 * 120.19730 * 359.49292 * 13 12 11 24 24 C 1.37594 * 120.10150 * 0.51045 * 23 13 12 25 25 C 1.47050 * 117.29526 * 298.74204 * 5 4 3 26 26 C 1.33380 * 117.70652 * 180.02562 * 2 1 3 27 27 O 1.21284 * 118.48997 * 4.32494 * 26 2 1 28 28 H 1.09003 * 109.47014 * 90.00206 * 1 2 3 29 29 H 1.08998 * 109.46911 * 209.99855 * 1 2 3 30 30 H 1.08999 * 109.47165 * 330.00481 * 1 2 3 31 31 H 1.09000 * 109.21157 * 37.76322 * 3 2 1 32 32 H 1.09000 * 109.21329 * 278.43294 * 3 2 1 33 33 H 1.08998 * 109.71787 * 287.05161 * 4 3 2 34 34 H 1.08994 * 109.71550 * 166.39932 * 4 3 2 35 35 H 1.07996 * 120.00126 * 353.02724 * 8 6 5 36 36 H 1.07993 * 119.99925 * 166.79115 * 9 8 6 37 37 H 1.07999 * 120.05036 * 359.95390 * 11 10 9 38 38 H 1.08008 * 119.94594 * 179.97438 * 12 11 10 39 39 H 0.96998 * 119.99774 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.95109 * 180.25419 * 23 13 12 41 41 H 1.08004 * 120.05148 * 179.76991 * 24 23 13 42 42 H 1.08997 * 109.56680 * 162.31413 * 25 5 4 43 43 H 1.08997 * 109.56721 * 282.67189 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1422 1.2895 0.0000 4 6 3.5695 1.1529 0.5336 5 7 4.1972 -0.0055 -0.1244 6 6 5.2928 0.1353 -0.8966 7 8 5.7832 1.2370 -1.0621 8 6 5.8924 -1.0356 -1.5356 9 6 6.9013 -0.8799 -2.4195 10 6 7.2052 0.4524 -2.9604 11 6 8.5327 0.8897 -3.0451 12 6 8.8125 2.1376 -3.5527 13 6 7.7783 2.9669 -3.9766 14 8 8.0584 4.1976 -4.4712 15 6 9.3579 4.4982 -4.6645 16 1 10.1143 3.7402 -4.5233 17 6 9.7240 5.7810 -5.0448 18 7 8.8031 6.7040 -5.2163 19 14 11.5252 6.1974 -5.3134 20 1 12.3550 4.9927 -5.0581 21 1 11.7255 6.6482 -6.7140 22 1 11.9266 7.2821 -4.3820 23 6 6.4577 2.5343 -3.8991 24 6 6.1683 1.2881 -3.3929 25 6 3.5766 -1.3212 0.0906 26 6 2.0851 -1.1809 -0.0005 27 8 1.4130 -2.1872 -0.0814 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.5886 1.9854 0.6303 32 1 2.1754 1.6772 -1.0182 33 1 3.5455 0.9951 1.6118 34 1 4.1352 2.0563 0.3060 35 1 5.5283 -2.0248 -1.3006 36 1 7.4847 -1.7343 -2.7290 37 1 9.3356 0.2486 -2.7123 38 1 9.8361 2.4760 -3.6181 39 1 9.0591 7.6009 -5.4826 40 1 5.6585 3.1795 -4.2330 41 1 5.1430 0.9547 -3.3297 42 1 3.9242 -2.0178 -0.6723 43 1 3.8458 -1.6948 1.0785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255918714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = -20.111751 kcal Electronic energy + Delta-G solvation = -27555.862407 eV Core-core repulsion = 23568.585430 eV Total energy + Delta-G solvation = -3987.276977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.00964 -39.57162 -38.74524 -36.94980 -36.26400 -35.03784 -33.19022 -32.19216 -30.66393 -30.16677 -28.96695 -27.97344 -25.83131 -25.52528 -24.66220 -22.59915 -21.80299 -20.91551 -19.61092 -18.38807 -17.95846 -17.68043 -17.38055 -16.74949 -16.46036 -16.15584 -15.54743 -15.07970 -14.71164 -14.59599 -14.37541 -13.99418 -13.82722 -13.63841 -13.53308 -13.29927 -13.12510 -12.91175 -12.75532 -12.52686 -12.43709 -12.30048 -12.12807 -11.72810 -11.67165 -11.41506 -11.06276 -10.73967 -10.63641 -10.51675 -10.41694 -9.59495 -9.49101 -9.21445 -9.15933 -8.83573 -8.74561 -8.01358 -6.93335 -6.49571 -4.05173 1.15025 2.21391 2.36255 2.48055 2.60615 2.87687 3.11513 3.12143 3.17853 3.46548 3.94200 4.06867 4.36851 4.60771 4.65421 4.75160 4.78317 4.94055 5.02734 5.04008 5.09402 5.17825 5.22033 5.29086 5.43015 5.47713 5.52978 5.57218 5.69264 5.79753 5.85973 6.09622 6.21890 6.29026 6.39673 6.53592 6.73300 6.97976 7.01530 7.08629 7.21661 7.31980 7.40425 7.45837 7.73740 7.87080 7.96949 8.30975 8.96254 9.67883 10.68292 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.002518 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.695801 B =11115.181705 C =11892.637634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.604 5.604 3 C 0.098 3.902 4 C 0.098 3.902 5 N -0.626 5.626 6 C 0.551 3.449 7 O -0.502 6.502 8 C -0.275 4.275 9 C 0.036 3.964 10 C -0.188 4.188 11 C -0.041 4.041 12 C -0.246 4.246 13 C 0.171 3.829 14 O -0.172 6.172 15 C -0.389 4.389 16 H 0.094 0.906 17 C 0.039 3.961 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.200 4.200 24 C 0.003 3.997 25 C 0.101 3.899 26 C 0.509 3.491 27 O -0.549 6.549 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.270 0.730 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.037 -13.811 11.248 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.337 5.337 3 C -0.026 4.026 4 C -0.025 4.025 5 N -0.364 5.364 6 C 0.343 3.657 7 O -0.377 6.377 8 C -0.296 4.296 9 C 0.017 3.983 10 C -0.189 4.189 11 C -0.059 4.059 12 C -0.266 4.266 13 C 0.116 3.884 14 O -0.074 6.074 15 C -0.465 4.465 16 H 0.111 0.889 17 C -0.166 4.166 18 N -0.493 5.493 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.219 4.219 24 C -0.016 4.016 25 C -0.025 4.025 26 C 0.296 3.704 27 O -0.426 6.426 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.221 -13.247 10.958 20.530 hybrid contribution 0.761 0.204 0.095 0.794 sum -10.460 -13.042 11.052 20.042 Atomic orbital electron populations 1.21763 0.79307 1.03226 1.02349 1.47184 1.07736 1.06185 1.72559 1.21894 0.93486 0.84292 1.02904 1.21884 0.91823 0.91931 0.96854 1.48188 1.29560 1.07173 1.51494 1.18479 0.78900 0.90053 0.78230 1.91007 1.60069 1.26773 1.59882 1.22631 1.04374 0.97197 1.05415 1.22392 0.91016 0.96312 0.88608 1.18302 0.93619 0.95459 1.11529 1.20749 0.94405 0.95191 0.95562 1.20979 0.99640 0.96176 1.09777 1.19547 0.93163 0.85966 0.89765 1.83927 1.28623 1.25909 1.68968 1.21435 0.80800 0.96944 1.47340 0.88865 1.25339 1.00259 0.94413 0.96574 1.70030 1.33204 1.03299 1.42754 0.85630 0.80341 0.79017 0.78368 1.19009 1.20084 1.20089 1.20002 0.94144 0.97346 1.10445 1.20433 0.96292 0.92021 0.92839 1.21786 0.88443 0.87203 1.05090 1.20279 0.90901 0.82988 0.76192 1.90751 1.65805 1.35678 1.50407 0.92440 0.90280 0.91044 0.89282 0.90777 0.90652 0.86536 0.85812 0.85834 0.87520 0.85596 0.91957 0.86803 0.88184 0.85973 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.19 59.85 0.61 1.18 16 2 N -0.60 -5.50 3.20 -182.93 -0.59 -6.08 16 3 C 0.10 0.75 6.57 -4.51 -0.03 0.73 16 4 C 0.10 0.88 6.53 -3.63 -0.02 0.86 16 5 N -0.63 -6.72 2.98 -176.06 -0.53 -7.24 16 6 C 0.55 7.67 6.72 -13.04 -0.09 7.58 16 7 O -0.50 -9.11 11.97 5.17 0.06 -9.05 16 8 C -0.28 -3.33 9.11 -37.50 -0.34 -3.67 16 9 C 0.04 0.49 9.79 -37.19 -0.36 0.12 16 10 C -0.19 -3.35 4.43 -105.03 -0.47 -3.81 16 11 C -0.04 -0.77 9.78 -39.14 -0.38 -1.15 16 12 C -0.25 -5.49 9.10 -39.47 -0.36 -5.85 16 13 C 0.17 4.23 6.65 -38.88 -0.26 3.97 16 14 O -0.17 -4.96 9.74 0.75 0.01 -4.96 16 15 C -0.39 -10.89 9.41 30.91 0.29 -10.60 16 16 H 0.09 2.42 5.33 -52.48 -0.28 2.14 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 19 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.20 -4.44 9.97 -39.47 -0.39 -4.84 16 24 C 0.00 0.05 6.75 -39.15 -0.26 -0.21 16 25 C 0.10 0.89 6.33 -5.19 -0.03 0.86 16 26 C 0.51 5.47 7.57 -11.91 -0.09 5.38 16 27 O -0.55 -7.56 16.25 5.55 0.09 -7.47 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.66 7.23 -51.93 -0.38 0.29 16 30 H 0.07 0.35 7.80 -51.93 -0.41 -0.05 16 31 H 0.09 0.46 7.84 -51.93 -0.41 0.05 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.12 1.24 7.06 -51.93 -0.37 0.87 16 35 H 0.12 1.08 6.18 -52.49 -0.32 0.76 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 2.79 5.74 -52.48 -0.30 2.49 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.11 2.46 8.06 -52.48 -0.42 2.03 16 41 H 0.10 1.75 7.24 -52.48 -0.38 1.37 16 42 H 0.12 0.99 5.75 -51.93 -0.30 0.69 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -35.24 358.32 -7.34 -42.58 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.23 Total: 4.27 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.29 Total: -8.48 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.35 Total: -37.68 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.16 Total: -21.48 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.24 -7.34 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255918714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.468 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds