Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42107 * 108.57669 * 2 1 4 4 O 1.42100 * 108.58040 * 228.98132 * 2 1 3 5 5 C 1.81395 * 101.92553 * 114.48783 * 2 1 3 6 6 H 1.09010 * 109.49435 * 64.93526 * 5 2 1 7 7 C 1.53041 * 109.49972 * 184.99954 * 5 2 1 8 8 C 1.53037 * 109.52381 * 181.35698 * 7 5 2 9 9 C 1.53186 * 109.31547 * 298.61566 * 8 7 5 10 10 N 1.46920 * 108.76536 * 54.65699 * 9 8 7 11 11 C 1.34786 * 120.63170 * 126.40586 * 10 9 8 12 12 O 1.21581 * 119.99862 * 175.09683 * 11 10 9 13 13 N 1.34769 * 119.99766 * 355.09621 * 11 10 9 14 14 C 1.46500 * 120.00138 * 184.68134 * 13 11 10 15 15 C 1.52998 * 109.47287 * 184.86481 * 14 13 11 16 16 C 1.50702 * 115.54958 * 305.45077 * 15 14 13 17 17 H 1.07994 * 119.99555 * 144.69919 * 16 15 14 18 18 C 1.37877 * 119.99866 * 324.69838 * 16 15 14 19 19 N 1.31517 * 120.00149 * 2.93873 * 18 16 15 20 20 Si 1.86802 * 119.99723 * 182.93989 * 18 16 15 21 21 H 1.48496 * 109.47139 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47202 * 119.99996 * 20 18 16 23 23 H 1.48503 * 109.46799 * 240.00001 * 20 18 16 24 24 C 1.53002 * 117.49749 * 159.78416 * 15 14 13 25 25 C 1.52998 * 117.49775 * 91.12480 * 15 14 13 26 26 C 1.46924 * 118.74018 * 306.38314 * 10 9 8 27 27 H 1.08996 * 109.47148 * 305.50870 * 1 2 3 28 28 H 1.09004 * 109.47418 * 65.51173 * 1 2 3 29 29 H 1.09000 * 109.46745 * 185.50721 * 1 2 3 30 30 H 1.08998 * 109.46242 * 301.37379 * 7 5 2 31 31 H 1.08995 * 109.45643 * 61.34264 * 7 5 2 32 32 H 1.09001 * 109.49968 * 58.58309 * 8 7 5 33 33 H 1.09007 * 109.49482 * 178.67750 * 8 7 5 34 34 H 1.09004 * 109.60126 * 294.86952 * 9 8 7 35 35 H 1.09001 * 109.70396 * 174.50924 * 9 8 7 36 36 H 0.97006 * 120.00295 * 4.68853 * 13 11 10 37 37 H 1.09004 * 109.47298 * 304.86898 * 14 13 11 38 38 H 1.09007 * 109.46916 * 64.86498 * 14 13 11 39 39 H 0.96996 * 119.99459 * 185.00489 * 19 18 16 40 40 H 1.09004 * 117.50097 * 359.97438 * 24 15 14 41 41 H 1.08999 * 117.50091 * 145.02194 * 24 15 14 42 42 H 1.09002 * 117.49437 * 214.97907 * 25 15 14 43 43 H 1.08999 * 117.50278 * 359.96979 * 25 15 14 44 44 H 1.08993 * 109.59283 * 293.81987 * 26 10 9 45 45 H 1.09008 * 109.70752 * 173.46111 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8840 -1.0163 5 6 2.1888 -0.7357 1.6152 6 1 1.8381 -1.7676 1.6351 7 6 3.7005 -0.7053 1.8519 8 6 4.0204 -1.3564 3.1994 9 6 3.3398 -0.5634 4.3195 10 7 1.9042 -0.4640 4.0233 11 6 0.9871 -0.8497 4.9327 12 8 -0.1964 -0.6801 4.7120 13 7 1.3821 -1.4233 6.0865 14 6 0.3843 -1.9355 7.0290 15 6 1.0849 -2.4210 8.2996 16 6 2.1811 -3.4339 8.0907 17 1 3.0565 -3.4201 8.7230 18 6 2.0662 -4.3780 7.0925 19 7 1.0278 -4.3590 6.2856 20 14 3.3856 -5.6843 6.8862 21 1 4.4410 -5.4882 7.9123 22 1 2.7796 -7.0301 7.0496 23 1 3.9853 -5.5725 5.5323 24 6 0.2393 -2.5467 9.5685 25 6 1.2609 -1.4141 9.4380 26 6 1.4872 0.0642 2.7173 27 1 -0.3633 0.5969 0.8365 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0986 30 1 4.2039 -1.2531 1.0553 31 1 4.0466 0.3282 1.8566 32 1 3.6522 -2.3824 3.2043 33 1 5.0990 -1.3557 3.3569 34 1 3.7716 0.4360 4.3744 35 1 3.4820 -1.0756 5.2711 36 1 2.3270 -1.4970 6.2930 37 1 -0.3178 -1.1410 7.2822 38 1 -0.1551 -2.7651 6.5719 39 1 0.9096 -5.0647 5.6308 40 1 -0.8160 -2.2830 9.4983 41 1 0.4761 -3.3616 10.2525 42 1 2.1694 -1.4845 10.0362 43 1 0.8780 -0.4056 9.2817 44 1 1.7679 1.1147 2.6414 45 1 0.4070 -0.0341 2.6089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431050849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = -86.755082 kcal Electronic energy + Delta-G solvation = -27796.059280 eV Core-core repulsion = 23941.336383 eV Total energy + Delta-G solvation = -3854.722897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29994 -38.97583 -38.16121 -38.00615 -37.11414 -35.02024 -34.16578 -33.62812 -32.45456 -30.23815 -28.01738 -27.34727 -25.84374 -24.59136 -22.96593 -22.29516 -21.12841 -20.40242 -19.82470 -19.35072 -18.07511 -17.57831 -17.30559 -17.06138 -16.79746 -16.70288 -16.20675 -15.81506 -15.48669 -15.38468 -14.98787 -14.82336 -14.38410 -14.21093 -14.17921 -13.97869 -13.73576 -13.55800 -13.27715 -13.20754 -13.09562 -12.96981 -12.94597 -12.57764 -12.35488 -12.26552 -12.08267 -12.07016 -12.02508 -11.80064 -11.51704 -11.30824 -10.97322 -10.82793 -10.67041 -10.15781 -9.90417 -9.29221 -7.92879 -6.18615 -1.00746 1.40395 1.47717 1.55386 1.62746 1.92815 2.34201 2.42422 2.62331 2.98552 2.99136 3.25674 3.44526 3.55260 3.67592 3.85591 3.96723 4.08223 4.19067 4.22329 4.28597 4.39480 4.48663 4.54445 4.56405 4.70690 4.77009 4.78433 4.84438 4.93948 4.96741 4.97561 4.98246 5.13904 5.26366 5.30210 5.54381 5.57550 5.62417 5.94869 6.00490 6.11133 6.40096 6.82867 7.26301 7.46429 7.78835 8.92950 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003779 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.678293 B = 7406.683564 C = 8176.575484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.445 3.555 3 O -0.963 6.963 4 O -0.975 6.975 5 C -0.588 4.588 6 H 0.142 0.858 7 C -0.107 4.107 8 C -0.123 4.123 9 C 0.103 3.897 10 N -0.625 5.625 11 C 0.698 3.302 12 O -0.645 6.645 13 N -0.698 5.698 14 C 0.195 3.805 15 C 0.009 3.991 16 C -0.502 4.502 17 H 0.057 0.943 18 C 0.040 3.960 19 N -0.887 5.887 20 Si 0.945 3.055 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.281 1.281 24 C -0.199 4.199 25 C -0.188 4.188 26 C 0.137 3.863 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.256 0.744 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 8.390 -9.916 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.630 3.370 3 O -0.960 6.960 4 O -0.972 6.972 5 C -0.698 4.698 6 H 0.160 0.840 7 C -0.145 4.145 8 C -0.162 4.162 9 C -0.019 4.019 10 N -0.363 5.363 11 C 0.399 3.601 12 O -0.528 6.528 13 N -0.350 5.350 14 C 0.071 3.929 15 C 0.008 3.992 16 C -0.539 4.539 17 H 0.076 0.924 18 C -0.162 4.162 19 N -0.524 5.524 20 Si 0.772 3.228 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.237 4.237 25 C -0.225 4.225 26 C 0.012 3.988 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.031 0.969 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.822 8.714 -10.906 14.473 hybrid contribution 0.162 -1.557 0.831 1.772 sum 3.984 7.157 -10.074 12.984 Atomic orbital electron populations 1.30207 1.22710 1.13586 1.13582 1.07064 0.79541 0.74376 0.75989 1.93544 1.80671 1.35255 1.86574 1.93550 1.80993 1.67856 1.54761 1.30671 1.06584 1.13314 1.19186 0.84034 1.21406 0.89697 1.03965 0.99469 1.21814 1.02117 0.98844 0.93474 1.21877 0.79238 1.01919 0.98915 1.47066 1.06022 1.68205 1.14986 1.16051 0.84519 0.78456 0.81027 1.90771 1.17146 1.64996 1.79912 1.44878 1.10827 1.60729 1.18586 1.20604 0.88897 0.95163 0.88281 1.19290 0.97205 0.96423 0.86255 1.20707 1.03643 1.13969 1.15587 0.92439 1.25521 0.97189 0.98944 0.94515 1.70077 1.29612 1.32227 1.20527 0.85713 0.79908 0.79339 0.77869 1.19210 1.21657 1.20726 1.22963 0.95416 1.00766 1.04592 1.22932 1.00411 0.93683 1.05471 1.21385 1.00468 0.96936 0.79981 0.83631 0.83283 0.83761 0.89222 0.88433 0.92988 0.87578 0.88696 0.90571 0.76266 0.96913 0.90592 0.93412 0.90692 0.90356 0.89779 0.90055 0.88221 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.99 10.04 113.37 1.14 -6.86 16 2 S 2.45 44.44 4.90 -56.49 -0.28 44.16 16 3 O -0.96 -22.39 17.98 -127.37 -2.29 -24.68 16 4 O -0.97 -24.44 18.10 -127.37 -2.31 -26.74 16 5 C -0.59 -11.66 2.77 30.67 0.08 -11.57 16 6 H 0.14 2.85 8.14 -2.38 -0.02 2.83 16 7 C -0.11 -2.00 5.17 30.62 0.16 -1.84 16 8 C -0.12 -2.60 6.08 30.67 0.19 -2.42 16 9 C 0.10 2.51 6.43 86.36 0.56 3.07 16 10 N -0.62 -18.96 2.97 -836.93 -2.49 -21.45 16 11 C 0.70 28.30 8.30 179.05 1.49 29.79 16 12 O -0.64 -30.22 15.76 -3.97 -0.06 -30.28 16 13 N -0.70 -29.30 5.07 -478.53 -2.43 -31.73 16 14 C 0.20 9.16 4.62 86.38 0.40 9.56 16 15 C 0.01 0.41 2.06 -52.93 -0.11 0.30 16 16 C -0.50 -24.22 8.31 25.60 0.21 -24.01 16 17 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 18 C 0.04 1.95 5.31 84.65 0.45 2.40 16 19 N -0.89 -45.83 10.17 21.45 0.22 -45.61 16 20 Si 0.94 39.38 29.54 68.60 2.03 41.40 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 24 C -0.20 -8.29 9.96 30.62 0.30 -7.99 16 25 C -0.19 -7.32 9.93 30.62 0.30 -7.02 16 26 C 0.14 3.24 5.25 86.36 0.45 3.69 16 27 H 0.15 1.57 6.92 -2.39 -0.02 1.55 16 28 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.08 2.07 5.56 -2.39 -0.01 2.06 16 36 H 0.40 15.88 5.40 -92.70 -0.50 15.38 16 37 H 0.01 0.60 8.05 -2.38 -0.02 0.58 16 38 H 0.08 4.12 5.90 -2.38 -0.01 4.11 16 39 H 0.26 13.01 8.32 -92.71 -0.77 12.24 16 40 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 41 H 0.08 3.25 8.14 -2.39 -0.02 3.24 16 42 H 0.08 3.12 8.14 -2.39 -0.02 3.11 16 43 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.10 1.94 8.06 -2.39 -0.02 1.92 16 45 H 0.10 2.44 5.64 -2.38 -0.01 2.43 16 Total: -1.00 -70.30 369.41 -1.48 -71.78 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.50 Total: 36.04 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.62 Total: -12.90 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.70 Total: -98.79 kcal Atomic # 8 Polarization: -77.05 SS G_CDS: -4.66 Total: -81.70 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Atomic # 16 Polarization: 44.44 SS G_CDS: -0.28 Total: 44.16 kcal Total: -70.30 -1.48 -71.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431050849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.972 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds