Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99945 * 2 1 4 4 N 1.46498 * 109.47501 * 124.99812 * 3 2 1 5 5 C 1.46768 * 124.34879 * 89.99466 * 4 3 2 6 6 C 1.54480 * 105.55098 * 197.08340 * 5 4 3 7 7 C 1.54631 * 101.76472 * 334.54015 * 6 5 4 8 8 H 1.09001 * 110.48844 * 143.60601 * 7 6 5 9 9 N 1.46492 * 110.49042 * 266.12266 * 7 6 5 10 10 C 1.46502 * 120.00145 * 59.99348 * 9 7 6 11 11 S 1.65604 * 120.00042 * 240.00386 * 9 7 6 12 12 O 1.42104 * 104.27482 * 206.06921 * 11 9 7 13 13 O 1.42104 * 104.27381 * 333.92042 * 11 9 7 14 14 C 1.81398 * 104.45067 * 89.99492 * 11 9 7 15 15 C 1.53007 * 109.46887 * 180.02562 * 14 11 9 16 16 C 1.52998 * 109.47191 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47211 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00142 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00195 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46726 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46859 * 119.99655 * 21 19 17 24 24 H 1.48497 * 109.47034 * 239.99830 * 21 19 17 25 25 C 1.34621 * 124.47196 * 270.02709 * 4 3 2 26 26 O 1.21286 * 124.90539 * 359.55259 * 25 4 3 27 27 H 1.08006 * 119.99659 * 359.97438 * 1 2 3 28 28 H 1.07992 * 119.99937 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00163 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47506 * 4.99893 * 3 2 1 31 31 H 1.08998 * 109.47494 * 244.99712 * 3 2 1 32 32 H 1.09002 * 110.24468 * 78.03845 * 5 4 3 33 33 H 1.09002 * 110.24463 * 316.12602 * 5 4 3 34 34 H 1.08995 * 110.97082 * 92.66028 * 6 5 4 35 35 H 1.08996 * 110.96783 * 216.38630 * 6 5 4 36 36 H 1.08998 * 109.46807 * 90.00661 * 10 9 7 37 37 H 1.09003 * 109.47380 * 210.00141 * 10 9 7 38 38 H 1.09001 * 109.47442 * 330.00739 * 10 9 7 39 39 H 1.08999 * 109.47187 * 300.00030 * 14 11 9 40 40 H 1.08995 * 109.46945 * 60.00482 * 14 11 9 41 41 H 1.08999 * 109.47018 * 299.99872 * 15 14 11 42 42 H 1.09000 * 109.47163 * 59.99608 * 15 14 11 43 43 H 1.09006 * 109.47118 * 300.00306 * 16 15 14 44 44 H 1.08999 * 109.46827 * 59.99658 * 16 15 14 45 45 H 0.97001 * 120.00287 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3792 0.8508 1.0760 6 6 4.8128 0.6667 2.5472 7 6 3.8828 1.6634 3.2771 8 1 3.5772 1.2624 4.2436 9 7 4.5497 2.9565 3.4476 10 6 4.9978 3.7100 2.2738 11 16 4.7974 3.5665 4.9671 12 8 4.8572 4.9731 4.7745 13 8 3.7701 2.9777 5.7528 14 6 6.4210 2.9211 5.4549 15 6 6.7672 3.4201 6.8593 16 6 8.1363 2.8753 7.2710 17 6 8.4776 3.3673 8.6539 18 1 7.7869 4.0045 9.1861 19 6 9.6716 3.0040 9.2397 20 7 10.5126 2.2276 8.5918 21 14 10.0944 3.6133 10.9542 22 1 8.9890 4.4639 11.4637 23 1 10.2823 2.4516 11.8600 24 1 11.3477 4.4081 10.9020 25 6 2.6901 1.8001 2.3566 26 8 1.6158 2.2638 2.6757 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4027 -0.9313 32 1 5.0149 1.5874 0.5847 33 1 4.4270 -0.1009 0.5467 34 1 4.6307 -0.3542 2.8827 35 1 5.8596 0.9386 2.6822 36 1 4.1987 4.3720 1.9403 37 1 5.8748 4.3022 2.5352 38 1 5.2532 3.0165 1.4726 39 1 6.3943 1.8314 5.4532 40 1 7.1764 3.2671 4.7495 41 1 6.7938 4.5098 6.8613 42 1 6.0116 3.0738 7.5645 43 1 8.1093 1.7856 7.2690 44 1 8.8920 3.2212 6.5658 45 1 11.3525 1.9716 9.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281630998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -107.736286 kcal Electronic energy + Delta-G solvation = -26749.043828 eV Core-core repulsion = 22893.411118 eV Total energy + Delta-G solvation = -3855.632711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74637 -38.32139 -37.92613 -37.20364 -36.97782 -36.45684 -34.85806 -34.15396 -31.73192 -29.65312 -29.00431 -27.45258 -26.09649 -25.52482 -22.96630 -22.23881 -21.31556 -20.44961 -20.02163 -19.08549 -18.57070 -18.08390 -17.66939 -17.31165 -16.84298 -16.52941 -16.48038 -15.80553 -15.49567 -15.44897 -14.99435 -14.89474 -14.49488 -14.30155 -14.16778 -14.05319 -13.85407 -13.61772 -13.50481 -13.26226 -13.22839 -13.00519 -12.96861 -12.76840 -12.69661 -12.60741 -12.35605 -12.34383 -12.13990 -11.97058 -11.73928 -11.39270 -11.33713 -11.06099 -10.55980 -10.45707 -9.97841 -9.73006 -8.21762 -6.31658 -0.89148 1.14043 1.21349 1.39917 1.41391 1.53956 1.79663 2.15105 2.40728 2.77975 3.07082 3.12045 3.21533 3.42437 3.67550 3.87522 3.90741 3.93834 3.97146 4.14095 4.16080 4.34535 4.40761 4.41242 4.54396 4.65516 4.70430 4.75378 4.84240 4.94485 4.95724 4.97677 5.07383 5.09003 5.14832 5.40918 5.47749 5.52796 5.63677 5.66240 5.75600 5.81536 6.04526 6.22052 6.83734 7.04834 7.37376 8.89588 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.002490 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.942774 B =11241.113376 C =11565.837159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.181 4.181 3 C 0.148 3.852 4 N -0.605 5.605 5 C 0.094 3.906 6 C -0.142 4.142 7 C 0.107 3.893 8 H 0.121 0.879 9 N -0.982 5.982 10 C 0.076 3.924 11 S 2.608 3.392 12 O -0.986 6.986 13 O -0.990 6.990 14 C -0.593 4.593 15 C -0.109 4.109 16 C 0.033 3.967 17 C -0.552 4.552 18 H 0.056 0.944 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.276 1.276 25 C 0.506 3.494 26 O -0.573 6.573 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -7.337 -23.977 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.200 4.200 3 C 0.027 3.973 4 N -0.338 5.338 5 C -0.027 4.027 6 C -0.181 4.181 7 C -0.003 4.003 8 H 0.139 0.861 9 N -0.821 5.821 10 C -0.068 4.068 11 S 2.707 3.293 12 O -0.977 6.977 13 O -0.980 6.980 14 C -0.725 4.725 15 C -0.148 4.148 16 C -0.005 4.005 17 C -0.590 4.590 18 H 0.075 0.925 19 C -0.194 4.194 20 N -0.567 5.567 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C 0.291 3.709 26 O -0.451 6.451 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.972 -6.575 -23.460 27.147 hybrid contribution 0.493 0.068 1.005 1.122 sum -11.479 -6.507 -22.455 26.045 Atomic orbital electron populations 1.24058 0.96432 1.02393 0.98974 1.23385 0.96296 0.99168 1.01176 1.20634 0.92036 0.95551 0.89057 1.48447 1.14448 1.61012 1.09916 1.22581 0.79923 1.02432 0.97745 1.23232 1.01415 0.99686 0.93768 1.21750 0.92193 0.84994 1.01367 0.86141 1.57236 1.71776 1.29993 1.23067 1.21915 1.00100 0.96633 0.88131 1.05021 0.77518 0.73833 0.72953 1.93525 1.88193 1.31135 1.84807 1.93531 1.55503 1.79118 1.69863 1.30433 1.20958 1.14324 1.06792 1.21345 1.00517 1.00641 0.92315 1.18951 0.90974 0.95601 0.94974 1.21764 1.03686 1.30926 1.02615 0.92536 1.25869 0.96272 0.95208 1.02008 1.70056 1.10389 1.36771 1.39458 0.85483 0.78278 0.78338 0.79484 1.19128 1.20215 1.20192 1.21445 0.88419 0.76537 0.84505 1.90701 1.28291 1.46971 1.79177 0.89291 0.87099 0.85440 0.91805 0.85933 0.88221 0.86873 0.86736 0.85549 0.94047 0.89124 0.86904 0.82666 0.82604 0.91843 0.91894 0.97369 0.97378 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.32 67.78 0.97 -1.51 16 2 C -0.18 -2.20 9.85 25.65 0.25 -1.94 16 3 C 0.15 1.82 6.38 85.63 0.55 2.37 16 4 N -0.61 -8.77 2.92 -822.00 -2.40 -11.18 16 5 C 0.09 0.54 6.57 86.83 0.57 1.11 16 6 C -0.14 -1.19 6.44 31.65 0.20 -0.99 16 7 C 0.11 2.15 3.39 44.99 0.15 2.30 16 8 H 0.12 2.78 6.91 -2.39 -0.02 2.77 16 9 N -0.98 -21.58 3.06 -516.55 -1.58 -23.16 16 10 C 0.08 1.23 9.42 127.77 1.20 2.44 16 11 S 2.61 78.64 5.37 -56.49 -0.30 78.34 16 12 O -0.99 -35.79 17.09 -127.65 -2.18 -37.97 16 13 O -0.99 -37.22 16.58 -127.65 -2.12 -39.34 16 14 C -0.59 -16.33 6.18 71.98 0.44 -15.88 16 15 C -0.11 -4.29 5.16 30.60 0.16 -4.14 16 16 C 0.03 1.65 4.97 29.85 0.15 1.80 16 17 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 18 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 19 C 0.00 0.27 5.46 84.65 0.46 0.73 16 20 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 21 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 C 0.51 12.37 7.04 87.87 0.62 12.99 16 26 O -0.57 -20.49 17.60 -3.05 -0.05 -20.55 16 27 H 0.09 1.37 7.84 -2.91 -0.02 1.35 16 28 H 0.11 1.23 8.06 -2.91 -0.02 1.20 16 29 H 0.13 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.06 1.09 7.58 -2.39 -0.02 1.07 16 31 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.20 6.19 -2.39 -0.01 0.18 16 33 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.13 0.59 8.08 -2.39 -0.02 0.57 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 1.30 7.79 -2.39 -0.02 1.28 16 38 H 0.11 0.92 4.77 -2.39 -0.01 0.91 16 39 H 0.16 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.16 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -86.18 383.79 0.60 -85.58 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.96 Total: 7.74 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 5.96 Total: -31.38 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -3.70 Total: -88.21 kcal Atomic # 8 Polarization: -93.51 SS G_CDS: -4.35 Total: -97.86 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 78.64 SS G_CDS: -0.30 Total: 78.34 kcal Total: -86.18 0.60 -85.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281630998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.157 kcal (2) G-P(sol) polarization free energy of solvation -86.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds