Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99945 * 2 1 4 4 N 1.46498 * 109.47501 * 124.99812 * 3 2 1 5 5 C 1.46768 * 124.34879 * 89.99466 * 4 3 2 6 6 C 1.54480 * 105.55098 * 197.08340 * 5 4 3 7 7 C 1.54631 * 101.76472 * 334.54015 * 6 5 4 8 8 H 1.09001 * 110.48844 * 143.60601 * 7 6 5 9 9 N 1.46492 * 110.49042 * 266.12266 * 7 6 5 10 10 C 1.46502 * 120.00145 * 59.99348 * 9 7 6 11 11 S 1.65604 * 120.00042 * 240.00386 * 9 7 6 12 12 O 1.42104 * 104.27482 * 206.06921 * 11 9 7 13 13 O 1.42104 * 104.27381 * 333.92042 * 11 9 7 14 14 C 1.81398 * 104.45067 * 89.99492 * 11 9 7 15 15 C 1.53007 * 109.46887 * 180.02562 * 14 11 9 16 16 C 1.52998 * 109.47191 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47211 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00142 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00195 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46726 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46859 * 119.99655 * 21 19 17 24 24 H 1.48497 * 109.47034 * 239.99830 * 21 19 17 25 25 C 1.34621 * 124.47196 * 270.02709 * 4 3 2 26 26 O 1.21286 * 124.90539 * 359.55259 * 25 4 3 27 27 H 1.08006 * 119.99659 * 359.97438 * 1 2 3 28 28 H 1.07992 * 119.99937 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00163 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47506 * 4.99893 * 3 2 1 31 31 H 1.08998 * 109.47494 * 244.99712 * 3 2 1 32 32 H 1.09002 * 110.24468 * 78.03845 * 5 4 3 33 33 H 1.09002 * 110.24463 * 316.12602 * 5 4 3 34 34 H 1.08995 * 110.97082 * 92.66028 * 6 5 4 35 35 H 1.08996 * 110.96783 * 216.38630 * 6 5 4 36 36 H 1.08998 * 109.46807 * 90.00661 * 10 9 7 37 37 H 1.09003 * 109.47380 * 210.00141 * 10 9 7 38 38 H 1.09001 * 109.47442 * 330.00739 * 10 9 7 39 39 H 1.08999 * 109.47187 * 300.00030 * 14 11 9 40 40 H 1.08995 * 109.46945 * 60.00482 * 14 11 9 41 41 H 1.08999 * 109.47018 * 299.99872 * 15 14 11 42 42 H 1.09000 * 109.47163 * 59.99608 * 15 14 11 43 43 H 1.09006 * 109.47118 * 300.00306 * 16 15 14 44 44 H 1.08999 * 109.46827 * 59.99658 * 16 15 14 45 45 H 0.97001 * 120.00287 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3792 0.8508 1.0760 6 6 4.8128 0.6667 2.5472 7 6 3.8828 1.6634 3.2771 8 1 3.5772 1.2624 4.2436 9 7 4.5497 2.9565 3.4476 10 6 4.9978 3.7100 2.2738 11 16 4.7974 3.5665 4.9671 12 8 4.8572 4.9731 4.7745 13 8 3.7701 2.9777 5.7528 14 6 6.4210 2.9211 5.4549 15 6 6.7672 3.4201 6.8593 16 6 8.1363 2.8753 7.2710 17 6 8.4776 3.3673 8.6539 18 1 7.7869 4.0045 9.1861 19 6 9.6716 3.0040 9.2397 20 7 10.5126 2.2276 8.5918 21 14 10.0944 3.6133 10.9542 22 1 8.9890 4.4639 11.4637 23 1 10.2823 2.4516 11.8600 24 1 11.3477 4.4081 10.9020 25 6 2.6901 1.8001 2.3566 26 8 1.6158 2.2638 2.6757 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4027 -0.9313 32 1 5.0149 1.5874 0.5847 33 1 4.4270 -0.1009 0.5467 34 1 4.6307 -0.3542 2.8827 35 1 5.8596 0.9386 2.6822 36 1 4.1987 4.3720 1.9403 37 1 5.8748 4.3022 2.5352 38 1 5.2532 3.0165 1.4726 39 1 6.3943 1.8314 5.4532 40 1 7.1764 3.2671 4.7495 41 1 6.7938 4.5098 6.8613 42 1 6.0116 3.0738 7.5645 43 1 8.1093 1.7856 7.2690 44 1 8.8920 3.2212 6.5658 45 1 11.3525 1.9716 9.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281630998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = -79.961084 kcal Electronic energy + Delta-G solvation = -26747.839405 eV Core-core repulsion = 22893.411118 eV Total energy + Delta-G solvation = -3854.428288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97922 -36.99762 -36.99323 -36.37272 -35.75605 -34.70390 -34.21133 -32.21075 -31.10316 -28.32014 -27.85375 -26.78829 -25.29903 -23.73877 -22.26200 -20.74028 -20.49726 -19.72282 -19.02142 -17.96391 -17.28126 -16.83012 -16.68303 -15.98486 -15.85138 -15.56263 -14.86101 -14.69825 -14.51567 -14.45809 -14.14382 -14.08206 -13.46730 -13.44410 -13.15398 -12.80349 -12.64794 -12.44312 -12.29592 -12.11858 -12.00055 -11.95867 -11.81105 -11.72209 -11.57184 -11.35586 -11.21386 -10.95126 -10.85896 -10.50150 -10.39774 -9.98376 -9.89663 -9.51127 -9.23805 -9.08609 -8.95338 -8.43085 -6.08023 -4.10837 0.31682 1.72365 2.15419 2.74334 2.83864 3.28332 3.36021 3.41213 3.91071 3.94935 4.10860 4.20929 4.40611 4.41955 4.48148 4.59137 4.63214 4.71794 4.84319 4.93790 5.10617 5.13087 5.16758 5.26844 5.28669 5.30291 5.45503 5.48838 5.51557 5.63107 5.69731 5.85480 6.11062 6.16903 6.18022 6.28059 6.32557 6.41326 6.75096 6.83955 7.54223 7.63721 7.89202 7.90198 8.30634 8.95617 9.54148 11.03181 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.002490 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.942774 B =11241.113376 C =11565.837159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.182 4.182 3 C 0.154 3.846 4 N -0.617 5.617 5 C 0.100 3.900 6 C -0.151 4.151 7 C 0.118 3.882 8 H 0.137 0.863 9 N -0.989 5.989 10 C 0.085 3.915 11 S 2.593 3.407 12 O -0.953 6.953 13 O -0.951 6.951 14 C -0.606 4.606 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.518 3.482 26 O -0.510 6.510 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 -6.082 -22.299 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.033 3.967 4 N -0.353 5.353 5 C -0.023 4.023 6 C -0.190 4.190 7 C 0.008 3.992 8 H 0.155 0.845 9 N -0.825 5.825 10 C -0.060 4.060 11 S 2.690 3.310 12 O -0.943 6.943 13 O -0.942 6.942 14 C -0.738 4.738 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.302 3.698 26 O -0.383 6.383 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.491 -5.307 -21.747 26.136 hybrid contribution 0.973 -0.284 0.581 1.169 sum -12.517 -5.591 -21.166 25.218 Atomic orbital electron populations 1.23933 0.95909 1.02247 0.98356 1.23254 0.96367 0.98719 1.01782 1.20461 0.91894 0.96098 0.88276 1.48325 1.12964 1.62889 1.11093 1.22223 0.81950 1.00233 0.97908 1.23128 1.01450 1.00384 0.94083 1.21539 0.91446 0.84633 1.01617 0.84549 1.57612 1.71793 1.29226 1.23895 1.21635 1.00303 0.95890 0.88167 1.05789 0.77908 0.74793 0.72498 1.93575 1.87812 1.28876 1.84045 1.93582 1.53836 1.78730 1.68031 1.30585 1.20907 1.12715 1.09548 1.21523 1.03226 1.00783 0.89083 1.19064 0.88739 0.96482 0.96428 1.21294 1.03366 1.30770 1.00931 0.92296 1.25020 0.96316 0.95055 0.98015 1.69965 1.09923 1.35827 1.37749 0.86499 0.78408 0.78673 0.84249 1.19585 1.20935 1.20945 1.21057 0.88857 0.76851 0.82997 1.90741 1.25862 1.43853 1.77828 0.88261 0.88189 0.87140 0.89581 0.89417 0.90488 0.90020 0.88409 0.87715 0.92479 0.90179 0.90668 0.85282 0.85318 0.91557 0.91504 0.96077 0.96107 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 14.32 29.01 0.42 -0.76 16 2 C -0.18 -1.26 9.85 -36.03 -0.35 -1.62 16 3 C 0.15 1.09 6.38 -5.19 -0.03 1.06 16 4 N -0.62 -5.19 2.92 -173.72 -0.51 -5.69 16 5 C 0.10 0.52 6.57 -3.12 -0.02 0.50 16 6 C -0.15 -0.93 6.44 -25.10 -0.16 -1.09 16 7 C 0.12 1.26 3.39 -67.94 -0.23 1.03 16 8 H 0.14 1.57 6.91 -51.93 -0.36 1.21 16 9 N -0.99 -11.49 3.06 -114.62 -0.35 -11.84 16 10 C 0.08 0.78 9.42 59.85 0.56 1.34 16 11 S 2.59 39.37 5.37 -107.50 -0.58 38.79 16 12 O -0.95 -17.16 17.09 -57.54 -0.98 -18.14 16 13 O -0.95 -17.41 16.58 -57.54 -0.95 -18.37 16 14 C -0.61 -8.83 6.18 37.16 0.23 -8.60 16 15 C -0.11 -2.12 5.16 -26.73 -0.14 -2.25 16 16 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 17 C -0.53 -14.62 9.11 -34.44 -0.31 -14.94 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.52 6.42 7.04 -10.77 -0.08 6.35 16 26 O -0.51 -8.66 17.60 5.55 0.10 -8.56 16 27 H 0.10 0.72 7.84 -52.48 -0.41 0.31 16 28 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 29 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 30 H 0.09 0.73 7.58 -51.93 -0.39 0.33 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.30 6.19 -51.93 -0.32 -0.02 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.67 7.79 -51.93 -0.40 0.26 16 38 H 0.07 0.46 4.77 -51.93 -0.25 0.21 16 39 H 0.13 1.61 8.14 -51.92 -0.42 1.18 16 40 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -37.99 383.79 -9.30 -47.30 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -7.17 Total: -3.39 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.35 Total: -16.83 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.12 Total: -42.99 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.84 Total: -45.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 39.37 SS G_CDS: -0.58 Total: 38.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.99 -9.30 -47.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281630998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.666 kcal (2) G-P(sol) polarization free energy of solvation -37.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds