Wall clock time and date at job start Tue Mar 31 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47156 * 2 1 4 4 C 1.50703 * 109.47035 * 239.99842 * 2 1 3 5 5 O 1.21276 * 120.00085 * 247.16155 * 4 2 1 6 6 N 1.34771 * 120.00099 * 67.16271 * 4 2 1 7 7 C 1.46505 * 119.99808 * 4.25408 * 6 4 2 8 8 C 1.46497 * 120.00275 * 184.25717 * 6 4 2 9 9 C 1.50703 * 109.47111 * 89.99858 * 8 6 4 10 10 H 1.07995 * 120.00347 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99499 * 179.97438 * 9 8 6 12 12 N 1.31510 * 120.00285 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99575 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47207 * 90.00303 * 13 11 9 15 15 H 1.48505 * 109.47403 * 209.99984 * 13 11 9 16 16 H 1.48500 * 109.47341 * 330.00095 * 13 11 9 17 17 N 1.46901 * 109.46884 * 120.00379 * 2 1 3 18 18 C 1.49614 * 110.99932 * 294.99549 * 17 2 1 19 19 C 1.51940 * 104.89492 * 246.40219 * 18 17 2 20 20 H 1.09004 * 110.34462 * 81.96014 * 19 18 17 21 21 C 1.51662 * 122.18959 * 214.14818 * 19 18 17 22 22 C 1.56365 * 105.96574 * 164.45376 * 21 19 18 23 23 S 1.84406 * 104.49597 * 329.34680 * 22 21 19 24 24 O 1.42104 * 109.58024 * 111.94901 * 23 22 21 25 25 O 1.42098 * 109.58322 * 245.80687 * 23 22 21 26 26 C 1.57577 * 99.33848 * 325.96385 * 19 18 17 27 27 H 1.09001 * 108.45809 * 294.88188 * 26 19 18 28 28 C 1.48688 * 100.79185 * 48.46895 * 26 19 18 29 29 H 1.08997 * 109.47303 * 68.71639 * 1 2 3 30 30 H 1.08995 * 109.47351 * 188.71582 * 1 2 3 31 31 H 1.09006 * 109.47136 * 308.71630 * 1 2 3 32 32 H 1.09003 * 109.46963 * 86.67126 * 7 6 4 33 33 H 1.09003 * 109.47304 * 206.67006 * 7 6 4 34 34 H 1.09001 * 109.47255 * 326.67006 * 7 6 4 35 35 H 1.09003 * 109.47046 * 209.99976 * 8 6 4 36 36 H 1.08998 * 109.47069 * 329.99691 * 8 6 4 37 37 H 0.97009 * 119.99513 * 180.02562 * 12 11 9 38 38 H 1.08994 * 110.35788 * 127.54372 * 18 17 2 39 39 H 1.09004 * 110.35335 * 5.25906 * 18 17 2 40 40 H 1.08994 * 110.15206 * 45.32296 * 21 19 18 41 41 H 1.09002 * 110.15004 * 283.57575 * 21 19 18 42 42 H 1.08995 * 110.45609 * 88.14033 * 22 21 19 43 43 H 1.09000 * 110.44859 * 210.56415 * 22 21 19 44 44 H 1.09000 * 111.20593 * 197.61734 * 28 26 19 45 45 H 1.08999 * 110.05799 * 74.36760 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6188 -1.7666 -1.1239 6 7 1.8298 -0.1721 -2.4493 7 6 1.2048 1.1472 -2.5727 8 6 2.2346 -0.9061 -3.6508 9 6 1.0925 -1.7700 -4.1203 10 1 0.1585 -1.7718 -3.5783 11 6 1.2399 -2.5573 -5.2426 12 7 2.3772 -2.5548 -5.9029 13 14 -0.1755 -3.6286 -5.8242 14 1 -1.0178 -2.8617 -6.7770 15 1 0.3630 -4.8360 -6.5007 16 1 -0.9970 -4.0399 -4.6575 17 7 2.0196 -0.6926 1.1994 18 6 1.6418 0.0526 2.4406 19 6 2.9598 0.5335 3.0238 20 1 3.2841 1.4469 2.5250 21 6 3.1913 0.6385 4.5189 22 6 4.7383 0.7676 4.7067 23 16 5.4550 -0.1747 3.2928 24 8 6.0987 0.7235 2.3994 25 8 6.1482 -1.3144 3.7826 26 6 3.8799 -0.6765 2.6084 27 1 3.5399 -1.5663 3.1382 28 6 3.5182 -0.8215 1.1735 29 1 -0.3634 0.3730 -0.9575 30 1 -0.3634 -1.0157 0.1557 31 1 -0.3634 0.6428 0.8019 32 1 1.9704 1.9199 -2.5023 33 1 0.7008 1.2218 -3.5363 34 1 0.4783 1.2814 -1.7713 35 1 2.5019 -0.1988 -4.4359 36 1 3.0947 -1.5347 -3.4200 37 1 2.4807 -3.1085 -6.6927 38 1 1.1364 -0.6109 3.1422 39 1 1.0041 0.9015 2.1938 40 1 2.8258 -0.2581 5.0194 41 1 2.6900 1.5214 4.9154 42 1 5.0417 1.8134 4.6602 43 1 5.0452 0.3246 5.6541 44 1 3.8190 -1.7955 0.7876 45 1 3.9686 -0.0175 0.5914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352990541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:09 Heat of formation + Delta-G solvation = -63.564962 kcal Electronic energy + Delta-G solvation = -27620.197947 eV Core-core repulsion = 23766.480649 eV Total energy + Delta-G solvation = -3853.717298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47090 -38.72912 -37.26878 -36.23972 -35.28111 -34.81160 -32.87285 -32.07956 -29.35305 -28.53760 -27.54158 -26.05289 -24.67845 -23.59712 -22.73946 -21.60389 -20.57863 -19.00238 -18.57728 -17.46782 -16.79711 -16.54018 -16.39591 -16.01118 -15.52814 -15.32731 -14.82451 -14.64359 -14.58217 -14.20340 -14.01417 -13.66611 -13.49552 -13.02122 -12.81691 -12.57056 -12.33345 -12.31838 -12.26677 -12.07348 -11.99704 -11.91905 -11.77242 -11.54053 -11.40646 -11.22725 -11.13561 -11.04445 -10.98195 -10.83276 -10.54784 -10.40532 -10.13836 -9.61169 -8.86722 -8.43054 -8.33933 -7.62514 -6.03503 -4.08474 -0.26230 2.31323 3.02085 3.30260 3.35450 3.38162 3.43823 3.51667 3.65315 3.75563 3.95549 4.08168 4.23437 4.39958 4.45147 4.54782 4.73073 4.90416 4.96235 5.07623 5.14346 5.16064 5.19547 5.26164 5.31143 5.33985 5.43760 5.52809 5.65027 5.69933 5.76824 5.86103 5.89244 6.10001 6.13442 6.38090 6.68245 6.80971 7.10429 7.45783 7.54744 7.92944 8.23849 8.41270 8.90729 9.09803 9.56684 11.04499 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.003082 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.982601 B = 9082.172234 C = 9603.700051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 H 0.060 0.940 4 C 0.509 3.491 5 O -0.525 6.525 6 N -0.601 5.601 7 C 0.070 3.930 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.497 5.497 18 C 0.062 3.938 19 C -0.123 4.123 20 H 0.097 0.903 21 C -0.093 4.093 22 C -0.587 4.587 23 S 2.428 3.572 24 O -0.932 6.932 25 O -0.935 6.935 26 C -0.618 4.618 27 H 0.150 0.850 28 C 0.104 3.896 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.113 0.887 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 12.094 22.305 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 H 0.078 0.922 4 C 0.294 3.706 5 O -0.401 6.401 6 N -0.334 5.334 7 C -0.074 4.074 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.223 5.223 18 C -0.066 4.066 19 C -0.144 4.144 20 H 0.115 0.885 21 C -0.131 4.131 22 C -0.717 4.717 23 S 2.609 3.391 24 O -0.929 6.929 25 O -0.932 6.932 26 C -0.727 4.727 27 H 0.168 0.832 28 C -0.023 4.023 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.131 0.869 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.194 10.742 21.853 24.352 hybrid contribution -1.315 0.446 -0.149 1.396 sum -1.509 11.188 21.704 24.465 Atomic orbital electron populations 1.21989 0.92192 1.03708 1.02576 1.21882 0.97434 0.95968 0.90527 0.92246 1.19997 0.80588 0.85945 0.84050 1.90650 1.41360 1.22275 1.85833 1.48100 1.59606 1.18353 1.07331 1.21941 0.97370 0.84788 1.03328 1.19297 0.96665 0.91491 0.79877 1.21425 0.99329 1.25116 1.10651 0.92457 1.24940 0.95991 0.96737 0.96469 1.69936 1.24228 1.40328 1.18816 0.86496 0.82153 0.80032 0.78718 1.20692 1.21092 1.19876 1.65131 1.10686 1.46456 1.00025 1.22522 0.94053 0.97503 0.92494 1.22969 0.98697 0.96356 0.96385 0.88463 1.21613 0.91706 1.05164 0.94665 1.31115 1.06456 1.14953 1.19138 1.07756 0.76335 0.76609 0.78361 1.93609 1.72139 1.65016 1.62186 1.93623 1.69715 1.49406 1.80416 1.31420 1.23092 1.08451 1.09736 0.83205 1.21481 0.87262 1.04636 0.88879 0.90265 0.90814 0.92212 0.93935 0.90593 0.91506 0.95064 0.93731 0.92711 0.89280 0.90822 0.89170 0.88843 0.84601 0.84485 0.86881 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.57 37.16 0.32 -1.51 16 2 C 0.05 0.79 1.33 -68.86 -0.09 0.70 16 3 H 0.06 0.75 7.78 -51.93 -0.40 0.34 16 4 C 0.51 10.41 6.51 -10.99 -0.07 10.34 16 5 O -0.53 -12.92 13.92 5.56 0.08 -12.84 16 6 N -0.60 -12.59 2.86 -182.95 -0.52 -13.11 16 7 C 0.07 1.07 9.80 59.85 0.59 1.66 16 8 C 0.25 6.43 5.18 -5.19 -0.03 6.41 16 9 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 13 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 17 N -0.50 -6.79 4.94 -225.77 -1.12 -7.90 16 18 C 0.06 0.55 6.22 -2.85 -0.02 0.53 16 19 C -0.12 -0.90 2.75 -89.34 -0.25 -1.15 16 20 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.09 -0.42 6.27 -25.60 -0.16 -0.58 16 22 C -0.59 -2.92 7.40 38.97 0.29 -2.63 16 23 S 2.43 23.58 6.00 -107.50 -0.64 22.94 16 24 O -0.93 -12.53 18.14 -57.68 -1.05 -13.57 16 25 O -0.93 -12.31 18.14 -57.68 -1.05 -13.36 16 26 C -0.62 -6.15 2.92 -26.34 -0.08 -6.23 16 27 H 0.15 1.31 8.12 -51.29 -0.42 0.89 16 28 C 0.10 1.49 5.02 -3.94 -0.02 1.47 16 29 H 0.08 1.00 5.31 -51.93 -0.28 0.72 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.54 6.87 -51.93 -0.36 0.19 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 34 H 0.07 0.83 4.20 -51.93 -0.22 0.61 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.32 7.37 -51.93 -0.38 0.94 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.54 6.42 -51.93 -0.33 0.21 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.11 1.91 7.09 -51.93 -0.37 1.54 16 45 H 0.06 0.86 7.80 -51.93 -0.40 0.46 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -38.47 363.29 -9.97 -48.44 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.92 Total: -2.41 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 0.06 Total: -4.55 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.90 Total: -46.97 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.02 Total: -39.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 23.58 SS G_CDS: -0.64 Total: 22.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.47 -9.97 -48.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352990541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.129 kcal (2) G-P(sol) polarization free energy of solvation -38.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds