Wall clock time and date at job start Tue Mar 31 2020 05:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81401 * 109.47530 * 2 1 4 4 O 1.42101 * 110.54067 * 68.37445 * 3 2 1 5 5 O 1.42099 * 110.54281 * 291.62996 * 3 2 1 6 6 N 1.65592 * 104.45243 * 180.02562 * 3 2 1 7 7 C 1.46921 * 120.63607 * 89.99966 * 6 3 2 8 8 C 1.53193 * 108.77816 * 126.36761 * 7 6 3 9 9 C 1.53038 * 109.31149 * 54.64059 * 8 7 6 10 10 C 1.53039 * 109.53742 * 298.63507 * 9 8 7 11 11 H 1.09006 * 109.49538 * 301.41687 * 10 9 8 12 12 C 1.50698 * 109.49728 * 181.31795 * 10 9 8 13 13 O 1.21291 * 119.99813 * 255.45841 * 12 10 9 14 14 N 1.34772 * 120.00143 * 75.46667 * 12 10 9 15 15 C 1.37100 * 120.00507 * 183.45971 * 14 12 10 16 16 H 1.08003 * 119.99363 * 328.34245 * 15 14 12 17 17 C 1.38947 * 120.00239 * 148.33751 * 15 14 12 18 18 N 1.31407 * 120.00122 * 359.12435 * 17 15 14 19 19 Si 1.86803 * 119.99937 * 179.12822 * 17 15 14 20 20 H 1.48501 * 109.47156 * 59.99664 * 19 17 15 21 21 H 1.48497 * 109.47137 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46915 * 300.00146 * 19 17 15 23 23 C 1.46508 * 120.00134 * 3.45904 * 14 12 10 24 24 C 1.52998 * 117.49740 * 132.60552 * 23 14 12 25 25 C 1.53000 * 117.49567 * 63.94526 * 23 14 12 26 26 C 1.46929 * 120.63012 * 269.72100 * 6 3 2 27 27 H 1.08998 * 109.47280 * 59.99699 * 1 2 3 28 28 H 1.08995 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47331 * 299.99786 * 1 2 3 30 30 H 1.09005 * 109.47164 * 240.00277 * 2 1 3 31 31 H 1.08998 * 109.47280 * 120.00301 * 2 1 3 32 32 H 1.08997 * 109.59028 * 246.16155 * 7 6 3 33 33 H 1.09010 * 109.58163 * 6.58417 * 7 6 3 34 34 H 1.08998 * 109.49471 * 174.59245 * 8 7 6 35 35 H 1.09006 * 109.49474 * 294.68681 * 8 7 6 36 36 H 1.08994 * 109.46120 * 58.65214 * 9 8 7 37 37 H 1.09000 * 109.45807 * 178.63134 * 9 8 7 38 38 H 0.97000 * 120.00074 * 185.01799 * 18 17 15 39 39 H 1.09004 * 115.54668 * 278.27830 * 23 14 12 40 40 H 1.08994 * 117.50245 * 0.02562 * 24 23 14 41 41 H 1.09006 * 117.49221 * 145.02582 * 24 23 14 42 42 H 1.09004 * 117.49397 * 214.98022 * 25 23 14 43 43 H 1.08999 * 117.50377 * 359.97438 * 25 23 14 44 44 H 1.08999 * 109.58469 * 353.41863 * 26 6 3 45 45 H 1.09001 * 109.58652 * 113.84611 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3439 -1.2369 6 7 3.7843 1.5652 -0.0007 7 6 4.5296 1.4999 -1.2652 8 6 5.6193 2.5765 -1.2515 9 6 6.4857 2.4039 -0.0018 10 6 5.6204 2.5765 1.2486 11 1 5.1570 3.5631 1.2369 12 6 6.4804 2.4385 2.4784 13 8 6.4350 1.4225 3.1392 14 7 7.2999 3.4441 2.8439 15 6 8.1341 3.2915 3.9212 16 1 7.8338 2.6716 4.7530 17 6 9.3657 3.9344 3.9427 18 7 9.7383 4.6748 2.9230 19 14 10.4919 3.7461 5.4212 20 1 10.8322 2.3123 5.6047 21 1 11.7357 4.5261 5.1985 22 1 9.8025 4.2505 6.6359 23 6 7.2993 4.7004 2.0902 24 6 7.2332 6.0035 2.8891 25 6 6.0124 5.5279 2.0974 26 6 4.5311 1.5056 1.2632 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.9885 0.5167 -1.3685 33 1 3.8505 1.6779 -2.0991 34 1 6.2406 2.4766 -2.1416 35 1 5.1559 3.5630 -1.2396 36 1 6.9289 1.4082 -0.0020 37 1 7.2768 3.1537 -0.0021 38 1 10.6266 5.0642 2.9053 39 1 7.8925 4.7002 1.1757 40 1 7.1906 5.9263 3.9755 41 1 7.7825 6.8608 2.4999 42 1 5.7592 6.0725 1.1878 43 1 5.1661 5.1376 2.6626 44 1 3.8531 1.6874 2.0971 45 1 4.9903 0.5229 1.3704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408046889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:42 Heat of formation + Delta-G solvation = -74.040390 kcal Electronic energy + Delta-G solvation = -28159.044124 eV Core-core repulsion = 24304.872577 eV Total energy + Delta-G solvation = -3854.171547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.47131 -37.55558 -37.17034 -35.99853 -35.92751 -33.36545 -33.04294 -32.34861 -31.06647 -30.75715 -25.48911 -24.71021 -23.93166 -23.33595 -21.71907 -21.29713 -20.48302 -18.75316 -18.59447 -17.73276 -16.81601 -16.49465 -16.25571 -15.78583 -15.10409 -14.87496 -14.55242 -14.32207 -14.23107 -13.87554 -13.86131 -13.63441 -13.32815 -13.13054 -12.73216 -12.53248 -12.50802 -12.11424 -12.05428 -11.90290 -11.82748 -11.80887 -11.34254 -11.10153 -10.97283 -10.81152 -10.70434 -10.68638 -10.57339 -10.49887 -10.34123 -10.11986 -9.65553 -9.33769 -8.89108 -8.78554 -8.26189 -7.60829 -6.26848 -3.91136 0.17542 2.59409 3.21063 3.26022 3.29858 3.78607 3.87370 4.02146 4.14888 4.35316 4.56128 4.69595 4.77024 4.84381 4.92058 5.08743 5.12250 5.17535 5.29710 5.41338 5.44301 5.46304 5.58431 5.61833 5.65923 5.80787 5.85509 5.96799 6.05408 6.06218 6.11888 6.21365 6.34338 6.36177 6.42631 6.54097 6.63221 6.73937 6.82277 7.00614 7.22782 7.59201 8.20305 8.51868 9.20556 9.43258 10.00144 10.78560 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.003549 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.498380 B = 7887.806589 C = 8119.464719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.607 3.393 4 O -0.950 6.950 5 O -0.958 6.958 6 N -0.999 5.999 7 C 0.117 3.883 8 C -0.128 4.128 9 C -0.104 4.104 10 C -0.113 4.113 11 H 0.093 0.907 12 C 0.469 3.531 13 O -0.587 6.587 14 N -0.420 5.420 15 C -0.311 4.311 16 H 0.092 0.908 17 C 0.043 3.957 18 N -0.874 5.874 19 Si 0.921 3.079 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.135 3.865 24 C -0.135 4.135 25 C -0.230 4.230 26 C 0.138 3.862 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.267 0.733 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -5.012 -10.287 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.700 3.300 4 O -0.940 6.940 5 O -0.948 6.948 6 N -0.837 5.837 7 C -0.008 4.008 8 C -0.167 4.167 9 C -0.142 4.142 10 C -0.136 4.136 11 H 0.111 0.889 12 C 0.257 3.743 13 O -0.471 6.471 14 N -0.138 5.138 15 C -0.438 4.438 16 H 0.110 0.890 17 C -0.162 4.162 18 N -0.512 5.512 19 Si 0.747 3.253 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 C 0.030 3.970 24 C -0.172 4.172 25 C -0.269 4.269 26 C 0.013 3.987 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.088 -4.541 -9.964 16.310 hybrid contribution 0.987 -0.635 0.683 1.359 sum -11.100 -5.177 -9.281 15.367 Atomic orbital electron populations 1.21494 0.90776 1.04864 1.03368 1.30598 1.06925 1.27307 1.11625 1.05136 0.73165 0.77416 0.74301 1.93610 1.83200 1.72210 1.44985 1.93567 1.83451 1.72427 1.45390 1.57682 1.23760 1.89645 1.12595 1.21483 0.95026 0.99673 0.84597 1.21852 0.97017 0.99288 0.98516 1.21392 0.97674 1.02895 0.92261 1.21438 0.96135 1.00773 0.95259 0.88870 1.19851 0.84276 0.83663 0.86540 1.90509 1.70365 1.29957 1.56281 1.43016 1.34686 1.09306 1.26798 1.19451 0.96961 1.30204 0.97212 0.88979 1.25315 0.97155 0.95785 0.97895 1.69847 1.19484 1.31805 1.30042 0.86098 0.79234 0.78497 0.81429 1.19921 1.21030 1.19996 1.21094 0.95318 0.83493 0.97134 1.22657 0.97794 0.97968 0.98826 1.23604 0.93532 1.06833 1.02902 1.21206 0.94143 1.00089 0.83293 0.91103 0.90185 0.90951 0.85232 0.84908 0.91458 0.89209 0.90731 0.91238 0.91669 0.90607 0.92304 0.87766 0.89307 0.89811 0.89565 0.89701 0.88896 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.92 37.16 0.37 -0.75 16 2 C -0.64 -5.32 6.90 37.16 0.26 -5.07 16 3 S 2.61 32.36 5.45 -107.50 -0.59 31.77 16 4 O -0.95 -15.27 16.58 -57.54 -0.95 -16.22 16 5 O -0.96 -13.70 16.59 -57.54 -0.95 -14.65 16 6 N -1.00 -12.94 3.23 -113.76 -0.37 -13.31 16 7 C 0.12 1.31 6.43 -3.71 -0.02 1.28 16 8 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 9 C -0.10 -1.65 5.06 -26.69 -0.14 -1.79 16 10 C -0.11 -2.07 1.93 -91.88 -0.18 -2.25 16 11 H 0.09 1.71 5.55 -51.93 -0.29 1.42 16 12 C 0.47 11.10 6.76 -10.99 -0.07 11.02 16 13 O -0.59 -15.62 15.67 5.55 0.09 -15.53 16 14 N -0.42 -10.42 2.92 -107.73 -0.31 -10.74 16 15 C -0.31 -8.45 8.71 -14.93 -0.13 -8.58 16 16 H 0.09 2.64 7.53 -52.48 -0.40 2.24 16 17 C 0.04 1.10 5.06 -17.47 -0.09 1.02 16 18 N -0.87 -22.39 10.54 55.50 0.58 -21.80 16 19 Si 0.92 20.60 29.56 -169.99 -5.02 15.58 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.13 2.94 2.78 -67.93 -0.19 2.75 16 24 C -0.13 -2.79 8.67 -26.69 -0.23 -3.03 16 25 C -0.23 -4.30 8.40 -26.69 -0.22 -4.53 16 26 C 0.14 2.22 5.22 -3.93 -0.02 2.20 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.13 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.88 6.86 -51.92 -0.36 0.53 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.29 6.39 -51.93 -0.33 0.96 16 38 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 39 H 0.10 2.31 7.02 -51.93 -0.36 1.95 16 40 H 0.09 2.00 7.98 -51.93 -0.41 1.58 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.64 7.86 -51.93 -0.41 1.23 16 44 H 0.09 1.57 6.85 -51.93 -0.36 1.22 16 45 H 0.08 1.27 7.74 -51.93 -0.40 0.87 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -32.98 365.42 -9.95 -42.93 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.10 Total: 5.93 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.83 Total: -9.46 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.10 Total: -45.85 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.82 Total: -46.41 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 32.36 SS G_CDS: -0.59 Total: 31.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.98 -9.95 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408046889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.108 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds