Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 120.00066 * 2 1 4 4 C 1.50706 * 109.47128 * 90.00240 * 3 2 1 5 5 H 1.08000 * 119.99302 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72498 * 4 3 2 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.34771 * 119.99478 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00631 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47430 * 179.97438 * 14 12 2 16 16 N 1.46895 * 109.47086 * 179.97438 * 15 14 12 17 17 C 1.48661 * 111.00211 * 170.00009 * 16 15 14 18 18 C 1.54731 * 104.66705 * 159.82162 * 17 16 15 19 19 H 1.09002 * 110.36658 * 96.03301 * 18 17 16 20 20 C 1.53074 * 108.55705 * 217.78201 * 18 17 16 21 21 C 1.54948 * 109.09315 * 143.71525 * 20 18 17 22 22 S 1.83823 * 101.21051 * 318.32949 * 21 20 18 23 23 O 1.42097 * 109.61305 * 283.34204 * 22 21 20 24 24 O 1.42095 * 109.77768 * 149.43924 * 22 21 20 25 25 C 1.54830 * 104.62114 * 337.31555 * 18 17 16 26 26 H 1.08999 * 112.09646 * 119.69811 * 25 18 17 27 27 C 1.48865 * 111.00220 * 284.55062 * 16 15 14 28 28 H 1.09004 * 109.47155 * 89.99624 * 1 2 3 29 29 H 1.08993 * 109.47381 * 209.99784 * 1 2 3 30 30 H 1.09002 * 109.46817 * 330.00021 * 1 2 3 31 31 H 1.09001 * 109.47786 * 330.00513 * 3 2 1 32 32 H 1.08998 * 109.47558 * 210.00376 * 3 2 1 33 33 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46570 * 299.99751 * 14 12 2 35 35 H 1.08998 * 109.47108 * 59.99583 * 14 12 2 36 36 H 1.08998 * 109.47190 * 299.99924 * 15 14 12 37 37 H 1.09003 * 109.46571 * 60.00034 * 15 14 12 38 38 H 1.09001 * 110.39391 * 278.61783 * 17 16 15 39 39 H 1.09002 * 110.39346 * 40.90702 * 17 16 15 40 40 H 1.08998 * 109.55194 * 263.63346 * 20 18 17 41 41 H 1.08993 * 109.55471 * 23.79367 * 20 18 17 42 42 H 1.09005 * 111.06765 * 200.34711 * 21 20 18 43 43 H 1.09000 * 111.10697 * 76.33138 * 21 20 18 44 44 H 1.08991 * 110.55297 * 316.95009 * 27 16 15 45 45 H 1.09004 * 110.55551 * 79.78143 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4209 5 1 2.0975 1.0960 2.2417 6 6 3.1315 2.8747 1.6729 7 7 3.5640 3.6118 0.6733 8 14 3.4435 3.4135 3.4341 9 1 4.2407 2.3754 4.1355 10 1 4.1923 4.6959 3.4341 11 1 2.1460 3.5973 4.1326 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 7 1.6450 -4.9074 -0.0032 17 6 2.5621 -6.0521 -0.2452 18 6 1.7964 -7.2869 0.2867 19 1 1.2765 -7.7909 -0.5281 20 6 2.7979 -8.2281 0.9607 21 6 2.1261 -8.8849 2.1928 22 16 1.2200 -7.4555 2.9102 23 8 2.1319 -6.6077 3.5949 24 8 0.0433 -7.9110 3.5637 25 6 0.7781 -6.7088 1.2997 26 1 -0.2514 -6.9285 1.0169 27 6 1.0763 -5.1957 1.3420 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6085 2.0284 -0.5137 32 1 3.1499 1.1384 -0.5139 33 1 4.0446 4.4355 0.8506 34 1 0.7584 -2.5306 0.8881 35 1 0.7590 -2.5294 -0.8919 36 1 3.0062 -3.5768 -0.8926 37 1 3.0062 -3.5783 0.8874 38 1 2.7625 -6.1595 -1.3113 39 1 3.4938 -5.9150 0.3038 40 1 3.1028 -9.0016 0.2558 41 1 3.6724 -7.6618 1.2806 42 1 2.8728 -9.2655 2.8898 43 1 1.4374 -9.6738 1.8904 44 1 1.8042 -4.9707 2.1213 45 1 0.1585 -4.6290 1.4989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353114507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -90.035478 kcal Electronic energy + Delta-G solvation = -26670.890381 eV Core-core repulsion = 22816.025235 eV Total energy + Delta-G solvation = -3854.865146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.97667 -38.85685 -37.37327 -36.40933 -35.47371 -34.74813 -32.67974 -32.04087 -29.97396 -28.79774 -27.53994 -25.76192 -24.26999 -24.11290 -22.37026 -21.36631 -20.45678 -19.15808 -18.31955 -17.61923 -17.06957 -16.52799 -16.47569 -16.19576 -15.72374 -15.38428 -15.17173 -14.71450 -14.49155 -14.25653 -14.12510 -13.90578 -13.76342 -13.03842 -12.86012 -12.54039 -12.41223 -12.37100 -12.18282 -12.15355 -12.11120 -11.89436 -11.84772 -11.71924 -11.56454 -11.34195 -11.11416 -10.98007 -10.90955 -10.75430 -10.53860 -10.52554 -10.14219 -9.62755 -8.90332 -8.76327 -8.41758 -7.62562 -6.02800 -4.07661 -0.37950 2.06823 3.09141 3.33562 3.37740 3.39092 3.41123 3.47228 3.61101 3.76710 3.97103 4.07655 4.15670 4.21813 4.39767 4.47510 4.62994 4.83172 4.83909 5.00974 5.10439 5.14565 5.22224 5.28397 5.31394 5.32110 5.36335 5.44044 5.54327 5.59522 5.61589 5.82776 5.90949 5.99283 6.04509 6.23603 6.49619 6.75233 7.07147 7.45740 7.55758 7.93591 8.25063 8.43719 8.91475 9.11021 9.57505 11.05252 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.002615 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.954582 B =10706.416462 C =11347.911696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.133 4.133 15 C 0.055 3.945 16 N -0.499 5.499 17 C 0.031 3.969 18 C -0.079 4.079 19 H 0.107 0.893 20 C -0.124 4.124 21 C -0.579 4.579 22 S 2.376 3.624 23 O -0.922 6.922 24 O -0.938 6.938 25 C -0.547 4.547 26 H 0.155 0.845 27 C 0.037 3.963 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.077 0.923 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 -26.884 -2.445 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.174 4.174 15 C -0.073 4.073 16 N -0.223 5.223 17 C -0.098 4.098 18 C -0.099 4.099 19 H 0.125 0.875 20 C -0.163 4.163 21 C -0.709 4.709 22 S 2.559 3.441 23 O -0.919 6.919 24 O -0.935 6.935 25 C -0.657 4.657 26 H 0.173 0.827 27 C -0.092 4.092 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.095 0.905 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.826 -26.321 -1.953 27.262 hybrid contribution 0.775 0.128 0.756 1.090 sum -6.050 -26.194 -1.197 26.910 Atomic orbital electron populations 1.21638 0.81422 1.02561 1.00416 1.48156 1.06203 1.07881 1.71257 1.19279 0.92555 0.78146 0.97461 1.21405 1.36429 1.06430 0.92308 0.92543 1.24936 0.95323 0.96398 0.97453 1.69924 1.38133 1.14605 1.30803 0.86556 0.78376 0.77821 0.84656 1.20156 1.21170 1.20226 1.20284 0.88070 0.85174 0.77471 1.90666 1.13974 1.87371 1.50383 1.21577 0.99166 0.92562 1.04063 1.22058 0.94939 0.87110 1.03193 1.65752 1.29734 1.01965 1.24832 1.23446 0.94632 0.89207 1.02491 1.22117 0.93736 0.96091 0.97929 0.87509 1.22235 0.98726 0.99336 0.95957 1.30550 1.13841 1.17237 1.09241 1.09609 0.76787 0.79079 0.78649 1.93660 1.64034 1.64339 1.69913 1.93609 1.46777 1.80741 1.72329 1.30974 1.09145 1.06433 1.19121 0.82738 1.23145 1.02363 0.90450 0.93233 0.93725 0.92416 0.90838 0.95047 0.93850 0.92668 0.89658 0.88786 0.89495 0.92832 0.88949 0.92379 0.88166 0.89071 0.84506 0.84443 0.90487 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.89 2.86 -182.95 -0.52 -13.41 16 3 C 0.24 6.50 5.16 -5.19 -0.03 6.47 16 4 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.50 10.41 7.67 -10.99 -0.08 10.33 16 13 O -0.55 -13.66 15.56 5.55 0.09 -13.57 16 14 C -0.13 -1.93 4.38 -27.88 -0.12 -2.05 16 15 C 0.06 0.75 4.13 -3.83 -0.02 0.73 16 16 N -0.50 -5.25 5.36 -229.45 -1.23 -6.48 16 17 C 0.03 0.25 5.91 -1.94 -0.01 0.23 16 18 C -0.08 -0.43 3.58 -88.71 -0.32 -0.75 16 19 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 20 C -0.12 -0.52 5.86 -25.66 -0.15 -0.67 16 21 C -0.58 -2.40 7.46 38.19 0.28 -2.12 16 22 S 2.38 19.01 5.78 -107.50 -0.62 18.39 16 23 O -0.92 -11.04 16.50 -57.70 -0.95 -12.00 16 24 O -0.94 -10.60 18.16 -57.70 -1.05 -11.65 16 25 C -0.55 -3.72 4.26 -25.10 -0.11 -3.83 16 26 H 0.15 0.77 8.14 -51.93 -0.42 0.34 16 27 C 0.04 0.36 5.47 -2.06 -0.01 0.35 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.09 1.12 6.71 -51.93 -0.35 0.77 16 35 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 36 H 0.09 1.22 8.04 -51.93 -0.42 0.80 16 37 H 0.05 0.82 7.74 -51.93 -0.40 0.41 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.48 7.10 -51.93 -0.37 0.11 16 40 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.42 7.19 -51.93 -0.37 0.05 16 42 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.86 6.15 -51.93 -0.32 0.54 16 45 H 0.10 0.88 7.78 -51.93 -0.40 0.48 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -38.81 369.27 -10.49 -49.30 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -7.12 Total: -3.92 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.37 Total: -3.20 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.02 Total: -46.08 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.91 Total: -37.22 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 19.01 SS G_CDS: -0.62 Total: 18.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.81 -10.49 -49.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353114507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.737 kcal (2) G-P(sol) polarization free energy of solvation -38.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds