Wall clock time and date at job start Tue Mar 31 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47196 * 2 1 4 4 C 1.50701 * 109.46983 * 239.99576 * 2 1 3 5 5 O 1.21284 * 120.00129 * 254.81143 * 4 2 1 6 6 N 1.34777 * 119.99819 * 74.82072 * 4 2 1 7 7 C 1.46500 * 119.99951 * 3.43252 * 6 4 2 8 8 C 1.46503 * 120.00105 * 183.43813 * 6 4 2 9 9 C 1.50699 * 109.47195 * 89.99266 * 8 6 4 10 10 H 1.07995 * 119.99965 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99893 * 179.97438 * 9 8 6 12 12 N 1.31509 * 119.99768 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99975 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47239 * 60.00026 * 13 11 9 15 15 H 1.48496 * 109.47152 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47184 * 300.00099 * 13 11 9 17 17 N 1.46907 * 109.47153 * 120.00022 * 2 1 3 18 18 C 1.48485 * 110.99925 * 179.58632 * 17 2 1 19 19 C 1.54551 * 104.86243 * 158.42875 * 18 17 2 20 20 H 1.08993 * 110.02115 * 96.15170 * 19 18 17 21 21 C 1.52073 * 109.39374 * 216.66072 * 19 18 17 22 22 C 1.54172 * 111.75657 * 136.40003 * 21 19 18 23 23 S 1.82986 * 103.42406 * 329.10300 * 22 21 19 24 24 O 1.42101 * 109.41074 * 274.39015 * 23 22 21 25 25 O 1.42094 * 109.40931 * 141.16558 * 23 22 21 26 26 C 1.54295 * 104.94184 * 337.80893 * 19 18 17 27 27 H 1.08999 * 112.59684 * 119.86828 * 26 19 18 28 28 C 1.48623 * 110.99636 * 295.00163 * 17 2 1 29 29 H 1.09005 * 109.47089 * 176.27702 * 1 2 3 30 30 H 1.08997 * 109.47429 * 296.27302 * 1 2 3 31 31 H 1.09000 * 109.47065 * 56.27725 * 1 2 3 32 32 H 1.09004 * 109.47028 * 84.62402 * 7 6 4 33 33 H 1.08998 * 109.47328 * 204.62145 * 7 6 4 34 34 H 1.09004 * 109.47164 * 324.62790 * 7 6 4 35 35 H 1.08996 * 109.46886 * 209.99789 * 8 6 4 36 36 H 1.09004 * 109.46869 * 329.99766 * 8 6 4 37 37 H 0.97003 * 120.00063 * 180.02562 * 12 11 9 38 38 H 1.09004 * 110.36275 * 277.27197 * 18 17 2 39 39 H 1.09003 * 110.36685 * 39.57763 * 18 17 2 40 40 H 1.09000 * 109.04135 * 256.97655 * 21 19 18 41 41 H 1.08998 * 109.04516 * 15.91394 * 21 19 18 42 42 H 1.09000 * 110.76915 * 210.60839 * 22 21 19 43 43 H 1.09003 * 110.63041 * 87.53392 * 22 21 19 44 44 H 1.09001 * 110.46236 * 81.62582 * 28 17 2 45 45 H 1.08997 * 110.45934 * 319.04453 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4939 -1.8284 -1.1393 6 7 1.9688 -0.1036 -2.4321 7 6 1.4815 1.2744 -2.5320 8 6 2.3869 -0.8219 -3.6386 9 6 1.2047 -1.5496 -4.2251 10 1 0.2385 -1.4832 -3.7472 11 6 1.3564 -2.2991 -5.3723 12 7 2.5329 -2.3794 -5.9544 13 14 -0.1091 -3.2005 -6.0997 14 1 -1.1693 -2.2210 -6.4488 15 1 0.3145 -3.9277 -7.3232 16 1 -0.6377 -4.1689 -5.1058 17 7 2.0197 -0.6925 1.1995 18 6 3.5040 -0.7210 1.2288 19 6 3.8670 -0.9436 2.7145 20 1 4.0449 -2.0026 2.9005 21 6 5.1177 -0.1477 3.0534 22 6 4.9855 0.5749 4.4089 23 16 3.1943 0.9295 4.5282 24 8 2.9092 2.1510 3.8604 25 8 2.7631 0.7371 5.8684 26 6 2.6279 -0.4691 3.5021 27 1 2.1875 -1.2617 4.1070 28 6 1.6443 0.0477 2.4324 29 1 -0.3633 -1.0255 -0.0667 30 1 -0.3634 0.4549 0.9215 31 1 -0.3633 0.5705 -0.8547 32 1 2.3019 1.9649 -2.3368 33 1 1.0897 1.4495 -3.5339 34 1 0.6902 1.4339 -1.7994 35 1 2.7748 -0.1113 -4.3684 36 1 3.1651 -1.5407 -3.3821 37 1 2.6397 -2.9065 -6.7618 38 1 3.8797 -1.5430 0.6194 39 1 3.9086 0.2282 0.8775 40 1 5.9704 -0.8256 3.0942 41 1 5.2902 0.5933 2.2729 42 1 5.5604 1.5009 4.4109 43 1 5.3024 -0.0761 5.2237 44 1 0.6172 -0.1814 2.7166 45 1 1.7699 1.1205 2.2858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352990543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:12 Heat of formation + Delta-G solvation = -80.681968 kcal Electronic energy + Delta-G solvation = -27618.857651 eV Core-core repulsion = 23764.398103 eV Total energy + Delta-G solvation = -3854.459547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.24593 -38.59289 -37.30885 -36.37162 -35.32730 -34.80355 -32.80366 -32.01936 -29.75071 -28.56309 -27.61750 -25.99938 -24.41373 -23.93059 -22.75804 -21.29897 -20.36564 -19.15910 -18.40395 -17.55160 -16.80743 -16.60017 -16.51232 -16.22193 -15.68378 -15.34803 -14.95588 -14.67155 -14.33308 -14.06194 -13.90776 -13.75884 -13.57727 -13.04508 -12.75580 -12.51883 -12.43498 -12.36996 -12.30416 -12.12646 -11.98748 -11.92309 -11.85087 -11.56830 -11.31856 -11.25046 -11.12722 -11.03611 -10.89635 -10.84478 -10.57017 -10.46558 -10.16587 -9.65370 -8.88976 -8.45422 -8.43600 -7.65179 -6.06013 -4.10947 -0.30797 2.16503 3.14084 3.30824 3.34215 3.35494 3.41014 3.48361 3.66240 3.82499 4.06405 4.14186 4.27846 4.33122 4.43465 4.50991 4.79108 4.90803 4.93019 5.05668 5.19417 5.21068 5.28658 5.29545 5.37195 5.42296 5.48789 5.54049 5.54753 5.75933 5.77236 5.86107 5.89008 6.04278 6.14762 6.36488 6.67982 6.78531 7.07728 7.41397 7.52275 7.90489 8.21377 8.38844 8.88194 9.07770 9.54349 11.01988 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.002871 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.713162 B = 9752.021098 C = 9976.904739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 H 0.063 0.937 4 C 0.511 3.489 5 O -0.525 6.525 6 N -0.602 5.602 7 C 0.075 3.925 8 C 0.247 3.753 9 C -0.527 4.527 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.475 5.475 18 C 0.034 3.966 19 C -0.079 4.079 20 H 0.107 0.893 21 C -0.118 4.118 22 C -0.583 4.583 23 S 2.385 3.615 24 O -0.930 6.930 25 O -0.941 6.941 26 C -0.548 4.548 27 H 0.156 0.844 28 C 0.042 3.958 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.110 0.890 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.098 0.902 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 8.579 19.856 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 H 0.081 0.919 4 C 0.296 3.704 5 O -0.401 6.401 6 N -0.334 5.334 7 C -0.069 4.069 8 C 0.128 3.872 9 C -0.566 4.566 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.199 5.199 18 C -0.094 4.094 19 C -0.099 4.099 20 H 0.125 0.875 21 C -0.157 4.157 22 C -0.713 4.713 23 S 2.569 3.431 24 O -0.927 6.927 25 O -0.938 6.938 26 C -0.658 4.658 27 H 0.174 0.826 28 C -0.087 4.087 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.117 0.883 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.025 8.089 20.152 21.924 hybrid contribution -0.043 -0.282 -0.922 0.966 sum 2.982 7.806 19.229 20.967 Atomic orbital electron populations 1.21826 0.92004 1.03924 1.02247 1.21927 0.97777 0.96118 0.90412 0.91924 1.19964 0.79855 0.86633 0.83937 1.90649 1.45127 1.18762 1.85513 1.48134 1.63475 1.13626 1.08211 1.21809 0.98322 0.83402 1.03331 1.19283 0.96246 0.91979 0.79715 1.21400 0.95722 1.30086 1.09411 0.92486 1.24932 0.96072 0.96304 0.96761 1.69919 1.22510 1.40905 1.20088 0.86556 0.82534 0.79925 0.78392 1.20247 1.21189 1.20143 1.65325 1.09014 1.45959 0.99646 1.23495 0.88542 1.02745 0.94586 1.21797 0.89763 1.02727 0.95603 0.87503 1.21791 0.99385 1.00333 0.94189 1.30387 1.24465 1.10587 1.05876 1.09226 0.79825 0.77913 0.76148 1.93615 1.82968 1.40131 1.75987 1.93603 1.79823 1.86738 1.33593 1.30855 1.05076 1.18271 1.11595 0.82639 1.23043 0.98846 0.97683 0.89126 0.90883 0.91922 0.90869 0.93892 0.90477 0.92085 0.95055 0.93825 0.92654 0.87156 0.93295 0.88421 0.89385 0.84356 0.84422 0.88326 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.97 37.16 0.33 -1.57 16 2 C 0.05 0.75 1.42 -68.86 -0.10 0.65 16 3 H 0.06 0.83 7.27 -51.93 -0.38 0.46 16 4 C 0.51 10.33 6.40 -10.98 -0.07 10.26 16 5 O -0.52 -12.72 14.37 5.55 0.08 -12.64 16 6 N -0.60 -12.48 2.86 -182.95 -0.52 -13.00 16 7 C 0.08 1.17 9.84 59.85 0.59 1.76 16 8 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 9 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 13 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 N -0.47 -6.64 4.92 -223.38 -1.10 -7.74 16 18 C 0.03 0.43 5.06 -2.13 -0.01 0.42 16 19 C -0.08 -0.68 3.50 -89.60 -0.31 -0.99 16 20 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.12 -0.75 5.92 -26.59 -0.16 -0.91 16 22 C -0.58 -3.17 7.38 37.77 0.28 -2.89 16 23 S 2.39 20.32 5.85 -107.50 -0.63 19.69 16 24 O -0.93 -10.79 16.39 -57.72 -0.95 -11.73 16 25 O -0.94 -10.92 18.14 -57.72 -1.05 -11.97 16 26 C -0.55 -4.65 4.21 -25.40 -0.11 -4.76 16 27 H 0.16 1.06 8.14 -51.93 -0.42 0.64 16 28 C 0.04 0.45 5.10 -2.22 -0.01 0.44 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.66 6.89 -51.93 -0.36 0.31 16 31 H 0.07 0.93 5.88 -51.93 -0.31 0.63 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 34 H 0.06 0.79 4.62 -51.93 -0.24 0.55 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.27 7.38 -51.93 -0.38 0.88 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.11 1.70 6.76 -51.93 -0.35 1.35 16 39 H 0.05 0.58 7.06 -51.93 -0.37 0.22 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.57 7.11 -51.93 -0.37 0.20 16 42 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16 45 H 0.07 0.78 6.18 -51.93 -0.32 0.46 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -37.42 360.43 -9.84 -47.26 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.81 Total: -1.61 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.01 Total: -4.72 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.88 Total: -46.41 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.91 Total: -36.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 20.32 SS G_CDS: -0.63 Total: 19.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.42 -9.84 -47.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352990543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.425 kcal (2) G-P(sol) polarization free energy of solvation -37.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds