Wall clock time and date at job start Tue Mar 31 2020 05:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47514 * 17.26893 * 3 2 1 5 5 C 1.36941 * 120.00165 * 270.00756 * 4 3 2 6 6 H 1.07998 * 119.99718 * 189.06367 * 5 4 3 7 7 C 1.38810 * 119.99790 * 9.06197 * 5 4 3 8 8 N 1.31608 * 120.00469 * 25.26666 * 7 5 4 9 9 Si 1.86803 * 119.99601 * 205.26562 * 7 5 4 10 10 H 1.48498 * 109.47217 * 89.99972 * 9 7 5 11 11 H 1.48499 * 109.46897 * 210.00227 * 9 7 5 12 12 H 1.48503 * 109.47205 * 329.99926 * 9 7 5 13 13 C 1.46500 * 119.99734 * 90.00124 * 4 3 2 14 14 C 1.50694 * 109.46995 * 91.18282 * 13 4 3 15 15 O 1.21273 * 120.00145 * 359.97438 * 14 13 4 16 16 N 1.34780 * 120.00034 * 179.97438 * 14 13 4 17 17 C 1.46503 * 119.99808 * 0.02562 * 16 14 13 18 18 C 1.39258 * 120.00062 * 179.97438 * 16 14 13 19 19 C 1.38841 * 120.17063 * 270.00663 * 18 16 14 20 20 C 1.38017 * 120.07403 * 180.02562 * 19 18 16 21 21 C 1.38578 * 120.41911 * 359.97139 * 20 19 18 22 22 C 1.37779 * 120.33622 * 0.02562 * 21 20 19 23 23 C 1.39742 * 119.91461 * 359.97438 * 22 21 20 24 24 C 1.47384 * 120.20244 * 180.02562 * 23 22 21 25 25 O 1.21514 * 119.99826 * 180.02562 * 24 23 22 26 26 O 1.34753 * 119.99958 * 0.02562 * 24 23 22 27 27 C 1.45205 * 116.99971 * 180.02562 * 26 24 23 28 28 H 4.40640 * 5.51380 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.46752 * 257.27297 * 3 2 1 30 30 H 1.08992 * 109.47456 * 137.27392 * 3 2 1 31 31 H 0.97000 * 120.00389 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47033 * 331.18253 * 13 4 3 33 33 H 1.09008 * 109.47106 * 211.18502 * 13 4 3 34 34 H 1.08992 * 109.46982 * 269.99205 * 17 16 14 35 35 H 1.09003 * 109.47050 * 29.99792 * 17 16 14 36 36 H 1.09002 * 109.46803 * 149.99389 * 17 16 14 37 37 H 1.08000 * 119.96551 * 359.97407 * 19 18 16 38 38 H 1.08002 * 119.79353 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.83173 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.03503 * 179.72422 * 22 21 20 41 41 H 1.09001 * 109.47263 * 60.00159 * 27 26 24 42 42 H 1.09001 * 109.47217 * 179.97438 * 27 26 24 43 43 H 1.08995 * 109.47117 * 300.00361 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3180 -0.4100 5 6 3.3636 -2.2865 0.5308 6 1 3.8596 -3.2043 0.2515 7 6 2.9578 -2.0885 1.8434 8 7 1.9621 -1.2695 2.1080 9 14 3.8250 -2.9845 3.2343 10 1 4.9598 -2.1604 3.7225 11 1 2.8681 -3.2173 4.3457 12 1 4.3366 -4.2882 2.7404 13 6 3.3794 -1.6007 -1.8266 14 6 4.8106 -1.2720 -2.1647 15 8 5.5533 -0.8434 -1.3071 16 7 5.2654 -1.4543 -3.4203 17 6 4.3681 -1.9716 -4.4565 18 6 6.5879 -1.1501 -3.7329 19 6 6.9264 0.1236 -4.1697 20 6 8.2376 0.4228 -4.4795 21 6 9.2251 -0.5417 -4.3574 22 6 8.9083 -1.8111 -3.9255 23 6 7.5852 -2.1293 -3.6080 24 6 7.2393 -3.4850 -3.1448 25 8 6.0875 -3.7578 -2.8702 26 8 8.2004 -4.4220 -3.0259 27 6 7.7872 -5.7354 -2.5647 28 1 -1.0497 -0.0004 -0.0003 29 1 3.0092 0.2272 1.0024 30 1 3.0091 0.7557 -0.6972 31 1 1.6783 -1.1315 3.0252 32 1 2.7127 -0.9931 -2.4385 33 1 3.1926 -2.6563 -2.0239 34 1 4.4224 -3.0600 -4.4738 35 1 3.3457 -1.6621 -4.2393 36 1 4.6686 -1.5773 -5.4272 37 1 6.1626 0.8809 -4.2680 38 1 8.4958 1.4150 -4.8193 39 1 10.2482 -0.2971 -4.6020 40 1 9.6811 -2.5603 -3.8363 41 1 7.0571 -6.1513 -3.2591 42 1 8.6554 -6.3926 -2.5142 43 1 7.3388 -5.6485 -1.5750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281276342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:31 Heat of formation + Delta-G solvation = 25.722697 kcal Electronic energy + Delta-G solvation = -28806.661816 eV Core-core repulsion = 24821.372370 eV Total energy + Delta-G solvation = -3985.289446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.82262 -39.49653 -38.21243 -36.32964 -35.73821 -34.86002 -31.65846 -31.44518 -31.41800 -30.27908 -27.79834 -27.13136 -26.33495 -25.87624 -24.06283 -23.01904 -21.69598 -20.87746 -19.08585 -17.94818 -17.49947 -17.07385 -16.61468 -16.45605 -16.23249 -15.93426 -15.62307 -15.17376 -14.83036 -14.34817 -14.15661 -13.57364 -13.48847 -13.42923 -13.26053 -13.08907 -12.60275 -12.45219 -12.38542 -12.35475 -12.14982 -11.91804 -11.52327 -11.38362 -11.25864 -10.90885 -10.73523 -10.63511 -10.36210 -10.18013 -9.87248 -9.33350 -9.15708 -8.96314 -8.87481 -8.68187 -8.43932 -8.28870 -7.04156 -5.73026 -3.06066 0.61822 1.17258 2.60114 2.71167 3.24397 3.42962 3.47844 3.53339 3.55571 3.65248 4.22096 4.45755 4.62965 4.65426 4.75050 4.83988 5.09538 5.12644 5.18791 5.21463 5.27658 5.35223 5.41501 5.52809 5.57253 5.60196 5.70507 5.75254 5.89153 5.93732 6.03036 6.11889 6.22905 6.25807 6.33808 6.46146 6.52497 6.73118 7.14085 7.36893 7.47228 7.74669 7.84441 7.86017 8.27503 8.93777 9.15984 9.26209 9.81393 10.22641 11.30692 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.004374 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.849585 B = 6400.307036 C = 7542.006548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.089 4.089 3 C 0.270 3.730 4 N -0.564 5.564 5 C -0.252 4.252 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.281 1.281 13 C 0.142 3.858 14 C 0.497 3.503 15 O -0.512 6.512 16 N -0.590 5.590 17 C 0.091 3.909 18 C 0.220 3.780 19 C -0.126 4.126 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.060 4.060 23 C -0.126 4.126 24 C 0.503 3.497 25 O -0.478 6.478 26 O -0.362 6.362 27 C 0.039 3.961 28 H 0.190 0.810 29 H 0.099 0.901 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 -0.674 -17.968 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.092 4.092 3 C 0.145 3.855 4 N -0.281 5.281 5 C -0.380 4.380 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.215 1.215 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.009 3.991 14 C 0.285 3.715 15 O -0.384 6.384 16 N -0.325 5.325 17 C -0.051 4.051 18 C 0.129 3.871 19 C -0.146 4.146 20 C -0.097 4.097 21 C -0.156 4.156 22 C -0.078 4.078 23 C -0.129 4.129 24 C 0.346 3.654 25 O -0.364 6.364 26 O -0.279 6.279 27 C -0.055 4.055 28 H 0.207 0.793 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.718 -0.558 -17.129 20.761 hybrid contribution 0.173 -0.829 0.946 1.270 sum 11.891 -1.388 -16.184 20.131 Atomic orbital electron populations 1.24129 0.95247 1.05071 1.07807 1.24191 0.95110 0.95783 0.94122 1.17810 0.82731 0.84863 1.00113 1.43696 1.73369 1.10816 1.00198 1.19143 1.32268 0.98187 0.88422 0.90702 1.24723 0.97197 0.99607 0.97768 1.70165 1.23960 1.40377 1.18631 0.86372 0.79550 0.79200 0.82261 1.21454 1.21993 1.20680 1.20672 0.89580 1.01105 0.87712 1.23365 0.93071 0.75749 0.79355 1.90646 1.58453 1.43164 1.46127 1.45722 1.07612 1.67734 1.11444 1.21725 0.93825 0.99735 0.89855 1.17583 0.84996 0.91353 0.93212 1.21380 0.97252 0.95554 1.00373 1.21290 0.92328 0.99435 0.96629 1.21124 0.99828 0.93119 1.01521 1.21365 0.94595 0.97128 0.94753 1.19509 0.94943 0.91351 1.07102 1.20991 0.83603 0.85319 0.75467 1.90892 1.20440 1.80648 1.44438 1.86504 1.40152 1.22324 1.78927 1.23241 1.01690 0.80193 1.00398 0.79275 0.88316 0.94632 0.93543 0.91227 0.89870 0.92184 0.90332 0.91991 0.84874 0.85121 0.85115 0.84440 0.91940 0.88256 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.05 19.25 29.55 0.57 -6.49 16 2 C -0.09 -2.24 11.45 -37.12 -0.43 -2.66 16 3 C 0.27 6.85 5.46 -6.83 -0.04 6.81 16 4 N -0.56 -14.67 1.98 -177.95 -0.35 -15.03 16 5 C -0.25 -7.26 9.69 -15.06 -0.15 -7.40 16 6 H 0.08 2.20 7.95 -52.49 -0.42 1.78 16 7 C 0.01 0.15 4.88 -17.44 -0.09 0.07 16 8 N -0.89 -26.10 9.18 55.49 0.51 -25.59 16 9 Si 0.90 23.07 29.62 -169.99 -5.04 18.04 16 10 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 13 C 0.14 3.01 4.70 -5.20 -0.02 2.99 16 14 C 0.50 10.45 6.79 -10.99 -0.07 10.38 16 15 O -0.51 -13.02 16.40 5.56 0.09 -12.93 16 16 N -0.59 -9.80 1.51 -120.60 -0.18 -9.98 16 17 C 0.09 1.14 9.88 59.85 0.59 1.73 16 18 C 0.22 3.40 4.44 -83.48 -0.37 3.03 16 19 C -0.13 -1.59 9.96 -39.44 -0.39 -1.98 16 20 C -0.08 -0.77 10.03 -39.54 -0.40 -1.17 16 21 C -0.14 -1.32 10.02 -39.62 -0.40 -1.71 16 22 C -0.06 -0.69 9.61 -39.19 -0.38 -1.07 16 23 C -0.13 -1.89 5.89 -104.83 -0.62 -2.51 16 24 C 0.50 8.26 7.89 34.45 0.27 8.53 16 25 O -0.48 -9.08 12.91 -19.28 -0.25 -9.33 16 26 O -0.36 -5.02 9.82 -40.64 -0.40 -5.42 16 27 C 0.04 0.43 10.57 101.05 1.07 1.50 16 28 H 0.19 3.67 7.80 -54.11 -0.42 3.25 16 29 H 0.10 2.78 6.35 -51.93 -0.33 2.45 16 30 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.07 1.29 7.32 -51.93 -0.38 0.91 16 33 H 0.08 1.75 8.01 -51.92 -0.42 1.34 16 34 H 0.06 0.79 7.18 -51.93 -0.37 0.42 16 35 H 0.08 0.89 6.44 -51.93 -0.33 0.56 16 36 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.14 1.33 7.61 -52.49 -0.40 0.93 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -36.93 374.93 -6.39 -43.32 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.58 Total: 1.23 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.84 Total: 10.03 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.03 Total: -50.60 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.56 Total: -27.67 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.04 Total: 18.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.93 -6.39 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281276342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.046 kcal (2) G-P(sol) polarization free energy of solvation -36.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds