Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99996 * 2 1 4 4 O 1.21591 * 119.99614 * 175.34750 * 3 2 1 5 5 N 1.34776 * 120.00360 * 355.34455 * 3 2 1 6 6 C 1.46504 * 119.99894 * 353.78456 * 5 3 2 7 7 C 1.50699 * 109.46754 * 96.12523 * 6 5 3 8 8 H 1.07997 * 120.00288 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99663 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00094 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99670 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47381 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47170 * 120.00291 * 11 9 7 14 14 H 1.48502 * 109.47053 * 239.99953 * 11 9 7 15 15 C 1.46500 * 119.99989 * 173.78364 * 5 3 2 16 16 C 1.53001 * 109.47102 * 85.24997 * 15 5 3 17 17 C 1.53002 * 117.49880 * 245.24667 * 16 15 5 18 18 C 1.52995 * 117.50179 * 176.58851 * 16 15 5 19 19 C 1.46496 * 119.99614 * 180.02562 * 2 1 3 20 20 H 1.08998 * 110.01209 * 179.29801 * 19 2 1 21 21 C 1.53871 * 110.03105 * 57.91961 * 19 2 1 22 22 C 1.54192 * 108.69243 * 193.57274 * 21 19 2 23 23 S 1.82915 * 105.10961 * 27.83387 * 22 21 19 24 24 O 1.42099 * 109.35770 * 244.51849 * 23 22 21 25 25 O 1.42107 * 109.35412 * 111.31416 * 23 22 21 26 26 C 1.55049 * 110.02641 * 300.67761 * 19 2 1 27 27 H 1.09002 * 109.47049 * 85.61790 * 1 2 3 28 28 H 1.09000 * 109.47033 * 325.62657 * 1 2 3 29 29 H 1.08994 * 109.47248 * 205.62331 * 1 2 3 30 30 H 1.08989 * 109.47249 * 216.12519 * 6 5 3 31 31 H 1.09000 * 109.46880 * 336.12665 * 6 5 3 32 32 H 0.97003 * 119.99667 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.47052 * 205.24456 * 15 5 3 34 34 H 1.08996 * 109.47304 * 325.25034 * 15 5 3 35 35 H 1.09004 * 115.55365 * 30.91083 * 16 15 5 36 36 H 1.09000 * 117.49849 * 359.97438 * 17 16 15 37 37 H 1.09004 * 117.49933 * 145.01244 * 17 16 15 38 38 H 1.09003 * 117.50121 * 214.97822 * 18 16 15 39 39 H 1.09002 * 117.49808 * 359.97438 * 18 16 15 40 40 H 1.08999 * 109.64939 * 313.37972 * 21 19 2 41 41 H 1.09002 * 109.64698 * 73.67410 * 21 19 2 42 42 H 1.08997 * 110.27786 * 268.94307 * 22 21 19 43 43 H 1.09005 * 110.42598 * 146.80331 * 22 21 19 44 44 H 1.09000 * 110.78751 * 279.99143 * 26 19 2 45 45 H 1.08996 * 110.79093 * 43.26592 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1688 0.0854 5 7 1.4684 2.3325 -0.0947 6 6 0.0231 2.3286 -0.3343 7 6 -0.7041 2.4593 0.9791 8 1 -0.1456 2.5370 1.9002 9 6 -2.0825 2.4796 1.0049 10 7 -2.7626 2.3845 -0.1167 11 14 -2.9838 2.6423 2.6329 12 1 -1.9966 2.7313 3.7386 13 1 -3.8201 3.8693 2.6153 14 1 -3.8515 1.4549 2.8391 15 6 2.1849 3.6030 0.0419 16 6 2.7717 4.0058 -1.3125 17 6 4.2960 4.0489 -1.4373 18 6 3.4938 5.3519 -1.3974 19 6 2.1974 -1.2687 -0.0006 20 1 3.2708 -1.0798 -0.0130 21 6 1.7960 -2.1085 -1.2258 22 6 2.3061 -3.5498 -1.0257 23 16 2.3592 -3.7894 0.7869 24 8 3.7059 -3.9829 1.1971 25 8 1.3597 -4.7250 1.1677 26 6 1.8192 -2.1007 1.2519 27 1 -0.3633 0.0785 -1.0247 28 1 -0.3633 0.8482 0.5802 29 1 -0.3633 -0.9265 0.4444 30 1 -0.2403 3.1660 -0.9803 31 1 -0.2627 1.3938 -0.8165 32 1 -3.7323 2.3992 -0.0986 33 1 1.4945 4.3746 0.3826 34 1 2.9902 3.4898 0.7676 35 1 2.2043 3.6831 -2.1855 36 1 4.8808 3.7908 -0.5544 37 1 4.7313 3.7549 -2.3924 38 1 3.4017 5.9148 -2.3262 39 1 3.5505 5.9509 -0.4884 40 1 0.7106 -2.1151 -1.3260 41 1 2.2423 -1.6824 -2.1244 42 1 3.3034 -3.6600 -1.4514 43 1 1.6195 -4.2631 -1.4819 44 1 2.3625 -1.7486 2.1288 45 1 0.7438 -2.0696 1.4268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331704249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -6.065978 kcal Electronic energy + Delta-G solvation = -27890.479353 eV Core-core repulsion = 24039.255397 eV Total energy + Delta-G solvation = -3851.223955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.14645 -37.51930 -37.07957 -36.40883 -36.02449 -35.58065 -33.00107 -32.73600 -29.75553 -28.51665 -26.54220 -25.77869 -24.57231 -22.92033 -22.03864 -21.28631 -20.16458 -19.08021 -18.88714 -17.08081 -16.82964 -16.78535 -16.19942 -15.81608 -15.65860 -15.06995 -14.86048 -14.57707 -14.40992 -14.20562 -13.90419 -13.64647 -13.26123 -12.77722 -12.72602 -12.61452 -12.37605 -12.26267 -12.17215 -12.06286 -11.91209 -11.66527 -11.32672 -11.21627 -11.09391 -11.01128 -10.96233 -10.76137 -10.46222 -10.43818 -10.13495 -9.83596 -9.63402 -9.42422 -8.92176 -8.58346 -8.27037 -7.53472 -6.41224 -4.47539 -0.02840 2.42330 3.08649 3.19253 3.20260 3.25267 3.50272 3.81461 3.94551 4.10678 4.15773 4.37059 4.51274 4.66391 4.68531 4.74127 4.85791 4.96739 5.12843 5.28474 5.36572 5.42654 5.47484 5.61143 5.80326 5.86772 5.87687 5.92098 5.99746 6.12167 6.19272 6.24386 6.31664 6.40988 6.60735 6.77768 6.93203 7.14851 7.26459 7.38326 7.63021 7.74139 7.94139 8.50038 8.72476 9.13976 9.31698 10.60937 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.004906 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.857755 B = 5705.771121 C = 7997.451978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.611 5.611 3 C 0.710 3.290 4 O -0.614 6.614 5 N -0.607 5.607 6 C 0.183 3.817 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.070 3.930 10 N -0.874 5.874 11 Si 0.895 3.105 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.172 3.828 16 C -0.157 4.157 17 C -0.169 4.169 18 C -0.184 4.184 19 C 0.163 3.837 20 H 0.119 0.881 21 C -0.128 4.128 22 C -0.587 4.587 23 S 2.390 3.610 24 O -0.938 6.938 25 O -0.941 6.941 26 C -0.602 4.602 27 H 0.049 0.951 28 H 0.185 0.815 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.269 0.731 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -4.811 -3.411 8.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.347 5.347 3 C 0.413 3.587 4 O -0.496 6.496 5 N -0.340 5.340 6 C 0.064 3.936 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.136 4.136 10 N -0.510 5.510 11 Si 0.722 3.278 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.048 3.952 16 C -0.177 4.177 17 C -0.206 4.206 18 C -0.222 4.222 19 C 0.056 3.944 20 H 0.137 0.863 21 C -0.168 4.168 22 C -0.717 4.717 23 S 2.573 3.427 24 O -0.935 6.935 25 O -0.938 6.938 26 C -0.733 4.733 27 H 0.067 0.933 28 H 0.200 0.800 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.048 -5.581 -2.896 9.445 hybrid contribution -1.063 0.729 0.146 1.297 sum 5.985 -4.852 -2.750 8.180 Atomic orbital electron populations 1.24369 0.77810 1.08483 1.03250 1.46661 1.07241 1.02633 1.78142 1.15868 0.84597 0.80720 0.77510 1.90801 1.12128 1.86504 1.60145 1.47197 1.10230 1.02957 1.73614 1.21073 0.74004 1.01777 0.96749 1.21385 0.91432 1.50864 0.93974 0.91575 1.25039 0.97482 0.94087 0.96983 1.69930 1.07861 1.47068 1.26155 0.86468 0.79816 0.78167 0.83358 1.19425 1.20574 1.20494 1.20678 0.95743 0.85160 0.93645 1.22784 0.94646 0.99725 1.00497 1.22901 0.94476 1.00544 1.02681 1.22922 1.05790 0.90851 1.02630 1.21328 0.99481 0.84405 0.89235 0.86271 1.22314 1.03637 0.90277 1.00547 1.30424 1.11059 1.05278 1.24985 1.08931 0.75601 0.78412 0.79731 1.93619 1.34508 1.85052 1.80322 1.93610 1.60274 1.58830 1.81080 1.31098 1.13413 1.20918 1.07862 0.93251 0.80003 0.94239 0.95407 0.89413 0.92074 0.89949 0.91433 0.88197 0.88767 0.89758 0.89348 0.89022 0.89126 0.88680 0.84481 0.84339 0.84040 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 7.35 59.85 0.44 0.43 16 2 N -0.61 -10.74 2.82 -211.86 -0.60 -11.33 16 3 C 0.71 14.39 8.13 -86.92 -0.71 13.68 16 4 O -0.61 -13.38 15.43 5.29 0.08 -13.30 16 5 N -0.61 -12.21 2.47 -182.29 -0.45 -12.66 16 6 C 0.18 3.96 4.60 -5.19 -0.02 3.94 16 7 C -0.54 -12.51 6.79 -34.44 -0.23 -12.75 16 8 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.66 5.35 -17.82 -0.10 1.56 16 10 N -0.87 -21.45 13.29 55.43 0.74 -20.71 16 11 Si 0.90 18.74 29.54 -169.99 -5.02 13.72 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 15 C 0.17 3.12 5.61 -4.04 -0.02 3.10 16 16 C -0.16 -2.53 5.98 -90.62 -0.54 -3.07 16 17 C -0.17 -2.47 10.18 -26.70 -0.27 -2.74 16 18 C -0.18 -2.44 10.25 -26.70 -0.27 -2.72 16 19 C 0.16 2.29 2.96 -66.40 -0.20 2.10 16 20 H 0.12 1.75 6.95 -51.93 -0.36 1.39 16 21 C -0.13 -1.40 5.87 -25.65 -0.15 -1.55 16 22 C -0.59 -5.06 7.26 37.78 0.27 -4.78 16 23 S 2.39 26.92 6.11 -107.50 -0.66 26.27 16 24 O -0.94 -13.54 18.15 -57.71 -1.05 -14.59 16 25 O -0.94 -13.43 18.15 -57.71 -1.05 -14.47 16 26 C -0.60 -7.33 6.77 38.24 0.26 -7.08 16 27 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 28 H 0.18 3.84 2.25 -77.25 -0.17 3.66 16 29 H 0.04 0.62 6.32 -51.93 -0.33 0.29 16 30 H 0.03 0.65 8.12 -51.94 -0.42 0.23 16 31 H 0.09 1.89 3.17 -91.40 -0.29 1.60 16 32 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 33 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 34 H 0.07 1.24 7.40 -51.93 -0.38 0.86 16 35 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.09 1.43 8.04 -51.93 -0.42 1.02 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 0.96 7.28 -51.93 -0.38 0.58 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.14 1.68 8.14 -51.93 -0.42 1.26 16 45 H 0.14 1.70 6.38 -51.93 -0.33 1.37 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -30.83 366.24 -10.80 -41.63 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.78 Total: 9.81 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.54 Total: -9.88 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.31 Total: -44.71 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -2.01 Total: -42.36 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Atomic # 16 Polarization: 26.92 SS G_CDS: -0.66 Total: 26.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.83 -10.80 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331704249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.565 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds