Wall clock time and date at job start Tue Mar 31 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45650 * 117.70834 * 2 1 4 4 C 1.52989 * 110.77772 * 158.09724 * 3 2 1 5 5 N 1.47267 * 108.18313 * 46.72619 * 4 3 2 6 6 C 1.34772 * 121.35077 * 118.47857 * 5 4 3 7 7 O 1.21724 * 120.00241 * 359.97438 * 6 5 4 8 8 C 1.46255 * 119.99865 * 179.97438 * 6 5 4 9 9 C 1.35030 * 120.00043 * 173.02157 * 8 6 5 10 10 C 1.46961 * 119.99770 * 346.79267 * 9 8 6 11 11 C 1.40030 * 120.09547 * 135.37090 * 10 9 8 12 12 C 1.37594 * 119.89080 * 179.97438 * 11 10 9 13 13 C 1.39177 * 120.10864 * 0.25290 * 12 11 10 14 14 O 1.35570 * 119.90120 * 179.74614 * 13 12 11 15 15 C 1.34776 * 117.00134 * 7.20618 * 14 13 12 16 16 H 1.08009 * 119.99915 * 6.21213 * 15 14 13 17 17 C 1.38718 * 120.00281 * 186.20751 * 15 14 13 18 18 N 1.31508 * 119.99821 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00228 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46711 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47116 * 120.00256 * 19 17 15 22 22 H 1.48496 * 109.46910 * 240.00154 * 19 17 15 23 23 C 1.39176 * 120.19730 * 359.49292 * 13 12 11 24 24 C 1.37594 * 120.10150 * 0.51045 * 23 13 12 25 25 C 1.47050 * 117.29526 * 298.74204 * 5 4 3 26 26 C 1.33380 * 117.70652 * 180.02562 * 2 1 3 27 27 O 1.21284 * 118.48997 * 4.32494 * 26 2 1 28 28 H 1.09003 * 109.47014 * 90.00206 * 1 2 3 29 29 H 1.08998 * 109.46911 * 209.99855 * 1 2 3 30 30 H 1.08999 * 109.47165 * 330.00481 * 1 2 3 31 31 H 1.09000 * 109.21157 * 37.76322 * 3 2 1 32 32 H 1.09000 * 109.21329 * 278.43294 * 3 2 1 33 33 H 1.08998 * 109.71787 * 287.05161 * 4 3 2 34 34 H 1.08994 * 109.71550 * 166.39932 * 4 3 2 35 35 H 1.07996 * 120.00126 * 353.02724 * 8 6 5 36 36 H 1.07993 * 119.99925 * 166.79115 * 9 8 6 37 37 H 1.07999 * 120.05036 * 359.95390 * 11 10 9 38 38 H 1.08008 * 119.94594 * 179.97438 * 12 11 10 39 39 H 0.96998 * 119.99774 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.95109 * 180.25419 * 23 13 12 41 41 H 1.08004 * 120.05148 * 179.76991 * 24 23 13 42 42 H 1.08997 * 109.56680 * 162.31413 * 25 5 4 43 43 H 1.08997 * 109.56721 * 282.67189 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1422 1.2895 0.0000 4 6 3.5695 1.1529 0.5336 5 7 4.1972 -0.0055 -0.1244 6 6 5.2928 0.1353 -0.8966 7 8 5.7832 1.2370 -1.0621 8 6 5.8924 -1.0356 -1.5356 9 6 6.9013 -0.8799 -2.4195 10 6 7.2052 0.4524 -2.9604 11 6 8.5327 0.8897 -3.0451 12 6 8.8125 2.1376 -3.5527 13 6 7.7783 2.9669 -3.9766 14 8 8.0584 4.1976 -4.4712 15 6 9.3579 4.4982 -4.6645 16 1 10.1143 3.7402 -4.5233 17 6 9.7240 5.7810 -5.0448 18 7 8.8031 6.7040 -5.2163 19 14 11.5252 6.1974 -5.3134 20 1 12.3550 4.9927 -5.0581 21 1 11.7255 6.6482 -6.7140 22 1 11.9266 7.2821 -4.3820 23 6 6.4577 2.5343 -3.8991 24 6 6.1683 1.2881 -3.3929 25 6 3.5766 -1.3212 0.0906 26 6 2.0851 -1.1809 -0.0005 27 8 1.4130 -2.1872 -0.0814 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.5886 1.9854 0.6303 32 1 2.1754 1.6772 -1.0182 33 1 3.5455 0.9951 1.6118 34 1 4.1352 2.0563 0.3060 35 1 5.5283 -2.0248 -1.3006 36 1 7.4847 -1.7343 -2.7290 37 1 9.3356 0.2486 -2.7123 38 1 9.8361 2.4760 -3.6181 39 1 9.0591 7.6009 -5.4826 40 1 5.6585 3.1795 -4.2330 41 1 5.1430 0.9547 -3.3297 42 1 3.9242 -2.0178 -0.6723 43 1 3.8458 -1.6948 1.0785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255918714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:27 Heat of formation + Delta-G solvation = -44.431287 kcal Electronic energy + Delta-G solvation = -27556.916981 eV Core-core repulsion = 23568.585430 eV Total energy + Delta-G solvation = -3988.331551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.87478 -40.88966 -40.23695 -38.34004 -37.41005 -35.94544 -34.64347 -33.95813 -31.83379 -31.47760 -29.93607 -29.27034 -27.43687 -26.53076 -25.65453 -23.85754 -23.40714 -22.23210 -20.65200 -19.85460 -19.21748 -18.83770 -18.57723 -18.07282 -17.27185 -17.03361 -16.55135 -16.36629 -16.25481 -15.96335 -15.74157 -15.52611 -15.17982 -14.83038 -14.71592 -14.40793 -14.27381 -14.21101 -13.85679 -13.60265 -13.54548 -13.49166 -13.10174 -13.07774 -12.92789 -12.67203 -12.40019 -12.32451 -12.18193 -12.08138 -11.49297 -11.27697 -10.91318 -10.66832 -10.39213 -9.93153 -9.80232 -9.54330 -8.58440 -8.48721 -6.15251 -0.04096 0.70726 1.07890 1.34620 1.41313 1.44809 1.53587 1.71077 2.07645 2.17359 2.38952 2.86748 3.22123 3.33548 3.50327 3.60132 3.79801 3.94185 4.10824 4.11732 4.13217 4.17742 4.32179 4.42134 4.47947 4.54826 4.57344 4.59851 4.71936 4.76573 4.84644 4.89882 5.03752 5.08933 5.11413 5.22212 5.25377 5.36584 5.47955 5.66537 5.73022 5.81354 6.02461 6.23477 6.26286 6.29943 6.94775 6.95977 7.24978 7.78077 8.75059 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.002518 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.695801 B =11115.181705 C =11892.637634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.604 5.604 3 C 0.102 3.898 4 C 0.094 3.906 5 N -0.619 5.619 6 C 0.539 3.461 7 O -0.554 6.554 8 C -0.243 4.243 9 C 0.015 3.985 10 C -0.157 4.157 11 C -0.047 4.047 12 C -0.255 4.255 13 C 0.127 3.873 14 O -0.231 6.231 15 C -0.412 4.412 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.021 2.979 20 H -0.250 1.250 21 H -0.267 1.267 22 H -0.268 1.268 23 C -0.216 4.216 24 C 0.005 3.995 25 C 0.102 3.898 26 C 0.503 3.497 27 O -0.584 6.584 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.148 0.852 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 -17.630 13.332 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.336 5.336 3 C -0.021 4.021 4 C -0.028 4.028 5 N -0.355 5.355 6 C 0.332 3.668 7 O -0.434 6.434 8 C -0.263 4.263 9 C -0.004 4.004 10 C -0.158 4.158 11 C -0.065 4.065 12 C -0.274 4.274 13 C 0.076 3.924 14 O -0.137 6.137 15 C -0.488 4.488 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.840 3.160 20 H -0.173 1.173 21 H -0.192 1.192 22 H -0.193 1.193 23 C -0.235 4.235 24 C -0.014 4.014 25 C -0.023 4.023 26 C 0.292 3.708 27 O -0.465 6.465 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.188 0.812 36 H 0.188 0.812 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.154 0.846 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.255 -17.133 13.086 24.320 hybrid contribution 0.384 0.978 -0.266 1.084 sum -10.871 -16.155 12.820 23.314 Atomic orbital electron populations 1.21868 0.78418 1.04149 1.02429 1.47320 1.08543 1.06219 1.71481 1.21917 0.93109 0.84223 1.02822 1.22008 0.91974 0.90691 0.98168 1.48202 1.28547 1.08595 1.50149 1.18968 0.79432 0.89957 0.78402 1.91017 1.61901 1.28760 1.61674 1.23099 1.01717 0.98456 1.03069 1.22628 0.92656 0.94922 0.90176 1.18864 0.92623 0.96881 1.07451 1.21178 0.96321 0.94176 0.94780 1.21111 0.98728 0.97409 1.10139 1.20022 0.94841 0.85731 0.91774 1.83889 1.29085 1.28210 1.72506 1.21892 0.81130 0.97750 1.48069 0.88056 1.26655 1.05618 0.93847 0.96021 1.70177 1.35954 1.03952 1.45766 0.84502 0.73788 0.79174 0.78554 1.17337 1.19186 1.19327 1.20181 0.93209 0.98849 1.11275 1.20647 0.97799 0.90970 0.91940 1.21984 0.87018 0.86108 1.07155 1.20603 0.91598 0.82894 0.75749 1.90746 1.66601 1.36810 1.52293 0.92798 0.91303 0.88195 0.86156 0.92101 0.88228 0.88585 0.81176 0.81206 0.83436 0.86304 0.91770 0.87883 0.86400 0.84550 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.19 127.77 1.30 2.24 16 2 N -0.60 -9.42 3.20 -851.83 -2.73 -12.14 16 3 C 0.10 1.33 6.57 86.54 0.57 1.90 16 4 C 0.09 1.47 6.53 86.23 0.56 2.03 16 5 N -0.62 -11.16 2.98 -829.15 -2.47 -13.64 16 6 C 0.54 13.25 6.72 86.33 0.58 13.83 16 7 O -0.55 -19.39 11.97 -4.42 -0.05 -19.45 16 8 C -0.24 -4.54 9.11 23.62 0.22 -4.32 16 9 C 0.02 0.33 9.79 23.82 0.23 0.56 16 10 C -0.16 -5.20 4.43 -20.13 -0.09 -5.29 16 11 C -0.05 -1.67 9.78 22.55 0.22 -1.45 16 12 C -0.25 -11.67 9.10 22.34 0.20 -11.47 16 13 C 0.13 6.73 6.65 22.72 0.15 6.89 16 14 O -0.23 -14.48 9.74 -20.22 -0.20 -14.68 16 15 C -0.41 -24.69 9.41 67.93 0.64 -24.05 16 16 H 0.10 5.58 5.33 -2.91 -0.02 5.56 16 17 C -0.02 -1.39 5.49 84.86 0.47 -0.92 16 18 N -0.92 -57.61 13.67 21.62 0.30 -57.31 16 19 Si 1.02 43.51 29.55 68.60 2.03 45.54 16 20 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 C -0.22 -10.13 9.97 22.34 0.22 -9.90 16 24 C 0.00 0.18 6.75 22.55 0.15 0.33 16 25 C 0.10 1.36 6.33 85.33 0.54 1.90 16 26 C 0.50 9.33 7.57 87.68 0.66 10.00 16 27 O -0.58 -14.80 16.25 -3.04 -0.05 -14.85 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 1.05 7.23 -2.39 -0.02 1.03 16 30 H 0.10 0.68 7.80 -2.39 -0.02 0.66 16 31 H 0.12 0.85 7.84 -2.39 -0.02 0.83 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.98 7.06 -2.39 -0.02 1.96 16 35 H 0.17 1.69 6.18 -2.91 -0.02 1.67 16 36 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 38 H 0.12 5.49 5.74 -2.91 -0.02 5.47 16 39 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 41 H 0.12 3.98 7.24 -2.91 -0.02 3.96 16 42 H 0.14 1.44 5.75 -2.39 -0.01 1.42 16 43 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -85.94 358.32 4.50 -81.44 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 1.05 Total: 22.82 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 6.63 Total: -17.73 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -4.91 Total: -83.09 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.30 Total: -48.98 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -85.94 4.50 -81.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255918714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.011 kcal (2) G-P(sol) polarization free energy of solvation -85.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds