Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99913 * 2 1 4 4 C 1.50701 * 109.47403 * 274.99932 * 3 2 1 5 5 H 1.07999 * 119.99958 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99999 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99790 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00206 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47435 * 89.99248 * 8 6 4 10 10 H 1.48497 * 109.47200 * 209.99790 * 8 6 4 11 11 H 1.48507 * 109.46980 * 329.99605 * 8 6 4 12 12 S 1.65595 * 119.99754 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40376 * 156.45848 * 12 2 1 14 14 O 1.42098 * 106.40523 * 23.53976 * 12 2 1 15 15 N 1.65598 * 107.21936 * 269.99981 * 12 2 1 16 16 C 1.46497 * 120.00345 * 64.99632 * 15 12 2 17 17 H 1.09006 * 113.50249 * 36.05413 * 16 15 12 18 18 C 1.50986 * 114.53340 * 261.94267 * 16 15 12 19 19 H 1.08998 * 115.08512 * 170.86830 * 18 16 15 20 20 C 1.52816 * 125.68764 * 17.28048 * 18 16 15 21 21 C 1.56103 * 100.08492 * 233.24431 * 20 18 16 22 22 O 1.45478 * 105.74109 * 23.23991 * 21 20 18 23 23 C 1.38619 * 107.04495 * 12.00783 * 22 21 20 24 24 H 1.08995 * 108.90604 * 74.33380 * 23 22 21 25 25 C 1.47451 * 138.31761 * 228.68059 * 23 22 21 26 26 C 1.52711 * 125.48451 * 259.85694 * 25 23 22 27 27 C 1.53991 * 86.71026 * 108.91321 * 26 25 23 28 28 C 1.52735 * 125.43898 * 17.34753 * 25 23 22 29 29 H 1.09000 * 109.47364 * 270.00064 * 1 2 3 30 30 H 1.09002 * 109.46931 * 29.99600 * 1 2 3 31 31 H 1.08998 * 109.47342 * 149.99606 * 1 2 3 32 32 H 1.09000 * 109.47438 * 35.00251 * 3 2 1 33 33 H 1.09004 * 109.46933 * 155.00278 * 3 2 1 34 34 H 0.97008 * 119.99537 * 180.02562 * 7 6 4 35 35 H 0.97003 * 120.00231 * 245.00389 * 15 12 2 36 36 H 1.09006 * 111.28644 * 115.53653 * 20 18 16 37 37 H 1.08997 * 111.28386 * 350.96528 * 20 18 16 38 38 H 1.08994 * 110.19786 * 264.17052 * 21 20 18 39 39 H 1.09001 * 110.25933 * 142.33772 * 21 20 18 40 40 H 1.08995 * 113.67773 * 223.36590 * 26 25 23 41 41 H 1.09008 * 113.67199 * 354.46116 * 26 25 23 42 42 H 1.09008 * 113.56744 * 269.96548 * 27 26 25 43 43 H 1.09002 * 113.57103 * 139.20461 * 27 26 25 44 44 H 1.08992 * 113.67241 * 5.51121 * 28 25 23 45 45 H 1.08999 * 113.67040 * 136.60255 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.1258 3.3843 -2.9015 8 14 3.7138 3.9403 -0.2518 9 1 5.1111 3.5055 0.0008 10 1 3.6999 5.3836 -0.6007 11 1 2.8980 3.7182 0.9691 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5455 15 7 2.5380 -1.8594 1.5809 16 6 1.3946 -2.1788 2.4392 17 1 0.5923 -2.7011 1.9180 18 6 0.9342 -1.0416 3.3192 19 1 -0.0051 -1.2146 3.8443 20 6 1.2839 0.4334 3.1255 21 6 1.8476 0.7690 4.5420 22 8 2.2805 -0.5005 5.1055 23 6 2.2745 -1.4261 4.0736 24 1 3.1290 -1.2365 3.4241 25 6 1.7726 -2.7891 3.8199 26 6 2.6081 -4.0662 3.8756 27 6 1.8399 -4.4069 5.1659 28 6 0.7049 -3.5073 4.6429 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6502 2.0043 0.5895 33 1 3.1858 1.1176 0.4343 34 1 3.5893 4.2180 -3.0780 35 1 3.4387 -1.8969 1.9391 36 1 0.3956 1.0247 2.9028 37 1 2.0450 0.5618 2.3560 38 1 1.0675 1.2097 5.1627 39 1 2.6931 1.4520 4.4597 40 1 2.4107 -4.7546 3.0539 41 1 3.6716 -3.8868 4.0338 42 1 2.3159 -4.0268 6.0699 43 1 1.5624 -5.4582 5.2432 44 1 0.2518 -2.8824 5.4124 45 1 -0.0306 -4.0376 4.0381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338327705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = 8.221998 kcal Electronic energy + Delta-G solvation = -29007.342684 eV Core-core repulsion = 25156.738302 eV Total energy + Delta-G solvation = -3850.604382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55570 -38.18340 -36.73950 -35.81263 -35.49999 -35.29189 -32.42619 -31.85739 -30.50745 -28.44235 -26.19375 -25.23016 -25.08955 -24.05043 -22.23863 -21.96158 -20.42742 -19.08500 -18.51645 -17.56766 -17.14989 -16.80981 -16.43714 -16.27069 -16.03461 -15.42750 -15.27293 -14.76168 -14.33402 -14.28293 -13.83087 -13.42828 -13.15857 -12.72844 -12.62924 -12.57265 -12.45560 -12.18465 -11.85253 -11.80663 -11.72377 -11.52811 -11.46661 -11.41423 -11.28578 -11.25348 -11.19718 -10.75925 -10.66141 -10.60309 -10.45892 -10.26689 -9.78925 -9.59200 -9.36031 -9.05490 -8.63393 -8.16786 -6.11905 -4.11471 1.04573 2.83654 3.21953 3.26356 3.27975 3.33331 3.81470 3.97354 4.14024 4.22708 4.33983 4.40306 4.56728 4.65511 4.88333 4.97802 5.01946 5.15087 5.16257 5.19224 5.27904 5.34138 5.36176 5.47435 5.52893 5.53196 5.67198 5.69316 5.72136 5.78170 5.88564 5.89786 6.00514 6.04514 6.16874 6.18178 6.29767 6.41300 6.63389 6.88152 6.95955 7.04976 7.35170 7.53922 8.44975 8.93433 9.46878 11.01679 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.004982 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.840458 B = 5618.545486 C = 6506.083028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.985 5.985 3 C 0.230 3.770 4 C -0.532 4.532 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.871 3.129 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.782 3.218 13 O -0.960 6.960 14 O -0.990 6.990 15 N -1.114 6.114 16 C 0.154 3.846 17 H 0.113 0.887 18 C -0.196 4.196 19 H 0.122 0.878 20 C -0.144 4.144 21 C 0.054 3.946 22 O -0.364 6.364 23 C 0.058 3.942 24 H 0.084 0.916 25 C -0.067 4.067 26 C -0.130 4.130 27 C -0.137 4.137 28 C -0.111 4.111 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -11.357 17.933 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.828 5.828 3 C 0.106 3.894 4 C -0.571 4.571 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.697 3.303 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.189 1.189 12 S 2.789 3.211 13 O -0.943 6.943 14 O -0.974 6.974 15 N -0.872 5.872 16 C 0.045 3.955 17 H 0.131 0.869 18 C -0.217 4.217 19 H 0.140 0.860 20 C -0.181 4.181 21 C -0.021 4.021 22 O -0.282 6.282 23 C -0.001 4.001 24 H 0.102 0.898 25 C -0.069 4.069 26 C -0.168 4.168 27 C -0.175 4.175 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.250 0.750 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.550 -11.695 17.151 21.488 hybrid contribution 0.714 1.136 0.908 1.621 sum -4.836 -10.559 18.059 21.470 Atomic orbital electron populations 1.21428 0.79588 1.03884 1.00417 1.57309 1.14514 1.22289 1.88647 1.19422 0.90608 0.80738 0.98612 1.21373 1.36894 1.07007 0.91866 0.90389 1.24867 0.95365 0.97202 0.95472 1.69896 1.42455 1.21997 1.18852 0.86950 0.80410 0.79842 0.83069 1.19842 1.20948 1.18937 1.02027 0.73448 0.73034 0.72579 1.93666 1.40664 1.84822 1.75168 1.93533 1.67466 1.59849 1.76516 1.56303 1.13562 1.85354 1.31958 1.21171 0.88585 0.95599 0.90098 0.86920 1.24884 0.99808 0.94589 1.02381 0.86031 1.22763 1.02739 0.95573 0.97054 1.24169 0.98877 0.85364 0.93697 1.87706 1.88104 1.18599 1.33839 1.22838 0.96898 0.92445 0.87919 0.89831 1.22394 0.98675 0.91465 0.94320 1.22792 0.99367 0.96184 0.98430 1.22833 0.97182 0.99684 0.97770 1.22651 0.95919 0.97626 0.98641 0.93913 0.90183 0.91360 0.94783 0.95590 0.92500 0.75050 0.89788 0.89308 0.90228 0.91146 0.88895 0.91004 0.90094 0.91202 0.90557 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.68 59.85 0.64 2.08 16 2 N -0.99 -18.47 2.39 -123.05 -0.29 -18.76 16 3 C 0.23 5.07 2.57 -5.20 -0.01 5.06 16 4 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 5 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 8 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 12 S 2.78 51.30 6.10 -107.50 -0.66 50.65 16 13 O -0.96 -21.89 17.11 -57.17 -0.98 -22.86 16 14 O -0.99 -19.54 16.28 -57.17 -0.93 -20.47 16 15 N -1.11 -14.93 4.70 -15.03 -0.07 -15.00 16 16 C 0.15 1.74 4.53 -79.26 -0.36 1.38 16 17 H 0.11 1.23 7.86 -51.93 -0.41 0.82 16 18 C -0.20 -2.12 4.22 -100.57 -0.42 -2.54 16 19 H 0.12 1.14 7.33 -51.93 -0.38 0.76 16 20 C -0.14 -1.72 5.72 -25.16 -0.14 -1.86 16 21 C 0.05 0.62 7.87 38.82 0.31 0.93 16 22 O -0.36 -4.69 11.31 -28.64 -0.32 -5.01 16 23 C 0.06 0.67 4.90 -38.05 -0.19 0.49 16 24 H 0.08 1.03 5.27 -51.93 -0.27 0.75 16 25 C -0.07 -0.65 1.05 -168.00 -0.18 -0.82 16 26 C -0.13 -1.14 7.90 -26.36 -0.21 -1.35 16 27 C -0.14 -1.06 8.08 -25.72 -0.21 -1.27 16 28 C -0.11 -0.88 6.95 -26.36 -0.18 -1.06 16 29 H 0.04 0.52 6.76 -51.93 -0.35 0.17 16 30 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 32 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 33 H 0.03 0.58 6.99 -51.93 -0.36 0.22 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.41 4.96 7.23 -34.47 -0.25 4.71 16 36 H 0.08 0.94 7.80 -51.93 -0.41 0.53 16 37 H 0.09 1.24 5.16 -51.93 -0.27 0.98 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -34.31 357.98 -9.97 -44.28 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.82 Total: 4.27 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.40 Total: -12.04 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.41 Total: -60.12 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -2.23 Total: -48.35 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -0.66 Total: 50.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.31 -9.97 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338327705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.507 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds