Wall clock time and date at job start Tue Mar 31 2020 04:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47583 * 2 1 4 4 C 1.50699 * 109.47146 * 240.00313 * 2 1 3 5 5 O 1.21277 * 120.00316 * 257.15191 * 4 2 1 6 6 N 1.34782 * 120.00239 * 77.15158 * 4 2 1 7 7 C 1.46499 * 119.99530 * 355.21394 * 6 4 2 8 8 C 1.46492 * 120.00441 * 175.21576 * 6 4 2 9 9 C 1.50704 * 109.47170 * 89.99529 * 8 6 4 10 10 H 1.08000 * 120.00069 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99868 * 179.97438 * 9 8 6 12 12 N 1.31511 * 120.00337 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99793 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46772 * 90.00243 * 13 11 9 15 15 H 1.48495 * 109.47112 * 210.00514 * 13 11 9 16 16 H 1.48501 * 109.47093 * 330.00371 * 13 11 9 17 17 N 1.46895 * 109.46948 * 120.00316 * 2 1 3 18 18 C 1.48650 * 111.00353 * 301.73855 * 17 2 1 19 19 C 1.54727 * 104.66926 * 200.18453 * 18 17 2 20 20 H 1.09002 * 110.36486 * 263.27639 * 19 18 17 21 21 C 1.53074 * 108.55699 * 142.21927 * 19 18 17 22 22 C 1.54934 * 109.09751 * 216.28898 * 21 19 18 23 23 S 1.83827 * 101.21205 * 41.66666 * 22 21 19 24 24 O 1.42095 * 109.61514 * 76.66053 * 23 22 21 25 25 O 1.42105 * 109.61063 * 210.43037 * 23 22 21 26 26 C 1.55035 * 104.64721 * 22.80919 * 19 18 17 27 27 H 1.09002 * 112.06992 * 241.16803 * 26 19 18 28 28 C 1.48864 * 111.00080 * 187.18706 * 17 2 1 29 29 H 1.09002 * 109.47263 * 66.54101 * 1 2 3 30 30 H 1.08999 * 109.47525 * 186.54183 * 1 2 3 31 31 H 1.09003 * 109.46696 * 306.54370 * 1 2 3 32 32 H 1.09003 * 109.47335 * 91.64754 * 7 6 4 33 33 H 1.09008 * 109.47045 * 211.64520 * 7 6 4 34 34 H 1.08997 * 109.47787 * 331.64697 * 7 6 4 35 35 H 1.08996 * 109.47503 * 209.99774 * 8 6 4 36 36 H 1.09007 * 109.46963 * 330.00362 * 8 6 4 37 37 H 0.96997 * 120.00382 * 180.02562 * 12 11 9 38 38 H 1.08998 * 110.39836 * 318.98616 * 18 17 2 39 39 H 1.09004 * 110.39576 * 81.38711 * 18 17 2 40 40 H 1.09000 * 109.54717 * 336.21515 * 21 19 18 41 41 H 1.09010 * 109.55014 * 96.40140 * 21 19 18 42 42 H 1.09002 * 111.07677 * 159.64321 * 22 21 19 43 43 H 1.09001 * 111.07970 * 283.63863 * 22 21 19 44 44 H 1.09004 * 110.55756 * 280.22124 * 28 17 2 45 45 H 1.09011 * 110.55252 * 42.90278 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.4546 -1.8441 -1.1463 6 7 2.0123 -0.0857 -2.4247 7 6 1.4065 1.2426 -2.5463 8 6 2.5961 -0.7350 -3.6009 9 6 1.5415 -1.5567 -4.2964 10 1 0.5367 -1.5914 -3.9019 11 6 1.8591 -2.2633 -5.4370 12 7 3.0825 -2.2207 -5.9176 13 14 0.5516 -3.2813 -6.2995 14 1 -0.1409 -2.4431 -7.3109 15 1 1.1907 -4.4411 -6.9714 16 1 -0.4342 -3.7689 -5.3017 17 7 2.0196 -0.6925 1.1994 18 6 1.5089 -0.0433 2.4353 19 6 2.4753 -0.5088 3.5504 20 1 2.0576 -1.3640 4.0817 21 6 2.7039 0.6575 4.5151 22 6 4.1731 0.6289 5.0060 23 16 5.0625 0.2257 3.4485 24 8 5.1374 1.3837 2.6285 25 8 6.2396 -0.5118 3.7487 26 6 3.7768 -0.8988 2.8036 27 1 4.0298 -1.9499 2.9433 28 6 3.4974 -0.5637 1.3239 29 1 -0.3634 0.4091 -0.9427 30 1 -0.3634 -1.0209 0.1171 31 1 -0.3633 0.6119 0.8257 32 1 2.1700 2.0055 -2.3940 33 1 0.9739 1.3550 -3.5405 34 1 0.6250 1.3559 -1.7951 35 1 2.9745 0.0245 -4.2849 36 1 3.4148 -1.3836 -3.2890 37 1 3.3058 -2.7175 -6.7202 38 1 1.5391 1.0416 2.3348 39 1 0.4936 -0.3779 2.6484 40 1 2.5089 1.5991 4.0016 41 1 2.0326 0.5618 5.3686 42 1 4.4771 1.6027 5.3900 43 1 4.3210 -0.1489 5.7552 44 1 4.0002 -1.2751 0.6688 45 1 3.8134 0.4544 1.0959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352990539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:06 Heat of formation + Delta-G solvation = -77.197547 kcal Electronic energy + Delta-G solvation = -27648.678389 eV Core-core repulsion = 23794.369938 eV Total energy + Delta-G solvation = -3854.308452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.21659 -38.60359 -37.24571 -36.28323 -35.27200 -34.73725 -32.81863 -32.09444 -29.32362 -28.75366 -27.59474 -25.99461 -24.59384 -23.66181 -22.72515 -21.00017 -20.78958 -18.99854 -18.36728 -17.53190 -16.83470 -16.62188 -16.48336 -16.18552 -15.73120 -15.28246 -14.77195 -14.55004 -14.42336 -14.11709 -14.01125 -13.73225 -13.56118 -12.90653 -12.72100 -12.62466 -12.40055 -12.28117 -12.23812 -12.05114 -12.04289 -11.95886 -11.83011 -11.53282 -11.34820 -11.25794 -11.22169 -11.04336 -10.86204 -10.83659 -10.54970 -10.41797 -10.12878 -9.59868 -8.89331 -8.44198 -8.41585 -7.61255 -6.01965 -4.06446 -0.25765 2.20082 3.20810 3.31324 3.37548 3.39610 3.42794 3.49334 3.67339 3.88764 4.06478 4.14338 4.22537 4.31423 4.46647 4.49850 4.74655 4.90586 4.98184 4.99989 5.16232 5.17568 5.21559 5.29508 5.32504 5.35039 5.40921 5.52679 5.64700 5.66396 5.74059 5.79300 5.85527 5.92967 6.13812 6.32102 6.61897 6.77022 7.11029 7.44676 7.56500 7.94411 8.25605 8.43468 8.93005 9.12936 9.58470 11.06137 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.003078 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.212660 B = 9093.968188 C = 9563.641497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 H 0.064 0.936 4 C 0.508 3.492 5 O -0.519 6.519 6 N -0.603 5.603 7 C 0.074 3.926 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.470 5.470 18 C 0.030 3.970 19 C -0.079 4.079 20 H 0.108 0.892 21 C -0.122 4.122 22 C -0.580 4.580 23 S 2.381 3.619 24 O -0.926 6.926 25 O -0.937 6.937 26 C -0.547 4.547 27 H 0.157 0.843 28 C 0.042 3.958 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.109 0.891 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 9.972 23.346 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 H 0.081 0.919 4 C 0.293 3.707 5 O -0.394 6.394 6 N -0.336 5.336 7 C -0.070 4.070 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.195 5.195 18 C -0.098 4.098 19 C -0.099 4.099 20 H 0.126 0.874 21 C -0.161 4.161 22 C -0.710 4.710 23 S 2.564 3.436 24 O -0.923 6.923 25 O -0.933 6.933 26 C -0.657 4.657 27 H 0.175 0.825 28 C -0.087 4.087 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.127 0.873 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.235 9.024 22.761 24.586 hybrid contribution -1.236 0.050 -0.242 1.261 sum -3.471 9.074 22.519 24.525 Atomic orbital electron populations 1.21887 0.92088 1.03686 1.02537 1.21918 0.97516 0.96156 0.90767 0.91870 1.19986 0.80033 0.86817 0.83881 1.90673 1.46135 1.17243 1.85382 1.48142 1.57974 1.17670 1.09845 1.21833 0.97343 0.84710 1.03109 1.19275 0.94384 0.92849 0.80687 1.21420 0.96679 1.28758 1.09387 0.92473 1.24941 0.95568 0.96533 0.97138 1.69928 1.18300 1.42461 1.22771 0.86497 0.81588 0.79855 0.79472 1.20697 1.21107 1.19889 1.65635 1.04410 1.49345 1.00095 1.23494 0.99471 0.97371 0.89477 1.22151 0.93555 0.98819 0.95340 0.87415 1.22234 0.94189 0.99298 1.00381 1.30561 1.08676 1.12041 1.19722 1.09428 0.77494 0.77486 0.79221 1.93630 1.86526 1.46775 1.65353 1.93611 1.43468 1.72346 1.83921 1.31026 1.13145 1.16200 1.05316 0.82480 1.23099 0.91259 1.02520 0.91784 0.90661 0.90807 0.92051 0.93825 0.90700 0.91882 0.95001 0.94014 0.92738 0.92787 0.88885 0.89260 0.88251 0.84603 0.84419 0.87292 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.45 37.16 0.31 -1.48 16 2 C 0.05 0.73 1.45 -68.87 -0.10 0.63 16 3 H 0.06 0.84 7.37 -51.93 -0.38 0.46 16 4 C 0.51 10.59 6.44 -10.98 -0.07 10.52 16 5 O -0.52 -13.13 15.12 5.56 0.08 -13.05 16 6 N -0.60 -12.85 2.86 -182.95 -0.52 -13.37 16 7 C 0.07 1.17 9.85 59.85 0.59 1.76 16 8 C 0.25 6.53 5.13 -5.20 -0.03 6.50 16 9 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 13 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 N -0.47 -6.55 4.86 -222.90 -1.08 -7.63 16 18 C 0.03 0.28 4.78 -1.95 -0.01 0.27 16 19 C -0.08 -0.56 3.59 -88.60 -0.32 -0.88 16 20 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 21 C -0.12 -0.60 5.86 -25.67 -0.15 -0.75 16 22 C -0.58 -2.94 7.46 38.18 0.28 -2.65 16 23 S 2.38 22.95 5.77 -107.50 -0.62 22.33 16 24 O -0.93 -11.94 16.50 -57.69 -0.95 -12.89 16 25 O -0.94 -12.34 18.16 -57.69 -1.05 -13.39 16 26 C -0.55 -5.30 4.24 -24.99 -0.11 -5.40 16 27 H 0.16 1.37 8.14 -51.93 -0.42 0.95 16 28 C 0.04 0.58 5.31 -2.07 -0.01 0.57 16 29 H 0.07 0.93 5.80 -51.93 -0.30 0.63 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.56 7.25 -51.93 -0.38 0.18 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.22 8.09 -51.92 -0.42 0.80 16 34 H 0.06 0.81 4.42 -51.93 -0.23 0.58 16 35 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.04 1.24 7.49 -51.93 -0.39 0.85 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.05 0.43 7.09 -51.93 -0.37 0.06 16 39 H 0.09 0.74 7.76 -51.93 -0.40 0.33 16 40 H 0.09 0.42 7.19 -51.93 -0.37 0.05 16 41 H 0.10 0.29 8.14 -51.92 -0.42 -0.13 16 42 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.11 1.80 7.28 -51.93 -0.38 1.42 16 45 H 0.07 0.96 6.28 -51.92 -0.33 0.63 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -38.84 362.04 -9.87 -48.71 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.87 Total: -2.48 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.02 Total: -4.58 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.87 Total: -47.15 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -1.92 Total: -39.33 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 22.95 SS G_CDS: -0.62 Total: 22.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.84 -9.87 -48.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352990539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.487 kcal (2) G-P(sol) polarization free energy of solvation -38.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds