Wall clock time and date at job start Tue Mar 31 2020 04:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47565 * 2 1 4 4 C 1.50706 * 109.46873 * 240.00006 * 2 1 3 5 5 O 1.21282 * 119.99716 * 246.92322 * 4 2 1 6 6 N 1.34776 * 119.99946 * 66.93161 * 4 2 1 7 7 C 1.46500 * 119.99973 * 4.65217 * 6 4 2 8 8 C 1.46496 * 120.00012 * 184.65903 * 6 4 2 9 9 C 1.50699 * 109.47306 * 89.99211 * 8 6 4 10 10 H 1.07997 * 120.00033 * 0.02562 * 9 8 6 11 11 C 1.37883 * 120.00270 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99451 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00078 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47224 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47319 * 119.99948 * 13 11 9 16 16 H 1.48501 * 109.47193 * 239.99828 * 13 11 9 17 17 N 1.46896 * 109.47323 * 120.00379 * 2 1 3 18 18 C 1.48851 * 111.78344 * 179.88141 * 17 2 1 19 19 C 1.47877 * 104.89282 * 115.20322 * 18 17 2 20 20 H 1.08997 * 108.46018 * 281.83750 * 19 18 17 21 21 C 1.57363 * 101.65084 * 35.02493 * 19 18 17 22 22 H 1.09005 * 110.53002 * 66.63076 * 21 19 18 23 23 C 1.51351 * 103.18623 * 184.67919 * 21 19 18 24 24 C 1.56359 * 106.21238 * 306.09184 * 23 21 19 25 25 S 1.78542 * 127.21267 * 149.57721 * 19 18 17 26 26 O 1.42103 * 109.58264 * 102.18911 * 25 19 18 27 27 O 1.42094 * 109.58323 * 328.33135 * 25 19 18 28 28 C 1.50151 * 110.99850 * 299.99551 * 17 2 1 29 29 H 1.09006 * 109.47433 * 184.31694 * 1 2 3 30 30 H 1.09001 * 109.47340 * 304.31305 * 1 2 3 31 31 H 1.08998 * 109.47598 * 64.31917 * 1 2 3 32 32 H 1.09001 * 109.46899 * 96.27616 * 7 6 4 33 33 H 1.09002 * 109.47261 * 216.27454 * 7 6 4 34 34 H 1.09002 * 109.46992 * 336.27454 * 7 6 4 35 35 H 1.08995 * 109.47209 * 209.99423 * 8 6 4 36 36 H 1.08997 * 109.47275 * 329.99637 * 8 6 4 37 37 H 0.97006 * 119.99153 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.90055 * 356.45132 * 18 17 2 39 39 H 1.08994 * 110.46231 * 234.24371 * 18 17 2 40 40 H 1.08999 * 110.10687 * 186.90766 * 23 21 19 41 41 H 1.09000 * 110.11038 * 65.27522 * 23 21 19 42 42 H 1.08996 * 110.45233 * 149.08581 * 24 23 21 43 43 H 1.09005 * 110.44342 * 271.63071 * 24 23 21 44 44 H 1.09005 * 110.80199 * 94.06609 * 28 17 2 45 45 H 1.09000 * 110.97192 * 330.64102 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.6225 -1.7645 -1.1236 6 7 1.8256 -0.1743 -2.4497 7 6 1.2040 1.1465 -2.5733 8 6 2.2225 -0.9124 -3.6513 9 6 1.0757 -1.7740 -4.1133 10 1 0.1442 -1.7717 -3.5668 11 6 1.2152 -2.5646 -5.2344 12 7 2.3495 -2.5670 -5.9001 13 14 -0.2066 -3.6319 -5.8074 14 1 -1.3625 -3.4494 -4.8932 15 1 -0.5981 -3.2374 -7.1845 16 1 0.2103 -5.0572 -5.8006 17 7 2.0196 -0.6925 1.1993 18 6 3.5069 -0.7250 1.2499 19 6 3.8647 0.0832 2.4354 20 1 3.7803 1.1377 2.1725 21 6 2.6849 -0.2568 3.4196 22 1 2.7285 -1.3033 3.7216 23 6 2.9526 0.6460 4.6045 24 6 4.4233 0.3571 5.0500 25 16 5.2879 -0.1232 3.4935 26 8 6.2669 0.8551 3.1713 27 8 5.6434 -1.4977 3.5508 28 6 1.5383 -0.0117 2.4480 29 1 -0.3634 -1.0248 0.0774 30 1 -0.3634 0.5793 0.8488 31 1 -0.3634 0.4453 -0.9261 32 1 1.9799 1.9046 -2.6798 33 1 0.5571 1.1630 -3.4504 34 1 0.6126 1.3545 -1.6817 35 1 2.4881 -0.2079 -4.4393 36 1 3.0817 -1.5431 -3.4231 37 1 2.4475 -3.1229 -6.6890 38 1 3.9188 -0.2777 0.3453 39 1 3.8620 -1.7490 1.3655 40 1 2.2629 0.4138 5.4159 41 1 2.8485 1.6906 4.3109 42 1 4.8752 1.2528 5.4758 43 1 4.4494 -0.4623 5.7685 44 1 0.6190 -0.4720 2.8101 45 1 1.3948 1.0557 2.2799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352990545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:15 Heat of formation + Delta-G solvation = -63.920077 kcal Electronic energy + Delta-G solvation = -27576.207155 eV Core-core repulsion = 23722.474458 eV Total energy + Delta-G solvation = -3853.732697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57790 -38.77545 -37.27957 -36.24945 -35.33708 -34.81183 -32.88929 -32.09247 -29.37655 -28.60969 -27.55503 -26.03981 -24.70175 -23.64241 -22.82282 -21.27765 -20.96067 -18.98408 -18.32498 -17.66211 -16.83123 -16.54862 -16.39349 -15.97332 -15.79407 -15.24525 -15.06286 -14.64478 -14.46552 -14.15795 -14.01721 -13.64771 -13.24378 -13.05288 -12.89637 -12.64324 -12.43686 -12.34316 -12.26432 -12.09507 -12.05691 -11.95314 -11.75596 -11.54040 -11.37380 -11.25670 -11.15657 -11.14009 -10.98660 -10.82510 -10.57732 -10.42121 -10.14682 -9.59912 -8.86999 -8.43472 -8.35272 -7.63380 -6.03935 -4.08743 -0.26807 2.31116 2.99196 3.30142 3.34310 3.38661 3.43447 3.46433 3.57854 3.75333 3.93532 4.05752 4.34126 4.35147 4.45031 4.55907 4.68731 4.90767 4.93904 5.02959 5.12676 5.15628 5.16909 5.25781 5.30783 5.37785 5.46222 5.50545 5.59242 5.62605 5.73730 5.80916 5.89613 6.02501 6.13677 6.33691 6.68424 6.80698 7.09775 7.45222 7.54048 7.92690 8.23544 8.40640 8.90701 9.09683 9.56467 11.04186 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.003019 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.124624 B = 9270.845495 C = 9719.474812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 H 0.058 0.942 4 C 0.508 3.492 5 O -0.522 6.522 6 N -0.602 5.602 7 C 0.071 3.929 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 N -0.499 5.499 18 C 0.108 3.892 19 C -0.638 4.638 20 H 0.136 0.864 21 C -0.103 4.103 22 H 0.112 0.888 23 C -0.095 4.095 24 C -0.586 4.586 25 S 2.432 3.568 26 O -0.938 6.938 27 O -0.928 6.928 28 C 0.066 3.934 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.093 0.907 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 12.116 22.649 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 H 0.075 0.925 4 C 0.293 3.707 5 O -0.397 6.397 6 N -0.335 5.335 7 C -0.073 4.073 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.208 1.208 17 N -0.224 5.224 18 C -0.020 4.020 19 C -0.747 4.747 20 H 0.154 0.846 21 C -0.123 4.123 22 H 0.130 0.870 23 C -0.134 4.134 24 C -0.716 4.716 25 S 2.613 3.387 26 O -0.935 6.935 27 O -0.925 6.925 28 C -0.062 4.062 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.112 0.888 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.608 10.687 22.245 24.687 hybrid contribution -1.334 0.735 -0.324 1.557 sum -1.942 11.422 21.921 24.794 Atomic orbital electron populations 1.21952 0.92123 1.03911 1.02458 1.21836 0.97415 0.95721 0.90485 0.92465 1.20025 0.80716 0.86009 0.84000 1.90686 1.40947 1.22234 1.85844 1.48111 1.59879 1.18220 1.07330 1.21912 0.97735 0.84880 1.02807 1.19283 0.96768 0.91405 0.79884 1.21459 0.99360 1.24993 1.10649 0.92396 1.24948 0.96041 0.96745 0.96441 1.69950 1.24455 1.40168 1.18739 0.86435 0.82254 0.80407 0.78262 1.19806 1.21021 1.20845 1.64581 1.07876 1.49928 1.00056 1.20916 0.87910 1.00218 0.92960 1.31442 1.20938 1.11417 1.10941 0.84628 1.22683 0.94599 1.02560 0.92491 0.86995 1.21565 0.93361 1.00600 0.97881 1.31108 1.07997 1.12406 1.20071 1.07637 0.76059 0.75514 0.79446 1.93617 1.55132 1.62186 1.82570 1.93618 1.81459 1.31981 1.85400 1.22608 0.96889 0.97920 0.88752 0.90779 0.92186 0.90395 0.93850 0.90903 0.91421 0.95091 0.93728 0.92767 0.90961 0.88196 0.88579 0.89584 0.84537 0.84398 0.88826 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.57 37.15 0.32 -1.50 16 2 C 0.06 0.84 1.37 -68.87 -0.09 0.74 16 3 H 0.06 0.71 7.63 -51.93 -0.40 0.31 16 4 C 0.51 10.39 6.18 -10.98 -0.07 10.32 16 5 O -0.52 -12.99 14.68 5.56 0.08 -12.91 16 6 N -0.60 -12.60 2.86 -182.96 -0.52 -13.12 16 7 C 0.07 1.09 9.81 59.85 0.59 1.67 16 8 C 0.25 6.44 5.22 -5.20 -0.03 6.41 16 9 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 13 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 N -0.50 -6.82 4.84 -227.00 -1.10 -7.92 16 18 C 0.11 1.51 5.30 -5.22 -0.03 1.48 16 19 C -0.64 -6.09 2.81 -26.84 -0.08 -6.17 16 20 H 0.14 1.05 8.05 -51.10 -0.41 0.64 16 21 C -0.10 -0.75 2.86 -89.45 -0.26 -1.01 16 22 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 23 C -0.10 -0.41 6.26 -25.76 -0.16 -0.57 16 24 C -0.59 -2.80 7.41 38.96 0.29 -2.51 16 25 S 2.43 23.09 5.99 -107.50 -0.64 22.44 16 26 O -0.94 -12.05 18.14 -57.68 -1.05 -13.09 16 27 O -0.93 -12.42 18.14 -57.68 -1.05 -13.46 16 28 C 0.07 0.58 5.18 -2.37 -0.01 0.56 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.54 7.29 -51.93 -0.38 0.16 16 31 H 0.08 0.96 5.45 -51.93 -0.28 0.68 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 34 H 0.07 0.82 4.08 -51.93 -0.21 0.61 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.12 6.81 -51.93 -0.35 0.77 16 39 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.41 7.80 -51.93 -0.40 0.00 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -38.80 364.67 -10.02 -48.83 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.01 Total: -3.01 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 0.05 Total: -4.15 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.89 Total: -47.03 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -2.01 Total: -39.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 23.09 SS G_CDS: -0.64 Total: 22.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.80 -10.02 -48.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352990545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.091 kcal (2) G-P(sol) polarization free energy of solvation -38.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds