Wall clock time and date at job start Tue Mar 31 2020 05:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99845 * 2 1 4 4 C 1.50700 * 109.46807 * 90.00412 * 3 2 1 5 5 H 1.08000 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00338 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00302 * 179.72306 * 6 4 3 8 8 Si 1.86804 * 119.99640 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.47045 * 269.72767 * 8 6 4 10 10 H 1.48493 * 109.47135 * 29.72429 * 8 6 4 11 11 H 1.48503 * 109.46994 * 149.72832 * 8 6 4 12 12 C 1.34776 * 120.00091 * 180.02562 * 2 1 3 13 13 O 1.21549 * 120.00002 * 186.98730 * 12 2 1 14 14 C 1.47849 * 120.00104 * 6.98686 * 12 2 1 15 15 C 1.39574 * 120.14322 * 20.28983 * 14 12 2 16 16 C 1.37954 * 119.85452 * 179.79104 * 15 14 12 17 17 C 1.38370 * 120.14343 * 0.49025 * 16 15 14 18 18 C 1.50696 * 119.85603 * 179.72062 * 17 16 15 19 19 C 1.52996 * 109.47094 * 270.02235 * 18 17 16 20 20 H 1.09000 * 110.54168 * 303.60464 * 19 18 17 21 21 C 1.54229 * 110.60430 * 180.58575 * 19 18 17 22 22 C 1.51312 * 103.55906 * 241.48204 * 21 19 18 23 23 O 1.21223 * 125.40187 * 179.97438 * 22 21 19 24 24 N 1.33881 * 109.20723 * 0.02562 * 22 21 19 25 25 C 1.33885 * 114.47138 * 359.97438 * 24 22 21 26 26 O 1.21225 * 125.39140 * 179.97438 * 25 24 22 27 27 C 1.38361 * 120.28933 * 359.74025 * 17 16 15 28 28 C 1.37959 * 120.14334 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47411 * 85.96368 * 1 2 3 30 30 H 1.09005 * 109.46975 * 205.95935 * 1 2 3 31 31 H 1.08999 * 109.47397 * 325.96083 * 1 2 3 32 32 H 1.08996 * 109.47194 * 330.00573 * 3 2 1 33 33 H 1.08996 * 109.47458 * 210.00027 * 3 2 1 34 34 H 0.97003 * 119.99560 * 180.26922 * 7 6 4 35 35 H 1.08005 * 120.07660 * 0.02562 * 15 14 12 36 36 H 1.07998 * 119.93450 * 180.23558 * 16 15 14 37 37 H 1.09004 * 109.47069 * 30.02089 * 18 17 16 38 38 H 1.08994 * 109.47370 * 150.01938 * 18 17 16 39 39 H 1.08994 * 110.60636 * 0.02562 * 21 19 18 40 40 H 1.09008 * 110.60363 * 122.96496 * 21 19 18 41 41 H 0.96993 * 122.76457 * 179.97438 * 24 22 21 42 42 H 1.07992 * 119.92560 * 179.97438 * 27 17 16 43 43 H 1.08004 * 120.06980 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0974 1.0960 2.2417 6 6 3.1259 2.8779 1.6729 7 7 3.3404 3.2601 2.9129 8 14 3.7328 3.9293 0.2531 9 1 5.1090 3.5126 -0.1185 10 1 2.8307 3.7542 -0.9133 11 1 3.7413 5.3567 0.6626 12 6 2.1389 -1.1672 -0.0005 13 8 3.3476 -1.1711 0.1275 14 6 1.4079 -2.4428 -0.1568 15 6 0.1287 -2.4537 -0.7150 16 6 -0.5462 -3.6479 -0.8620 17 6 0.0382 -4.8319 -0.4483 18 6 -0.7075 -6.1318 -0.6062 19 6 -1.5384 -6.3990 0.6504 20 1 -0.9028 -6.4016 1.5359 21 6 -2.3022 -7.7328 0.5225 22 6 -3.7553 -7.3184 0.6021 23 8 -4.7043 -8.0703 0.5418 24 7 -3.8270 -5.9896 0.7485 25 6 -2.6403 -5.3712 0.7883 26 8 -2.4748 -4.1769 0.9142 27 6 1.3041 -4.8274 0.1102 28 6 1.9917 -3.6406 0.2584 29 1 -0.3634 0.0723 -1.0251 30 1 -0.3633 -0.9240 0.4499 31 1 -0.3634 0.8516 0.5752 32 1 1.6083 2.0284 -0.5137 33 1 3.1498 1.1385 -0.5138 34 1 3.8135 4.0882 3.0901 35 1 -0.3303 -1.5298 -1.0346 36 1 -1.5346 -3.6582 -1.2972 37 1 -1.3673 -6.0695 -1.4716 38 1 0.0049 -6.9441 -0.7503 39 1 -2.0899 -8.2061 -0.4361 40 1 -2.0482 -8.4008 1.3456 41 1 -4.6694 -5.5141 0.8199 42 1 1.7545 -5.7548 0.4315 43 1 2.9796 -3.6384 0.6949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360095855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:32 Heat of formation + Delta-G solvation = -49.971403 kcal Electronic energy + Delta-G solvation = -27497.001973 eV Core-core repulsion = 23508.430185 eV Total energy + Delta-G solvation = -3988.571789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29502 -40.04475 -39.07101 -38.07829 -36.36630 -35.11459 -34.58048 -32.63786 -31.45005 -30.92711 -28.73483 -27.57816 -26.28097 -25.31287 -23.12035 -22.53997 -22.28498 -21.57999 -20.68510 -19.15234 -18.32565 -17.26155 -16.93355 -16.76790 -16.59761 -16.12790 -15.58738 -15.39003 -14.96112 -14.72548 -14.48524 -14.40538 -14.20678 -14.01554 -13.77491 -13.64835 -13.41108 -12.88636 -12.66626 -12.53336 -12.33869 -12.22710 -12.01229 -11.70424 -11.56767 -11.29447 -10.99257 -10.92987 -10.74678 -10.61456 -10.49454 -10.39409 -10.13942 -9.53046 -9.10083 -8.79423 -8.61458 -8.56685 -7.70124 -6.06018 -4.04562 0.98956 1.07208 1.49842 2.26245 2.31454 3.26733 3.30503 3.36353 3.37932 3.54850 3.69235 3.76824 3.82747 4.10692 4.31271 4.41402 4.58016 4.63400 4.82751 4.95047 4.96902 5.03559 5.05826 5.18008 5.27517 5.35127 5.42088 5.51825 5.62503 5.72402 5.76313 5.92609 6.07130 6.15108 6.21719 6.35916 6.50478 6.51619 6.73287 6.81920 6.92433 6.98658 7.33585 7.39878 7.62505 8.22966 8.49107 8.93266 8.99809 9.53789 11.07495 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.002448 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.707725 B =11433.096104 C =11895.775781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.590 5.590 3 C 0.216 3.784 4 C -0.526 4.526 5 H 0.075 0.925 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.266 1.266 11 H -0.285 1.285 12 C 0.545 3.455 13 O -0.534 6.534 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.098 4.098 17 C -0.085 4.085 18 C -0.062 4.062 19 C -0.122 4.122 20 H 0.129 0.871 21 C -0.156 4.156 22 C 0.530 3.470 23 O -0.488 6.488 24 N -0.683 5.683 25 C 0.524 3.476 26 O -0.453 6.453 27 C -0.122 4.122 28 C -0.067 4.067 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.150 0.850 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.415 0.585 42 H 0.125 0.875 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.903 -23.623 -8.339 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.321 5.321 3 C 0.096 3.904 4 C -0.565 4.565 5 H 0.093 0.907 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.211 1.211 12 C 0.332 3.668 13 O -0.412 6.412 14 C -0.119 4.119 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.085 4.085 18 C -0.100 4.100 19 C -0.143 4.143 20 H 0.147 0.853 21 C -0.195 4.195 22 C 0.318 3.682 23 O -0.360 6.360 24 N -0.350 5.350 25 C 0.310 3.690 26 O -0.322 6.322 27 C -0.140 4.140 28 C -0.086 4.086 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.255 0.745 42 H 0.143 0.857 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.428 -23.253 -8.134 28.057 hybrid contribution -0.209 0.996 -0.374 1.084 sum -13.637 -22.257 -8.508 27.454 Atomic orbital electron populations 1.22286 0.81227 1.03702 1.00127 1.47719 1.06219 1.06971 1.71209 1.19696 0.92313 0.79887 0.98533 1.21320 1.36847 1.07101 0.91231 0.90709 1.24867 0.95281 0.97353 0.95590 1.69902 1.41710 1.23369 1.18640 0.86847 0.80114 0.79760 0.82933 1.19904 1.19073 1.21057 1.18257 0.87212 0.83403 0.77924 1.90747 1.14028 1.86887 1.49531 1.20216 0.95253 0.94427 1.01974 1.22271 0.93574 0.99502 0.97304 1.20824 0.99009 0.91771 0.99963 1.19738 0.94854 0.94368 0.99580 1.20512 0.98137 0.96261 0.95049 1.22147 0.96604 0.92378 1.03172 0.85307 1.22617 0.90830 0.98554 1.07528 1.20802 0.92542 0.81449 0.73388 1.90828 1.43261 1.55812 1.46076 1.44843 1.11953 1.10766 1.67399 1.20793 0.84438 0.89234 0.74516 1.90897 1.84292 1.14146 1.42836 1.20879 0.94430 0.97931 1.00786 1.21231 0.99831 0.90947 0.96588 0.93129 0.90298 0.90721 0.95034 0.94596 0.92586 0.83294 0.86463 0.90285 0.88672 0.85783 0.85821 0.74545 0.85729 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 8.65 59.85 0.52 1.66 16 2 N -0.59 -12.75 2.86 -184.08 -0.53 -13.27 16 3 C 0.22 5.42 4.20 -5.19 -0.02 5.40 16 4 C -0.53 -15.51 9.94 -34.44 -0.34 -15.85 16 5 H 0.07 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 8 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.54 11.86 7.51 -12.33 -0.09 11.77 16 13 O -0.53 -13.76 16.19 5.32 0.09 -13.68 16 14 C -0.12 -1.94 5.57 -104.97 -0.58 -2.53 16 15 C -0.11 -1.49 7.61 -39.19 -0.30 -1.79 16 16 C -0.10 -1.09 7.43 -39.64 -0.29 -1.38 16 17 C -0.09 -0.80 4.74 -104.53 -0.50 -1.29 16 18 C -0.06 -0.31 4.69 -27.89 -0.13 -0.44 16 19 C -0.12 -0.54 3.13 -90.83 -0.28 -0.82 16 20 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 21 C -0.16 -0.41 6.67 -26.94 -0.18 -0.59 16 22 C 0.53 3.18 8.55 -11.08 -0.09 3.08 16 23 O -0.49 -4.72 18.02 5.61 0.10 -4.62 16 24 N -0.68 -3.96 5.48 -11.39 -0.06 -4.02 16 25 C 0.52 3.80 7.67 -11.08 -0.09 3.72 16 26 O -0.45 -5.05 15.04 5.61 0.08 -4.97 16 27 C -0.12 -1.29 9.68 -39.64 -0.38 -1.68 16 28 C -0.07 -0.98 9.59 -39.19 -0.38 -1.36 16 29 H 0.05 0.67 7.02 -51.93 -0.36 0.31 16 30 H 0.08 1.19 5.22 -51.93 -0.27 0.92 16 31 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.95 6.96 -51.93 -0.36 0.59 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.15 1.90 4.04 -52.48 -0.21 1.68 16 36 H 0.12 1.13 7.67 -52.49 -0.40 0.72 16 37 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.09 0.27 8.08 -51.93 -0.42 -0.15 16 39 H 0.12 0.12 7.74 -51.93 -0.40 -0.28 16 40 H 0.12 0.12 8.14 -51.92 -0.42 -0.30 16 41 H 0.42 2.04 8.96 -40.82 -0.37 1.67 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.13 2.03 7.79 -52.48 -0.41 1.62 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -39.02 358.37 -7.33 -46.36 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.28 Total: -0.91 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -3.24 Total: -0.08 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.19 Total: -44.65 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.27 Total: -23.26 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.02 -7.33 -46.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360095855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.615 kcal (2) G-P(sol) polarization free energy of solvation -39.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds