Wall clock time and date at job start Tue Mar 31 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46964 * 84.99935 * 3 2 1 5 5 H 1.08004 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99968 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00006 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 90.00088 * 8 6 4 10 10 H 1.48501 * 109.47108 * 210.00195 * 8 6 4 11 11 H 1.48502 * 109.46839 * 329.99886 * 8 6 4 12 12 S 1.65597 * 119.99791 * 180.28225 * 2 1 3 13 13 O 1.42101 * 106.40154 * 203.53789 * 12 2 1 14 14 O 1.42106 * 106.40098 * 336.45446 * 12 2 1 15 15 N 1.65596 * 107.22389 * 89.99756 * 12 2 1 16 16 C 1.46498 * 119.99862 * 64.99463 * 15 12 2 17 17 H 1.09001 * 112.83026 * 15.34016 * 16 15 12 18 18 C 1.53851 * 113.58970 * 244.23004 * 16 15 12 19 19 H 1.09000 * 116.27906 * 340.42067 * 18 16 15 20 20 C 1.54418 * 112.96171 * 117.57421 * 18 16 15 21 21 C 1.54435 * 104.15925 * 93.70174 * 20 18 16 22 22 O 1.44436 * 104.82605 * 335.63106 * 21 20 18 23 23 C 1.44266 * 105.56870 * 40.45195 * 22 21 20 24 24 H 1.08996 * 115.49445 * 89.67884 * 23 22 21 25 25 C 1.52830 * 113.68853 * 227.12431 * 23 22 21 26 26 C 1.52967 * 121.08153 * 206.71473 * 25 23 22 27 27 C 1.53939 * 86.81012 * 100.57030 * 26 25 23 28 28 C 1.52984 * 121.04256 * 315.03287 * 25 23 22 29 29 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 30 30 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 31 31 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 32 32 H 1.08990 * 109.47572 * 205.00129 * 3 2 1 33 33 H 1.09003 * 109.47280 * 325.00485 * 3 2 1 34 34 H 0.97000 * 120.00049 * 180.02562 * 7 6 4 35 35 H 0.97000 * 119.99918 * 245.00321 * 15 12 2 36 36 H 1.08999 * 110.49530 * 212.37160 * 20 18 16 37 37 H 1.09005 * 110.49347 * 335.03130 * 20 18 16 38 38 H 1.08996 * 110.37165 * 94.46465 * 21 20 18 39 39 H 1.09008 * 110.37062 * 216.68421 * 21 20 18 40 40 H 1.08999 * 113.65719 * 215.04798 * 26 25 23 41 41 H 1.08998 * 113.65663 * 346.08869 * 26 25 23 42 42 H 1.09004 * 113.58538 * 270.20820 * 27 26 25 43 43 H 1.09003 * 113.58500 * 139.39765 * 27 26 25 44 44 H 1.09003 * 113.66405 * 13.87566 * 28 25 23 45 45 H 1.09005 * 113.65819 * 144.92100 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9289 1.1933 2.2332 6 6 2.9998 2.9507 1.6664 7 7 3.1259 3.3841 2.9017 8 14 3.7128 3.9409 0.2519 9 1 2.6934 4.9001 -0.2441 10 1 4.9072 4.6872 0.7227 11 1 4.1045 3.0223 -0.8472 12 16 2.2930 -1.4341 -0.0071 13 8 3.5760 -1.1595 0.5387 14 8 1.4113 -2.4091 0.5327 15 7 2.5381 -1.8510 -1.5908 16 6 3.3862 -1.0162 -2.4452 17 1 4.0015 -0.3182 -1.8775 18 6 2.6281 -0.3600 -3.6122 19 1 1.6762 -0.8149 -3.8858 20 6 2.6363 1.1827 -3.5442 21 6 3.8466 1.5926 -4.4115 22 8 4.7210 0.4432 -4.3927 23 6 3.8540 -0.7047 -4.5012 24 1 3.6394 -1.0362 -5.5171 25 6 4.1681 -1.8090 -3.4924 26 6 3.8297 -3.2706 -3.7906 27 6 5.3151 -3.4512 -4.1520 28 6 5.6088 -2.2528 -3.2316 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3633 -0.8875 -0.5181 32 1 3.1858 1.1177 -0.4343 33 1 1.6502 2.0043 -0.5894 34 1 3.5887 4.2181 3.0782 35 1 2.1200 -2.6479 -1.9529 36 1 1.7139 1.5879 -3.9603 37 1 2.7722 1.5187 -2.5162 38 1 3.5269 1.8093 -5.4308 39 1 4.3470 2.4593 -3.9793 40 1 3.5216 -3.8364 -2.9114 41 1 3.1548 -3.3994 -4.6368 42 1 5.5350 -3.2587 -5.2021 43 1 5.7398 -4.3895 -3.7951 44 1 6.3567 -1.5676 -3.6308 45 1 5.7993 -2.5332 -2.1956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338327701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:25 Heat of formation + Delta-G solvation = -62.056175 kcal Electronic energy + Delta-G solvation = -28978.743776 eV Core-core repulsion = 25125.091904 eV Total energy + Delta-G solvation = -3853.651872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.56689 -37.80398 -36.68656 -35.68820 -35.21554 -34.93516 -32.40462 -31.98454 -30.50242 -28.43357 -25.91586 -25.20359 -24.93221 -23.95408 -22.24008 -21.89590 -20.47733 -19.02886 -18.44207 -17.36108 -17.25835 -16.91900 -16.51255 -16.04586 -15.54482 -15.28562 -15.10910 -14.56978 -14.46397 -14.16745 -13.67608 -13.36111 -13.05854 -12.77265 -12.56426 -12.46787 -12.43341 -12.27528 -11.99280 -11.85517 -11.65026 -11.52329 -11.38829 -11.35149 -11.31217 -11.26647 -11.05461 -10.64350 -10.60987 -10.52267 -10.37245 -10.23929 -10.08251 -9.63840 -9.56996 -9.14120 -8.61758 -8.14002 -6.10004 -4.09328 1.12240 3.21822 3.28297 3.30404 3.39554 3.49182 4.03047 4.11709 4.31615 4.35256 4.44713 4.60550 4.65240 4.73766 4.92086 4.93575 5.11583 5.12272 5.16037 5.19981 5.27689 5.36579 5.43833 5.49778 5.56210 5.68295 5.68783 5.73243 5.75808 5.90352 5.96465 6.03262 6.08335 6.13655 6.24814 6.29507 6.35606 6.39047 6.62269 6.77358 7.00051 7.07314 7.39356 7.55610 8.47210 8.95491 9.48618 11.03719 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.006032 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.256623 B = 4640.911189 C = 5823.344241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.991 5.991 3 C 0.229 3.771 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.869 3.131 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.262 1.262 12 S 2.779 3.221 13 O -0.960 6.960 14 O -0.994 6.994 15 N -1.119 6.119 16 C 0.158 3.842 17 H 0.123 0.877 18 C -0.148 4.148 19 H 0.114 0.886 20 C -0.158 4.158 21 C 0.047 3.953 22 O -0.354 6.354 23 C 0.076 3.924 24 H 0.094 0.906 25 C -0.106 4.106 26 C -0.110 4.110 27 C -0.139 4.139 28 C -0.123 4.123 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -9.262 -19.417 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.833 5.833 3 C 0.106 3.894 4 C -0.570 4.570 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.696 3.304 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.187 1.187 12 S 2.787 3.213 13 O -0.943 6.943 14 O -0.978 6.978 15 N -0.876 5.876 16 C 0.050 3.950 17 H 0.141 0.859 18 C -0.169 4.169 19 H 0.132 0.868 20 C -0.196 4.196 21 C -0.029 4.029 22 O -0.273 6.273 23 C 0.018 3.982 24 H 0.112 0.888 25 C -0.108 4.108 26 C -0.147 4.147 27 C -0.176 4.176 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.684 -9.420 -18.402 20.685 hybrid contribution -0.223 0.717 -1.055 1.295 sum -0.907 -8.704 -19.457 21.335 Atomic orbital electron populations 1.21217 0.79519 1.01116 1.01840 1.57396 1.14445 1.22553 1.88872 1.19477 0.90660 0.80706 0.98569 1.21368 1.36764 1.07003 0.91882 0.90421 1.24872 0.95356 0.97218 0.95501 1.69892 1.42538 1.21914 1.18862 0.86963 0.79411 0.80760 0.83274 1.20033 1.20796 1.18709 1.02070 0.73715 0.72632 0.72887 1.93642 1.40461 1.84589 1.75585 1.93556 1.67127 1.60400 1.76724 1.56210 1.62295 1.36800 1.32251 1.22084 0.90867 0.92277 0.89816 0.85941 1.24591 0.98893 0.95773 0.97642 0.86788 1.23051 0.99070 0.94781 1.02710 1.23525 0.90620 0.89812 0.98962 1.89027 1.29432 1.14070 1.94795 1.23571 0.90047 0.87849 0.96779 0.88814 1.22890 0.97994 0.94033 0.95910 1.22548 0.97306 0.93235 1.01649 1.22826 0.96008 0.98836 0.99928 1.22679 0.95531 0.97343 1.00450 0.92776 0.91533 0.92793 0.95128 0.95440 0.92508 0.75800 0.90233 0.89283 0.92276 0.88758 0.89127 0.91135 0.90278 0.91358 0.90569 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 10.33 59.85 0.62 2.40 16 2 N -0.99 -19.42 3.23 -123.05 -0.40 -19.82 16 3 C 0.23 5.19 3.20 -5.19 -0.02 5.17 16 4 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 5 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -27.39 13.96 55.43 0.77 -26.61 16 8 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 12 S 2.78 53.38 6.02 -107.50 -0.65 52.73 16 13 O -0.96 -22.60 16.62 -57.17 -0.95 -23.55 16 14 O -0.99 -20.40 17.21 -57.17 -0.98 -21.38 16 15 N -1.12 -15.50 5.61 -4.57 -0.03 -15.52 16 16 C 0.16 2.17 3.63 -67.56 -0.24 1.93 16 17 H 0.12 2.07 6.76 -51.93 -0.35 1.72 16 18 C -0.15 -1.67 4.89 -88.21 -0.43 -2.11 16 19 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 20 C -0.16 -1.91 6.64 -25.23 -0.17 -2.08 16 21 C 0.05 0.55 7.64 37.91 0.29 0.84 16 22 O -0.35 -4.72 11.09 -35.23 -0.39 -5.11 16 23 C 0.08 0.84 5.18 -25.60 -0.13 0.71 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.11 -1.21 0.97 -154.70 -0.15 -1.36 16 26 C -0.11 -0.99 7.11 -26.26 -0.19 -1.18 16 27 C -0.14 -1.26 8.08 -25.76 -0.21 -1.46 16 28 C -0.12 -1.44 7.75 -26.25 -0.20 -1.64 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 31 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 32 H 0.03 0.71 5.33 -51.93 -0.28 0.43 16 33 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.41 4.48 7.51 -34.47 -0.26 4.22 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.32 6.01 -51.93 -0.31 1.01 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.09 0.81 7.21 -51.93 -0.37 0.44 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -34.86 364.40 -10.07 -44.94 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.00 Total: 4.98 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.27 Total: -12.09 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.35 Total: -61.96 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.33 Total: -50.04 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 16 Polarization: 53.38 SS G_CDS: -0.65 Total: 52.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.86 -10.07 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338327701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.120 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds